Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01400

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS01395 and ABIE40_RS01400 are separated by 100 nucleotidesABIE40_RS01400 and ABIE40_RS01405 are separated by 96 nucleotides ABIE40_RS01395: ABIE40_RS01395 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 272,714 to 273,817 _RS01395 ABIE40_RS01400: ABIE40_RS01400 - cupin domain-containing protein, at 273,918 to 274,421 _RS01400 ABIE40_RS01405: ABIE40_RS01405 - glutathione synthase, at 274,518 to 275,465 _RS01405 Position (kb) 273 274 275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 272.920 kb on + strand, within ABIE40_RS01395at 272.920 kb on + strand, within ABIE40_RS01395at 272.920 kb on + strand, within ABIE40_RS01395at 272.967 kb on - strand, within ABIE40_RS01395at 272.967 kb on - strand, within ABIE40_RS01395at 272.967 kb on - strand, within ABIE40_RS01395at 272.967 kb on - strand, within ABIE40_RS01395at 272.976 kb on - strand, within ABIE40_RS01395at 272.983 kb on + strand, within ABIE40_RS01395at 272.983 kb on + strand, within ABIE40_RS01395at 272.983 kb on + strand, within ABIE40_RS01395at 272.983 kb on + strand, within ABIE40_RS01395at 272.983 kb on + strand, within ABIE40_RS01395at 272.983 kb on + strand, within ABIE40_RS01395at 272.983 kb on + strand, within ABIE40_RS01395at 272.983 kb on + strand, within ABIE40_RS01395at 272.983 kb on + strand, within ABIE40_RS01395at 273.092 kb on + strand, within ABIE40_RS01395at 273.092 kb on + strand, within ABIE40_RS01395at 273.093 kb on - strand, within ABIE40_RS01395at 273.093 kb on - strand, within ABIE40_RS01395at 273.093 kb on - strand, within ABIE40_RS01395at 273.281 kb on + strand, within ABIE40_RS01395at 273.281 kb on + strand, within ABIE40_RS01395at 273.281 kb on + strand, within ABIE40_RS01395at 273.281 kb on + strand, within ABIE40_RS01395at 273.281 kb on + strand, within ABIE40_RS01395at 273.281 kb on + strand, within ABIE40_RS01395at 273.281 kb on + strand, within ABIE40_RS01395at 273.281 kb on + strand, within ABIE40_RS01395at 273.282 kb on - strand, within ABIE40_RS01395at 273.282 kb on - strand, within ABIE40_RS01395at 273.282 kb on - strand, within ABIE40_RS01395at 273.282 kb on - strand, within ABIE40_RS01395at 273.282 kb on - strand, within ABIE40_RS01395at 273.282 kb on - strand, within ABIE40_RS01395at 273.282 kb on - strand, within ABIE40_RS01395at 273.282 kb on - strand, within ABIE40_RS01395at 273.380 kb on + strand, within ABIE40_RS01395at 273.380 kb on + strand, within ABIE40_RS01395at 273.380 kb on + strand, within ABIE40_RS01395at 273.380 kb on + strand, within ABIE40_RS01395at 273.558 kb on + strand, within ABIE40_RS01395at 273.575 kb on + strand, within ABIE40_RS01395at 273.575 kb on + strand, within ABIE40_RS01395at 273.575 kb on + strand, within ABIE40_RS01395at 273.575 kb on + strand, within ABIE40_RS01395at 273.576 kb on - strand, within ABIE40_RS01395at 273.576 kb on - strand, within ABIE40_RS01395at 273.576 kb on - strand, within ABIE40_RS01395at 273.576 kb on - strand, within ABIE40_RS01395at 273.576 kb on - strand, within ABIE40_RS01395at 273.576 kb on - strand, within ABIE40_RS01395at 273.599 kb on + strand, within ABIE40_RS01395at 273.599 kb on + strand, within ABIE40_RS01395at 273.599 kb on + strand, within ABIE40_RS01395at 273.599 kb on + strand, within ABIE40_RS01395at 273.600 kb on - strand, within ABIE40_RS01395at 273.815 kb on + strandat 273.815 kb on + strandat 273.816 kb on - strandat 273.816 kb on - strandat 273.816 kb on - strandat 273.816 kb on - strandat 273.835 kb on + strandat 273.868 kb on - strandat 273.881 kb on + strandat 273.882 kb on - strandat 273.882 kb on - strandat 273.903 kb on + strandat 273.903 kb on + strandat 273.904 kb on - strandat 273.932 kb on + strandat 273.932 kb on + strandat 273.933 kb on - strandat 273.933 kb on - strandat 273.976 kb on - strand, within ABIE40_RS01400at 274.091 kb on + strand, within ABIE40_RS01400at 274.092 kb on - strand, within ABIE40_RS01400at 274.217 kb on + strand, within ABIE40_RS01400at 274.217 kb on + strand, within ABIE40_RS01400at 274.217 kb on + strand, within ABIE40_RS01400at 274.218 kb on - strand, within ABIE40_RS01400at 274.218 kb on - strand, within ABIE40_RS01400at 274.311 kb on + strand, within ABIE40_RS01400at 274.311 kb on + strand, within ABIE40_RS01400at 274.311 kb on + strand, within ABIE40_RS01400at 274.312 kb on - strand, within ABIE40_RS01400at 274.312 kb on - strand, within ABIE40_RS01400at 274.312 kb on - strand, within ABIE40_RS01400at 274.312 kb on - strand, within ABIE40_RS01400at 274.312 kb on - strand, within ABIE40_RS01400at 274.368 kb on + strand, within ABIE40_RS01400at 274.395 kb on - strandat 274.486 kb on + strandat 274.486 kb on + strandat 274.486 kb on + strandat 274.486 kb on + strandat 274.487 kb on - strandat 274.487 kb on - strandat 274.537 kb on + strandat 274.624 kb on - strand, within ABIE40_RS01405at 274.638 kb on + strand, within ABIE40_RS01405at 274.638 kb on + strand, within ABIE40_RS01405at 274.639 kb on - strand, within ABIE40_RS01405at 274.640 kb on + strand, within ABIE40_RS01405at 274.640 kb on + strand, within ABIE40_RS01405at 274.640 kb on + strand, within ABIE40_RS01405at 274.641 kb on - strand, within ABIE40_RS01405at 274.641 kb on - strand, within ABIE40_RS01405at 274.809 kb on + strand, within ABIE40_RS01405at 274.809 kb on + strand, within ABIE40_RS01405at 274.809 kb on + strand, within ABIE40_RS01405at 274.809 kb on + strand, within ABIE40_RS01405at 274.809 kb on + strand, within ABIE40_RS01405at 274.809 kb on + strand, within ABIE40_RS01405at 274.810 kb on - strand, within ABIE40_RS01405at 274.810 kb on - strand, within ABIE40_RS01405at 274.810 kb on - strand, within ABIE40_RS01405at 274.810 kb on - strand, within ABIE40_RS01405at 274.810 kb on - strand, within ABIE40_RS01405at 275.011 kb on - strand, within ABIE40_RS01405at 275.121 kb on + strand, within ABIE40_RS01405at 275.122 kb on - strand, within ABIE40_RS01405at 275.157 kb on - strand, within ABIE40_RS01405at 275.157 kb on - strand, within ABIE40_RS01405at 275.157 kb on - strand, within ABIE40_RS01405at 275.157 kb on - strand, within ABIE40_RS01405at 275.352 kb on + strand, within ABIE40_RS01405at 275.352 kb on + strand, within ABIE40_RS01405

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
remove
272,920 + ABIE40_RS01395 0.19 -0.3
272,920 + ABIE40_RS01395 0.19 -0.7
272,920 + ABIE40_RS01395 0.19 +1.5
272,967 - ABIE40_RS01395 0.23 -0.3
272,967 - ABIE40_RS01395 0.23 -0.8
272,967 - ABIE40_RS01395 0.23 -0.4
272,967 - ABIE40_RS01395 0.23 +0.1
272,976 - ABIE40_RS01395 0.24 -0.6
272,983 + ABIE40_RS01395 0.24 -1.9
272,983 + ABIE40_RS01395 0.24 -0.1
272,983 + ABIE40_RS01395 0.24 +0.6
272,983 + ABIE40_RS01395 0.24 -1.3
272,983 + ABIE40_RS01395 0.24 -0.5
272,983 + ABIE40_RS01395 0.24 +0.9
272,983 + ABIE40_RS01395 0.24 +1.3
272,983 + ABIE40_RS01395 0.24 +0.7
272,983 + ABIE40_RS01395 0.24 -0.4
