Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS19725 and ABIE40_RS19730 are separated by 128 nucleotides ABIE40_RS19730 and ABIE40_RS19735 are separated by 0 nucleotides ABIE40_RS19735 and ABIE40_RS19740 are separated by 126 nucleotides
ABIE40_RS19725: ABIE40_RS19725 - NAD(P)/FAD-dependent oxidoreductase, at 40,837 to 41,742
_RS19725
ABIE40_RS19730: ABIE40_RS19730 - Rrf2 family transcriptional regulator, at 41,871 to 42,335
_RS19730
ABIE40_RS19735: ABIE40_RS19735 - class I SAM-dependent methyltransferase, at 42,336 to 42,815
_RS19735
ABIE40_RS19740: ABIE40_RS19740 - DUF3095 domain-containing protein, at 42,942 to 44,114
_RS19740
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.917 kb on + strand at 40.918 kb on - strand at 40.918 kb on - strand at 40.918 kb on - strand at 40.949 kb on + strand, within ABIE40_RS19725 at 40.950 kb on - strand, within ABIE40_RS19725 at 41.125 kb on + strand, within ABIE40_RS19725 at 41.126 kb on - strand, within ABIE40_RS19725 at 41.241 kb on - strand, within ABIE40_RS19725 at 41.241 kb on - strand, within ABIE40_RS19725 at 41.241 kb on - strand, within ABIE40_RS19725 at 41.346 kb on - strand, within ABIE40_RS19725 at 41.735 kb on + strand at 41.735 kb on + strand at 41.735 kb on + strand at 41.735 kb on + strand at 41.736 kb on - strand at 41.748 kb on + strand at 41.748 kb on + strand at 41.748 kb on + strand at 41.748 kb on + strand at 41.749 kb on - strand at 41.777 kb on + strand at 41.841 kb on - strand at 41.857 kb on + strand at 41.857 kb on + strand at 41.857 kb on + strand at 41.858 kb on - strand at 41.858 kb on - strand at 42.024 kb on + strand, within ABIE40_RS19730 at 42.025 kb on - strand, within ABIE40_RS19730 at 42.025 kb on - strand, within ABIE40_RS19730 at 42.025 kb on - strand, within ABIE40_RS19730 at 42.102 kb on + strand, within ABIE40_RS19730 at 42.102 kb on + strand, within ABIE40_RS19730 at 42.103 kb on - strand, within ABIE40_RS19730 at 42.103 kb on - strand, within ABIE40_RS19730 at 42.285 kb on + strand, within ABIE40_RS19730 at 42.327 kb on - strand at 42.327 kb on - strand at 42.327 kb on - strand at 42.327 kb on - strand at 42.337 kb on + strand at 42.337 kb on + strand at 42.337 kb on + strand at 42.337 kb on + strand at 42.337 kb on + strand at 42.338 kb on - strand at 42.338 kb on - strand at 42.358 kb on + strand at 42.359 kb on - strand at 42.359 kb on - strand at 42.593 kb on + strand, within ABIE40_RS19735 at 42.593 kb on + strand, within ABIE40_RS19735 at 42.593 kb on + strand, within ABIE40_RS19735 at 42.594 kb on - strand, within ABIE40_RS19735 at 42.594 kb on - strand, within ABIE40_RS19735 at 42.594 kb on - strand, within ABIE40_RS19735 at 42.622 kb on + strand, within ABIE40_RS19735 at 42.623 kb on - strand, within ABIE40_RS19735 at 42.623 kb on - strand, within ABIE40_RS19735 at 42.623 kb on - strand, within ABIE40_RS19735 at 42.688 kb on + strand, within