Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27355 and ABIE40_RS27360 are separated by 189 nucleotides ABIE40_RS27360 and ABIE40_RS27365 are separated by 451 nucleotides ABIE40_RS27365 and ABIE40_RS27370 are separated by 19 nucleotides ABIE40_RS27370 and ABIE40_RS27375 are separated by 93 nucleotides
ABIE40_RS27355: ABIE40_RS27355 - ATP-binding protein, at 185,083 to 186,654
_RS27355
ABIE40_RS27360: ABIE40_RS27360 - hypothetical protein, at 186,844 to 187,110
_RS27360
ABIE40_RS27365: ABIE40_RS27365 - ATPase domain-containing protein, at 187,562 to 189,001
_RS27365
ABIE40_RS27370: ABIE40_RS27370 - response regulator, at 189,021 to 189,383
_RS27370
ABIE40_RS27375: ABIE40_RS27375 - response regulator, at 189,477 to 189,863
_RS27375
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 186.652 kb on + strand at 186.675 kb on - strand at 186.675 kb on - strand at 186.825 kb on - strand at 186.840 kb on + strand at 186.841 kb on - strand at 186.841 kb on - strand at 186.841 kb on - strand at 186.850 kb on + strand at 186.851 kb on - strand at 186.851 kb on - strand at 187.108 kb on + strand at 187.108 kb on + strand at 187.109 kb on - strand at 187.109 kb on - strand at 187.109 kb on - strand at 187.109 kb on - strand at 187.266 kb on + strand at 187.271 kb on - strand at 187.271 kb on - strand at 187.281 kb on + strand at 187.281 kb on + strand at 187.282 kb on - strand at 187.282 kb on - strand at 187.282 kb on - strand at 187.339 kb on + strand at 187.339 kb on + strand at 187.339 kb on + strand at 187.339 kb on + strand at 187.339 kb on + strand at 187.340 kb on - strand at 187.346 kb on + strand at 187.379 kb on - strand at 187.380 kb on + strand at 187.380 kb on + strand at 187.380 kb on + strand at 187.380 kb on + strand at 187.380 kb on + strand at 187.381 kb on - strand at 187.496 kb on + strand at 187.496 kb on + strand at 187.496 kb on + strand at 187.497 kb on - strand at 187.497 kb on - strand at 187.497 kb on - strand at 187.526 kb on + strand at 187.527 kb on - strand at 187.527 kb on - strand at 187.542 kb on + strand at 187.542 kb on + strand at 187.542 kb on + strand at 187.543 kb on - strand at 187.576 kb on - strand at 187.646 kb on + strand at 187.646 kb on + strand at 187.647 kb on - strand at 187.647 kb on - strand at 187.647 kb on - strand at 187.647 kb on - strand at 187.647 kb on - strand at 187.737 kb on - strand, within ABIE40_RS27365 at 187.832 kb on + strand, within ABIE40_RS27365 at 187.832 kb on + strand, within ABIE40_RS27365 at 187.832 kb on + strand, within ABIE40_RS27365 at 187.833 kb on - strand, within ABIE40_RS27365 at 187.881 kb on + strand, within ABIE40_RS27365 at 187.882 kb on - strand, within ABIE40_RS27365 at 188.038 kb on - strand, within ABIE40_RS27365 at 188.080 kb on + strand, within ABIE40_RS27365 at 188.080 kb on + strand, within ABIE40_RS27365 at 188.080 kb on + strand, within ABIE40_RS27365 at 188.080 kb on + strand, within ABIE40_RS27365 at 188.080 kb on + strand, within ABIE40_RS27365 at 188.080 kb on + strand, within ABIE40_RS27365 at 188.080 kb on + strand, within ABIE40_RS27365 