Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25225

Experiment: R2A no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS25220 and ABIE40_RS25225 overlap by 4 nucleotidesABIE40_RS25225 and ABIE40_RS25230 are separated by 136 nucleotides ABIE40_RS25220: ABIE40_RS25220 - guanine deaminase, at 1,215,478 to 1,216,812 _RS25220 ABIE40_RS25225: ABIE40_RS25225 - urate hydroxylase PuuD, at 1,216,809 to 1,218,050 _RS25225 ABIE40_RS25230: ABIE40_RS25230 - LysR family transcriptional regulator, at 1,218,187 to 1,219,128 _RS25230 Position (kb) 1216 1217 1218 1219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1216.046 kb on + strand, within ABIE40_RS25220at 1216.046 kb on + strand, within ABIE40_RS25220at 1216.046 kb on + strand, within ABIE40_RS25220at 1216.046 kb on + strand, within ABIE40_RS25220at 1216.046 kb on + strand, within ABIE40_RS25220at 1216.046 kb on + strand, within ABIE40_RS25220at 1216.046 kb on + strand, within ABIE40_RS25220at 1216.046 kb on + strand, within ABIE40_RS25220at 1216.046 kb on + strand, within ABIE40_RS25220at 1216.046 kb on + strand, within ABIE40_RS25220at 1216.047 kb on - strand, within ABIE40_RS25220at 1216.047 kb on - strand, within ABIE40_RS25220at 1216.047 kb on - strand, within ABIE40_RS25220at 1216.047 kb on - strand, within ABIE40_RS25220at 1216.047 kb on - strand, within ABIE40_RS25220at 1216.047 kb on - strand, within ABIE40_RS25220at 1216.051 kb on - strand, within ABIE40_RS25220at 1216.051 kb on - strand, within ABIE40_RS25220at 1216.056 kb on + strand, within ABIE40_RS25220at 1216.056 kb on + strand, within ABIE40_RS25220at 1216.056 kb on + strand, within ABIE40_RS25220at 1216.056 kb on + strand, within ABIE40_RS25220at 1216.056 kb on + strand, within ABIE40_RS25220at 1216.056 kb on + strand, within ABIE40_RS25220at 1216.057 kb on - strand, within ABIE40_RS25220at 1216.058 kb on + strand, within ABIE40_RS25220at 1216.058 kb on + strand, within ABIE40_RS25220at 1216.058 kb on + strand, within ABIE40_RS25220at 1216.058 kb on + strand, within ABIE40_RS25220at 1216.059 kb on - strand, within ABIE40_RS25220at 1216.059 kb on - strand, within ABIE40_RS25220at 1216.059 kb on - strand, within ABIE40_RS25220at 1216.059 kb on - strand, within ABIE40_RS25220at 1216.133 kb on + strand, within ABIE40_RS25220at 1216.133 kb on + strand, within ABIE40_RS25220at 1216.133 kb on + strand, within ABIE40_RS25220at 1216.133 kb on + strand, within ABIE40_RS25220at 1216.133 kb on + strand, within ABIE40_RS25220at 1216.134 kb on - strand, within ABIE40_RS25220at 1216.134 kb on - strand, within ABIE40_RS25220at 1216.134 kb on - strand, within ABIE40_RS25220at 1216.134 kb on - strand, within ABIE40_RS25220at 1216.134 kb on - strand, within ABIE40_RS25220at 1216.134 kb on - strand, within ABIE40_RS25220at 1216.409 kb on + strand, within ABIE40_RS25220at 1216.515 kb on + strand, within ABIE40_RS25220at 1216.515 kb on + strand, within ABIE40_RS25220at 1216.515 kb on + strand, within ABIE40_RS25220at 1216.515 kb on + strand, within ABIE40_RS25220at 1216.516 kb