ABIE40_RS19735 at 42.689 kb on - strand, within ABIE40_RS19735 at 42.689 kb on - strand, within ABIE40_RS19735 at 42.689 kb on - strand, within ABIE40_RS19735 at 42.768 kb on - strand at 42.817 kb on + strand at 42.817 kb on + strand at 42.817 kb on + strand at 42.817 kb on + strand at 42.818 kb on - strand at 42.818 kb on - strand at 42.818 kb on - strand at 42.842 kb on + strand at 42.855 kb on + strand at 42.855 kb on + strand at 42.887 kb on + strand at 42.929 kb on + strand at 42.929 kb on + strand at 42.929 kb on + strand at 42.929 kb on + strand at 42.930 kb on - strand at 42.930 kb on - strand at 42.930 kb on - strand at 42.930 kb on - strand at 43.023 kb on + strand at 43.024 kb on - strand at 43.101 kb on + strand, within ABIE40_RS19740 at 43.102 kb on - strand, within ABIE40_RS19740 at 43.102 kb on - strand, within ABIE40_RS19740
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM remove 40,917 + -0.8 40,918 - +1.5 40,918 - -0.2 40,918 - +1.3 40,949 + ABIE40_RS19725 0.12 -2.1 40,950 - ABIE40_RS19725 0.12 -0.2 41,125 + ABIE40_RS19725 0.32 -0.7 41,126 - ABIE40_RS19725 0.32 +1.4 41,241 - ABIE40_RS19725 0.45 -0.0 41,241 - ABIE40_RS19725 0.45 -0.1 41,241 - ABIE40_RS19725 0.45 -0.2 41,346 - ABIE40_RS19725 0.56 +0.3 41,735 + +1.0 41,735 + +1.7 41,735 + -2.9 41,735 + -0.7 41,736 - +0.4 41,748 + -0.6 41,748 + +0.5 41,748 + +2.1 41,748 + +0.5 41,749 - -1.3 41,777 + +1.2 41,841 - -0.7 41,857 + +1.6 41,857 + +0.8 41,857 + +1.0 41,858 - -0.5 41,858 - +0.7 42,024 + ABIE40_RS19730 0.33 -2.2 42,025 - ABIE40_RS19730 0.33 +0.3 42,025 - ABIE40_RS19730 0.33 +0.3 42,025 - ABIE40_RS19730 0.33 -0.3 42,102 + ABIE40_RS19730 0.50 -0.4 42,102 + ABIE40_RS19730 0.50 +0.1 42,103 - ABIE40_RS19730 0.50 +1.8 42,103 - ABIE40_RS19730 0.50 -3.0 42,285 + ABIE40_RS19730 0.89 -0.0 42,327 - +0.8 42,327 - -0.2 42,327 - -1.2 42,327 - -2.3 42,337 + -0.7 42,337 + +1.1 42,337 + -0.1 42,337 + -1.2 42,337 + +1.8 42,338 - -2.0 42,338 - -2.6 42,358 + +1.8 42,359 - +1.2 42,359 - -2.5 42,593 + ABIE40_RS19735 0.54 -1.6 42,593 + ABIE40_RS19735 0.54 -1.0 42,593 + ABIE40_RS19735 0.54 -1.0 42,594 - ABIE40_RS19735 0.54 +0.3 42,594 - ABIE40_RS19735 0.54 +0.3 42,594 - ABIE40_RS19735 0.54 +1.8 42,622 + ABIE40_RS19735 0.60 +0.3 42,623 - ABIE40_RS19735 0.60 +0.3 42,623 - ABIE40_RS19735 0.60 -0.5 42,623 - ABIE40_RS19735 0.60 -0.1 42,688 + ABIE40_RS19735 0.73 -2.7 42,689 - ABIE40_RS19735 0.74 -1.3 42,689 - ABIE40_RS19735 0.74 +1.8 42,689 - ABIE40_RS19735 0.74 -2.4 42,768 - +1.8 42,817 + -1.2 42,817 + +0.2 42,817 + -1.0 42,817 + -2.9 42,818 - -3.0 42,818 - -2.0 42,818 - -1.9 42,842 + +1.8 42,855 + +0.7 42,855 + -0.7 42,887 + +1.5 42,929 + +0.6 42,929 + -0.2 42,929 + -0.5 42,929 + +1.1 42,930 - -0.3 42,930 - -0.7 42,930 - +0.8 42,930 - -0.0 43,023 + -0.8 43,024 - -0.5 43,101 + ABIE40_RS19740 0.14 -0.8 43,102 - ABIE40_RS19740 0.14 +0.0 43,102 - ABIE40_RS19740 0.14 -0.6
Or see this region's nucleotide sequence