at 188.080 kb on + strand, within ABIE40_RS27365 at 188.081 kb on - strand, within ABIE40_RS27365 at 188.081 kb on - strand, within ABIE40_RS27365 at 188.110 kb on + strand, within ABIE40_RS27365 at 188.111 kb on - strand, within ABIE40_RS27365 at 188.111 kb on - strand, within ABIE40_RS27365 at 188.254 kb on + strand, within ABIE40_RS27365 at 188.254 kb on + strand, within ABIE40_RS27365 at 188.255 kb on - strand, within ABIE40_RS27365 at 188.349 kb on + strand, within ABIE40_RS27365 at 188.450 kb on + strand, within ABIE40_RS27365 at 188.451 kb on - strand, within ABIE40_RS27365 at 188.451 kb on - strand, within ABIE40_RS27365 at 188.451 kb on - strand, within ABIE40_RS27365 at 188.664 kb on - strand, within ABIE40_RS27365 at 188.675 kb on - strand, within ABIE40_RS27365 at 188.725 kb on + strand, within ABIE40_RS27365 at 188.728 kb on + strand, within ABIE40_RS27365 at 188.729 kb on - strand, within ABIE40_RS27365 at 188.729 kb on - strand, within ABIE40_RS27365 at 188.729 kb on - strand, within ABIE40_RS27365 at 188.729 kb on - strand, within ABIE40_RS27365 at 188.817 kb on + strand, within ABIE40_RS27365 at 188.818 kb on - strand, within ABIE40_RS27365 at 188.833 kb on - strand, within ABIE40_RS27365 at 188.833 kb on - strand, within ABIE40_RS27365 at 188.850 kb on - strand, within ABIE40_RS27365 at 189.038 kb on - strand at 189.071 kb on + strand, within ABIE40_RS27370 at 189.071 kb on + strand, within ABIE40_RS27370 at 189.071 kb on + strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.218 kb on + strand, within ABIE40_RS27370 at 189.219 kb on - strand, within ABIE40_RS27370 at 189.262 kb on + strand, within ABIE40_RS27370 at 189.262 kb on + strand, within ABIE40_RS27370 at 189.263 kb on - strand, within ABIE40_RS27370 at 189.263 kb on - strand, within ABIE40_RS27370 at 189.331 kb on - strand, within ABIE40_RS27370 at 189.384 kb on + strand at 189.436 kb on + strand at 189.437 kb on - strand at 189.437 kb on - strand at 189.441 kb on + strand at 189.448 kb on + strand at 189.448 kb on + strand at 189.449 kb on - strand at 189.449 kb on - strand at 189.507 kb on - strand at 189.518 kb on + strand, within ABIE40_RS27375 at 189.543 kb on + strand, within ABIE40_RS27375 at 189.543 kb on + strand, within ABIE40_RS27375 at 189.543 kb on + strand, within ABIE40_RS27375 at 189.543 kb on + strand, within ABIE40_RS27375 at 189.544 kb on - strand, within ABIE40_RS27375 at 189.637 kb on + strand, within ABIE40_RS27375 at 189.892 kb on + strand at 189.903 kb on - strand at 189.903 kb on - strand at 189.903 kb on - strand at 189.903 kb on - strand at 189.930 kb on + strand at 189.