on - strand, within ABIE40_RS25220at 1216.517 kb on + strand, within ABIE40_RS25220at 1216.517 kb on + strand, within ABIE40_RS25220at 1216.517 kb on + strand, within ABIE40_RS25220at 1216.517 kb on + strand, within ABIE40_RS25220at 1216.517 kb on + strand, within ABIE40_RS25220at 1216.517 kb on + strand, within ABIE40_RS25220at 1216.517 kb on + strand, within ABIE40_RS25220at 1216.517 kb on + strand, within ABIE40_RS25220at 1216.517 kb on + strand, within ABIE40_RS25220at 1216.517 kb on + strand, within ABIE40_RS25220at 1216.518 kb on - strand, within ABIE40_RS25220at 1216.518 kb on - strand, within ABIE40_RS25220at 1216.518 kb on - strand, within ABIE40_RS25220at 1216.518 kb on - strand, within ABIE40_RS25220at 1216.518 kb on - strand, within ABIE40_RS25220at 1216.518 kb on - strand, within ABIE40_RS25220at 1216.518 kb on - strand, within ABIE40_RS25220at 1216.518 kb on - strand, within ABIE40_RS25220at 1216.518 kb on - strand, within ABIE40_RS25220at 1216.662 kb on + strand, within ABIE40_RS25220at 1216.663 kb on - strand, within ABIE40_RS25220at 1216.663 kb on - strand, within ABIE40_RS25220at 1216.663 kb on - strand, within ABIE40_RS25220at 1216.673 kb on + strand, within ABIE40_RS25220at 1216.705 kb on + strandat 1216.730 kb on + strandat 1216.730 kb on + strandat 1216.731 kb on - strandat 1216.736 kb on + strandat 1216.736 kb on + strandat 1216.737 kb on - strandat 1216.803 kb on + strandat 1216.930 kb on + strandat 1216.930 kb on + strandat 1216.931 kb on - strandat 1216.931 kb on - strandat 1216.931 kb on - strandat 1216.931 kb on - strandat 1217.242 kb on + strand, within ABIE40_RS25225at 1217.243 kb on - strand, within ABIE40_RS25225at 1217.362 kb on + strand, within ABIE40_RS25225at 1217.363 kb on - strand, within ABIE40_RS25225at 1217.363 kb on - strand, within ABIE40_RS25225at 1217.363 kb on - strand, within ABIE40_RS25225at 1217.363 kb on - strand, within ABIE40_RS25225at 1217.363 kb on - strand, within ABIE40_RS25225at 1217.363 kb on - strand, within ABIE40_RS25225at 1217.363 kb on - strand, within ABIE40_RS25225at 1217.369 kb on + strand, within ABIE40_RS25225at 1217.402 kb on - strand, within ABIE40_RS25225at 1217.549 kb on + strand, within ABIE40_RS25225at 1217.549 kb on + strand, within ABIE40_RS25225at 1217.549 kb on + strand, within ABIE40_RS25225at 1217.549 kb on + strand, within ABIE40_RS25225at 1217.549 kb on + strand, within ABIE40_RS25225at 1217.550 kb on - strand, within ABIE40_RS25225at 1217.550 kb on - strand, within ABIE40_RS25225at 1217.550 kb on - strand, within ABIE40_RS25225at 1217.550 kb on - strand, within ABIE40_RS25225at 1217.550 kb on - strand, within ABIE40_RS25225at 1217.551 kb on + strand, within ABIE40_RS25225at 1217.551 kb on + strand, within ABIE40_RS25225at 1217.581 kb on + strand, within ABIE40_RS25225at 1217.581 kb on + strand, within ABIE40_RS25225at 1217.581 kb on + strand, within ABIE40_RS25225at 1217.581 kb on + strand, within ABIE40_RS25225at 1217.582 kb on - strand, within ABIE40_RS25225at 1217.603 kb on + strand, within