273,092 + ABIE40_RS01395 0.34 -1.3
273,092 + ABIE40_RS01395 0.34 -0.1
273,093 - ABIE40_RS01395 0.34 -0.3
273,093 - ABIE40_RS01395 0.34 -1.5
273,093 - ABIE40_RS01395 0.34 +0.3
273,281 + ABIE40_RS01395 0.51 -2.3
273,281 + ABIE40_RS01395 0.51 -0.2
273,281 + ABIE40_RS01395 0.51 +2.9
273,281 + ABIE40_RS01395 0.51 -1.2
273,281 + ABIE40_RS01395 0.51 -0.3
273,281 + ABIE40_RS01395 0.51 -1.1
273,281 + ABIE40_RS01395 0.51 -2.3
273,281 + ABIE40_RS01395 0.51 -1.2
273,282 - ABIE40_RS01395 0.51 -0.5
273,282 - ABIE40_RS01395 0.51 -1.1
273,282 - ABIE40_RS01395 0.51 +0.2
273,282 - ABIE40_RS01395 0.51 -0.5
273,282 - ABIE40_RS01395 0.51 -1.7
273,282 - ABIE40_RS01395 0.51 +0.0
273,282 - ABIE40_RS01395 0.51 +0.1
273,282 - ABIE40_RS01395 0.51 -0.1
273,380 + ABIE40_RS01395 0.60 +0.8
273,380 + ABIE40_RS01395 0.60 -0.9
273,380 + ABIE40_RS01395 0.60 -1.2
273,380 + ABIE40_RS01395 0.60 -0.7
273,558 + ABIE40_RS01395 0.76 -0.2
273,575 + ABIE40_RS01395 0.78 -0.8
273,575 + ABIE40_RS01395 0.78 +0.3
273,575 + ABIE40_RS01395 0.78 +1.8
273,575 + ABIE40_RS01395 0.78 +0.1
273,576 - ABIE40_RS01395 0.78 +1.2
273,576 - ABIE40_RS01395 0.78 -0.9
273,576 - ABIE40_RS01395 0.78 -2.5
273,576 - ABIE40_RS01395 0.78 +1.0
273,576 - ABIE40_RS01395 0.78 -1.7
273,576 - ABIE40_RS01395 0.78 -0.2
273,599 + ABIE40_RS01395 0.80 -1.1
273,599 + ABIE40_RS01395 0.80 +1.6
273,599 + ABIE40_RS01395 0.80 +0.2
273,599 + ABIE40_RS01395 0.80 +0.6
273,600 - ABIE40_RS01395 0.80 +1.1
273,815 + +0.1
273,815 + -0.2
273,816 - +0.6
273,816 - -0.0
273,816 - -0.5
273,816 - -1.5
273,835 + -0.3
273,868 - +0.8
273,881 + +1.6
273,882 - +0.3
273,882 - +0.6
273,903 + -0.8
273,903 + -0.4
273,904 - -4.3
273,932 + +0.7
273,932 + -0.7
273,933 - -0.2
273,933 - -0.9
273,976 - ABIE40_RS01400 0.12 -0.3
274,091 + ABIE40_RS01400 0.34 -1.0
274,092 - ABIE40_RS01400 0.35 -1.5
274,217 + ABIE40_RS01400 0.59 -0.3
274,217 + ABIE40_RS01400 0.59 +0.5
274,217 + ABIE40_RS01400 0.59 -1.1
274,218 - ABIE40_RS01400 0.60 -2.7
274,218 - ABIE40_RS01400 0.60 +0.4
274,311 + ABIE40_RS01400 0.78 -0.1
274,311 + ABIE40_RS01400 0.78 +0.6
274,311 + ABIE40_RS01400 0.78 +0.1
274,312 - ABIE40_RS01400 0.78 -2.4
274,312 - ABIE40_RS01400 0.78 -3.9
274,312 - ABIE40_RS01400 0.78 -0.8
274,312 - ABIE40_RS01400 0.78 -1.9
274,312 - ABIE40_RS01400 0.78 -0.1
274,368 + ABIE40_RS01400 0.89 +0.2
274,395 - -0.7
274,486 + +0.6
274,486 + -0.6
274,486 + +0.8
274,486 + -0.9
274,487 - -1.2
274,487 - -0.2
274,537 + -2.1
274,624 - ABIE40_RS01405 0.11 -0.1
274,638 + ABIE40_RS01405 0.13 -0.9
274,638 + ABIE40_RS01405 0.13 -1.9
274,639 - ABIE40_RS01405 0.13 -0.5
274,640 + ABIE40_RS01405 0.13 -1.2
274,640 + ABIE40_RS01405 0.13 -0.4
274,640 + ABIE40_RS01405 0.13 -0.5
274,641 - ABIE40_RS01405 0.13 +0.3
274,641 - ABIE40_RS01405 0.13 -0.1
274,809 + ABIE40_RS01405 0.31 -1.1
274,809 + ABIE40_RS01405 0.31 -0.5
274,809 + ABIE40_RS01405 0.31 -1.0
274,809 + ABIE40_RS01405 0.31 -0.9
274,809 + ABIE40_RS01405 0.31 -2.9
274,809 + ABIE40_RS01405 0.31 -1.5
274,810 - ABIE40_RS01405 0.31 +2.5
274,810 - ABIE40_RS01405 0.31 -1.2
274,810 - ABIE40_RS01405 0.31 -0.7
274,810 - ABIE40_RS01405 0.31 +1.9
274,810 - ABIE40_RS01405 0.31 -0.9
275,011 - ABIE40_RS01405 0.52 -2.3
275,121 + ABIE40_RS01405 0.64 -1.7
275,122 - ABIE40_RS01405 0.64 -2.5
275,157 - ABIE40_RS01405 0.67 +2.9
275,157 - ABIE40_RS01405 0.67 -0.2
275,157 - ABIE40_RS01405 0.67 +1.4
275,157 - ABIE40_RS01405 0.67 -1.1
275,352 + ABIE40_RS01405 0.88 -1.0
275,352 + ABIE40_RS01405 0.88 -0.9

Or see this region's nucleotide sequence