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 186,652 + +1.3 186,675 - -0.2 186,675 - -0.2 186,825 - -0.4 186,840 + -1.3 186,841 - +0.2 186,841 - +0.4 186,841 - -0.3 186,850 + -3.3 186,851 - +1.0 186,851 - +0.7 187,108 + -0.9 187,108 + +0.7 187,109 - -0.1 187,109 - -0.7 187,109 - +1.4 187,109 - +1.6 187,266 + +0.4 187,271 - +0.6 187,271 - -0.4 187,281 + -0.3 187,281 + +2.3 187,282 - +1.9 187,282 - +1.9 187,282 - +0.2 187,339 + +1.3 187,339 + +1.9 187,339 + +0.6 187,339 + -0.3 187,339 + +0.6 187,340 - +0.3 187,346 + -0.7 187,379 - -0.7 187,380 + +1.9 187,380 + +1.0 187,380 + +0.3 187,380 + +1.3 187,380 + +0.3 187,381 - -1.0 187,496 + +0.5 187,496 + +0.9 187,496 + -0.9 187,497 - -2.0 187,497 - -1.3 187,497 - -1.1 187,526 + -1.7 187,527 - +0.2 187,527 - -0.9 187,542 + +0.4 187,542 + +0.9 187,542 + -0.5 187,543 - -1.8 187,576 - +0.3 187,646 + +1.0 187,646 + +0.6 187,647 - -0.1 187,647 - -0.1 187,647 - -0.2 187,647 - -0.3 187,647 - -0.4 187,737 - ABIE40_RS27365 0.12 -0.6 187,832 + ABIE40_RS27365 0.19 -0.4 187,832 + ABIE40_RS27365 0.19 -0.5 187,832 + ABIE40_RS27365 0.19 -0.9 187,833 - ABIE40_RS27365 0.19 +1.9 187,881 + ABIE40_RS27365 0.22 +1.6 187,882 - ABIE40_RS27365 0.22 -3.3 188,038 - ABIE40_RS27365 0.33 +0.1 188,080 + ABIE40_RS27365 0.36 -2.9 188,080 + ABIE40_RS27365 0.36 -0.2 188,080 + ABIE40_RS27365 0.36 -0.7 188,080 + ABIE40_RS27365 0.36 -0.0 188,080 + ABIE40_RS27365 0.36 +1.0 188,080 + ABIE40_RS27365 0.36 +0.6 188,080 + ABIE40_RS27365 0.36 -0.4 188,080 + ABIE40_RS27365 0.36 +0.3 188,081 - ABIE40_RS27365 0.36 +0.1 188,081 - ABIE40_RS27365 0.36 -2.7 188,110 + ABIE40_RS27365 0.38 -1.1 188,111 - ABIE40_RS27365 0.38 +0.3 188,111 - ABIE40_RS27365 0.38 -0.1 188,254 + ABIE40_RS27365 0.48 +1.9 188,254 + ABIE40_RS27365 0.48 -0.6 188,255 - ABIE40_RS27365 0.48 -0.9 188,349 + ABIE40_RS27365 0.55 +0.9 188,450 + ABIE40_RS27365 0.62 -0.4 188,451 - ABIE40_RS27365 0.62 -0.7 188,451 - ABIE40_RS27365 0.62 +1.3 188,451 - ABIE40_RS27365 0.62 +0.4 188,664 - ABIE40_RS27365 0.77 -1.7 188,675 - ABIE40_RS27365 0.77 +0.4 188,725 + ABIE40_RS27365 0.81 -1.3 188,728 + ABIE40_RS27365 0.81 -1.2 188,729 - ABIE40_RS27365 0.81 -0.5 188,729 - ABIE40_RS27365 0.81 +1.3 188,729 - ABIE40_RS27365 0.81 +0.9 188,729 - ABIE40_RS27365 0.81 -0.9 188,817 + ABIE40_RS27365 0.87 +0.7 188,818 - ABIE40_RS27365 0.87 -0.2 188,833 - ABIE40_RS27365 0.88 -1.1 188,833 - ABIE40_RS27365 0.88 -1.5 188,850 - ABIE40_RS27365 0.89 +0.3 189,038 - +0.9 189,071 + ABIE40_RS27370 0.14 -0.0 189,071 + ABIE40_RS27370 0.14 +0.7 189,071 + ABIE40_RS27370 0.14 +2.9 189,072 - ABIE40_RS27370 0.14 -0.7 189,072 - ABIE40_RS27370 0.14 +0.1 189,072 - ABIE40_RS27370 0.14 +0.1 189,072 - ABIE40_RS27370 0.14 -0.7 189,072 - ABIE40_RS27370 0.14 +0.2 189,072 - ABIE40_RS27370 0.14 -0.5 189,218 + ABIE40_RS27370 0.54 -2.0 189,219 - ABIE40_RS27370 0.55 -0.3 189,262 + ABIE40_RS27370 0.66 -0.4 189,262 + ABIE40_RS27370 0.66 +1.3 189,263 - ABIE40_RS27370 0.67 -0.0 189,263 - ABIE40_RS27370 0.67 -2.4 189,331 - ABIE40_RS27370 0.85 -0.7 189,384 + +0.3 189,436 + +0.7 189,437 - -0.1 189,437 - +2.9 189,441 + +1.0 189,448 + +2.6 189,448 + +0.3 189,449 - -0.3 189,449 - -0.4 189,507 - +0.9 189,518 + ABIE40_RS27375 0.11 -0.2 189,543 + ABIE40_RS27375 0.17 +1.9 189,543 + ABIE40_RS27375 0.17 +0.5 189,543 + ABIE40_RS27375 0.17 -0.1 189,543 + ABIE40_RS27375 0.17 -0.7 189,544 - ABIE40_RS27375 0.17 +0.6 189,637 + ABIE40_RS27375 0.41 +0.3 189,892 + +0.9 189,903 - +0.3 189,903 - -0.9 189,903 - -1.4 189,903 - +1.9 189,930 + -0.0 189,930 + -0.4
Or see this region's nucleotide sequence