ABIE40_RS25225at 1217.603 kb on + strand, within ABIE40_RS25225at 1217.641 kb on + strand, within ABIE40_RS25225at 1217.641 kb on + strand, within ABIE40_RS25225at 1217.641 kb on + strand, within ABIE40_RS25225at 1217.726 kb on + strand, within ABIE40_RS25225at 1217.726 kb on + strand, within ABIE40_RS25225at 1217.727 kb on - strand, within ABIE40_RS25225at 1217.727 kb on - strand, within ABIE40_RS25225at 1217.728 kb on + strand, within ABIE40_RS25225at 1217.728 kb on + strand, within ABIE40_RS25225at 1217.728 kb on + strand, within ABIE40_RS25225at 1217.729 kb on - strand, within ABIE40_RS25225at 1217.729 kb on - strand, within ABIE40_RS25225at 1217.729 kb on - strand, within ABIE40_RS25225at 1217.729 kb on - strand, within ABIE40_RS25225at 1217.729 kb on - strand, within ABIE40_RS25225at 1217.729 kb on - strand, within ABIE40_RS25225at 1217.746 kb on + strand, within ABIE40_RS25225at 1217.747 kb on - strand, within ABIE40_RS25225at 1217.749 kb on + strand, within ABIE40_RS25225at 1217.749 kb on + strand, within ABIE40_RS25225at 1217.750 kb on - strand, within ABIE40_RS25225at 1217.791 kb on + strand, within ABIE40_RS25225at 1217.791 kb on + strand, within ABIE40_RS25225at 1217.791 kb on + strand, within ABIE40_RS25225at 1217.791 kb on + strand, within ABIE40_RS25225at 1217.791 kb on + strand, within ABIE40_RS25225at 1217.791 kb on + strand, within ABIE40_RS25225at 1217.792 kb on - strand, within ABIE40_RS25225at 1217.792 kb on - strand, within ABIE40_RS25225at 1217.792 kb on - strand, within ABIE40_RS25225at 1217.792 kb on - strand, within ABIE40_RS25225at 1217.849 kb on - strand, within ABIE40_RS25225at 1217.864 kb on - strand, within ABIE40_RS25225at 1217.864 kb on - strand, within ABIE40_RS25225at 1217.864 kb on - strand, within ABIE40_RS25225at 1217.956 kb on + strandat 1217.956 kb on + strandat 1217.956 kb on + strandat 1217.957 kb on - strandat 1218.040 kb on + strandat 1218.041 kb on - strandat 1218.046 kb on + strandat 1218.046 kb on + strandat 1218.046 kb on + strandat 1218.046 kb on + strandat 1218.046 kb on + strandat 1218.046 kb on + strandat 1218.047 kb on - strandat 1218.047 kb on - strandat 1218.047 kb on - strandat 1218.047 kb on - strandat 1218.047 kb on - strandat 1218.047 kb on - strandat 1218.140 kb on - strandat 1218.176 kb on + strandat 1218.176 kb on + strandat 1218.177 kb on - strandat 1218.186 kb on + strandat 1218.186 kb on + strandat 1218.186 kb on + strandat 1218.186 kb on + strandat 1218.187 kb on - strandat 1218.187 kb on - strandat 1218.187 kb on - strandat 1218.187 kb on - strandat 1218.194 kb on - strandat 1218.194 kb on - strandat 1218.237 kb on + strandat 1218.383 kb on - strand, within ABIE40_RS25230at 1218.383 kb on - strand, within ABIE40_RS25230at 1218.577 kb on - strand, within ABIE40_RS25230at 1218.577 kb on - strand, within ABIE40_RS25230at 1218.697 kb on + strand, within ABIE40_RS25230at 1218.697 kb on + strand, within ABIE40_RS25230at 1218.698 kb on - strand, within ABIE40_RS25230at 1218.698 kb on - strand, within ABIE40_RS25230at 1218.698 kb on - strand, within ABIE40_RS25230at 1218.699 kb on + strand, within ABIE40_RS25230at 1218.699 kb on + strand, within ABIE40_RS25230at 1218.700 kb on - strand, within ABIE40_RS25230at 1218.700 kb on - strand, within ABIE40_RS25230at 1218.790 kb on + strand, within ABIE40_RS25230at 1218.847 kb on + strand, within ABIE40_RS25230at 1218.847 kb on + strand, within ABIE40_RS25230at 1218.847 kb on + strand, within ABIE40_RS25230at 1218.848 kb on - strand, within ABIE40_RS25230at 1218.848 kb on - strand, within ABIE40_RS25230at 1218.848 kb on - strand, within ABIE40_RS25230at 1218.873 kb on + strand, within ABIE40_RS25230at 1218.873 kb on + strand, within ABIE40_RS25230

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
remove
1,216,046 + ABIE40_RS25220 0.43 +2.6
1,216,046 + ABIE40_RS25220 0.43 +0.6
1,216,046 + ABIE40_RS25220 0.43 +2.2
1,216,046 + ABIE40_RS25220 0.43 +0.3
1,216,046 + ABIE40_RS25220 0.43 +2.9
1,216,046 + ABIE40_RS25220 0.43 -1.5
1,216,046 + ABIE40_RS25220 0.43 +0.2
1,216,046 + ABIE40_RS25220 0.43 -0.9
1,216,046 + ABIE40_RS25220 0.43 -1.4
1,216,046 + ABIE40_RS25220 0.43 -1.3
1,216,047 - ABIE40_RS25220 0.43 +0.8
1,216,047 - ABIE40_RS25220 0.43 -1.0
1,216,047 - ABIE40_RS25220 0.43 -0.5
1,216,047 - ABIE40_RS25220 0.43 +0.0
1,216,047 - ABIE40_RS25220 0.43 +0.6
1,216,047 - ABIE40_RS25220 0.43 +0.1
1,216,051 - ABIE40_RS25220 0.43 +0.9
1,216,051 - ABIE40_RS25220 0.43 +1.2
1,216,056 + ABIE40_RS25220 0.43 +1.3
1,216,056 + ABIE40_RS25220 0.43 -2.1
1,216,056 + ABIE40_RS25220 0.43 +0.9
1,216,056 + ABIE40_RS25220 0.43 +0.3
1,216,056 + ABIE40_RS25220 0.43 -1.1
1,216,056 + ABIE40_RS25220 0.43 -1.2
1,216,057 - ABIE40_RS25220 0.43 -0.5
1,216,058 + ABIE40_RS25220 0.43 -1.1
1,216,058 + ABIE40_RS25220 0.43 -0.9
1,216,058 + ABIE40_RS25220 0.43 -0.7
1,216,058 + ABIE40_RS25220 0.43 +0.3
1,216,059 - ABIE40_RS25220 0.44 -0.3
1,216,059 - ABIE40_RS25220 0.44 -0.3
1,216,059 - ABIE40_RS25220 0.44 -1.8
1,216,059 - ABIE40_RS25220 0.44 -0.8
1,216,133 + ABIE40_RS25220 0.49 -0.4
1,216,133 + ABIE40_RS25220 0.49 -1.3
1,216,133 + ABIE40_RS25220 0.49 +0.3
1,216,133 + ABIE40_RS25220 0.49 -0.4
1,216,133 + ABIE40_RS25220 0.49 +0.2
1,216,134 - ABIE40_RS25220 0.49 +0.3
1,216,134 - ABIE40_RS25220 0.49 -0.7
1,216,134 - ABIE40_RS25220 0.49 +0.9
1,216,134 - ABIE40_RS25220 0.49 -0.5
1,216,134 - ABIE40_RS25220 0.49 +1.1
1,216,134 - ABIE40_RS25220 0.49 -0.3
1,216,409 + ABIE40_RS25220 0.70 +2.4
1,216,515 + ABIE40_RS25220 0.78 -1.3
1,216,515 + ABIE40_RS25220 0.78 +0.2
1,216,515 + ABIE40_RS25220 0.78 +2.1
1,216,515 + ABIE40_RS25220 0.78 -0.0
1,216,516 - ABIE40_RS25220 0.78 +1.2
1,216,517 + ABIE40_RS25220 0.78 -0.9
1,216,517 + ABIE40_RS25220 0.78 +0.9
1,216,517 + ABIE40_RS25220 0.78 +0.4
1,216,517 + ABIE40_RS25220 0.78 +1.1
1,216,517 + ABIE40_RS25220 0.78 -0.9
1,216,517 + ABIE40_RS25220 0.78 -1.6
1,216,517 + ABIE40_RS25220 0.78 +0.8
1,216,517 + ABIE40_RS25220 0.78 +1.9
1,216,517 + ABIE40_RS25220 0.78 -0.0
1,216,517 + ABIE40_RS25220 0.78 +2.4
1,216,518 - ABIE40_RS25220 0.78 -1.8
1,216,518 - ABIE40_RS25220 0.78 +0.8
1,216,518 - ABIE40_RS25220 0.78 -0.3
1,216,518 - ABIE40_RS25220 0.78 -0.5
1,216,518 - ABIE40_RS25220 0.78 -1.4
1,216,518 - ABIE40_RS25220 0.78 +0.1
1,216,518 - ABIE40_RS25220 0.78 -0.4
1,216,518 - ABIE40_RS25220 0.78 -0.7
1,216,518 - ABIE40_RS25220 0.78 +2.9
1,216,662 + ABIE40_RS25220 0.89 +0.3
1,216,663 - ABIE40_RS25220 0.89 +0.0
1,216,663 - ABIE40_RS25220 0.89 +1.3
1,216,663 - ABIE40_RS25220 0.89 -0.9
1,216,673 + ABIE40_RS25220 0.90 -0.4
1,216,705 + -1.8
1,216,730 + +0.1
1,216,730 + +1.2
1,216,731 - +0.2
1,216,736 + +0.3
1,216,736 + -0.4
1,216,737 - +0.9
1,216,803 + +0.3
1,216,930 + -0.4
1,216,930 + +1.2
1,216,931 - -0.1
1,216,931 - -0.4
1,216,931 - +0.4
1,216,931 - +0.5
1,217,242 + ABIE40_RS25225 0.35 -0.3
1,217,243 - ABIE40_RS25225 0.35 +0.1
1,217,362 + ABIE40_RS25225 0.45 +0.4
1,217,363 - ABIE40_RS25225 0.45 -0.7
1,217,363 - ABIE40_RS25225 0.45 -0.9
1,217,363 - ABIE40_RS25225 0.45 +0.3
1,217,363 - ABIE40_RS25225 0.45 +2.1
1,217,363 - ABIE40_RS25225 0.45 -0.5
1,217,363 - ABIE40_RS25225 0.45 +1.5
1,217,363 - ABIE40_RS25225 0.45 -0.0
1,217,369 + ABIE40_RS25225 0.45 -0.4
1,217,402 - ABIE40_RS25225 0.48 -0.0
1,217,549 + ABIE40_RS25225 0.60 -2.2
1,217,549 + ABIE40_RS25225 0.60 -0.2
1,217,549 + ABIE40_RS25225 0.60 +3.1
1,217,549 + ABIE40_RS25225 0.60 +0.1
1,217,549 + ABIE40_RS25225 0.60 -2.1
1,217,550 - ABIE40_RS25225 0.60 +0.3
1,217,550 - ABIE40_RS25225 0.60 -0.3
1,217,550 - ABIE40_RS25225 0.60 -0.4
1,217,550 - ABIE40_RS25225 0.60 -2.8
1,217,550 - ABIE40_RS25225 0.60 +2.3
1,217,551 + ABIE40_RS25225 0.60 +0.3
1,217,551 + ABIE40_RS25225 0.60 -0.4
1,217,581 + ABIE40_RS25225 0.62 -0.5
1,217,581 + ABIE40_RS25225 0.62 -0.2
1,217,581 + ABIE40_RS25225 0.62 -2.3
1,217,581 + ABIE40_RS25225 0.62 +0.9
1,217,582 - ABIE40_RS25225 0.62 -0.9
1,217,603 + ABIE40_RS25225 0.64 +1.9
1,217,603 + ABIE40_RS25225 0.64 -0.6
1,217,641 + ABIE40_RS25225 0.67 +0.5
1,217,641 + ABIE40_RS25225 0.67 +0.9
1,217,641 + ABIE40_RS25225 0.67 +1.3
1,217,726 + ABIE40_RS25225 0.74 -0.4
1,217,726 + ABIE40_RS25225 0.74 -1.0
1,217,727 - ABIE40_RS25225 0.74 -1.3
1,217,727 - ABIE40_RS25225 0.74 +1.2
1,217,728 + ABIE40_RS25225 0.74 -0.6
1,217,728 + ABIE40_RS25225 0.74 +0.4
1,217,728 + ABIE40_RS25225 0.74 +0.5
1,217,729 - ABIE40_RS25225 0.74 -1.1
1,217,729 - ABIE40_RS25225 0.74 -1.0
1,217,729 - ABIE40_RS25225 0.74 -0.9
1,217,729 - ABIE40_RS25225 0.74 -0.2
1,217,729 - ABIE40_RS25225 0.74 +0.6
1,217,729 - ABIE40_RS25225 0.74 -1.6
1,217,746 + ABIE40_RS25225 0.75 -0.8
1,217,747 - ABIE40_RS25225 0.76 -0.7
1,217,749 + ABIE40_RS25225 0.76 -1.3
1,217,749 + ABIE40_RS25225 0.76 -0.9
1,217,750 - ABIE40_RS25225 0.76 +1.0
1,217,791 + ABIE40_RS25225 0.79 +0.2
1,217,791 + ABIE40_RS25225 0.79 +0.3
1,217,791 + ABIE40_RS25225 0.79 +0.4
1,217,791 + ABIE40_RS25225 0.79 -0.8
1,217,791 + ABIE40_RS25225 0.79 -1.6
1,217,791 + ABIE40_RS25225 0.79 -0.2
1,217,792 - ABIE40_RS25225 0.79 -0.9
1,217,792 - ABIE40_RS25225 0.79 -1.0
1,217,792 - ABIE40_RS25225 0.79 -0.3
1,217,792 - ABIE40_RS25225 0.79 -1.0
1,217,849 - ABIE40_RS25225 0.84 +0.5
1,217,864 - ABIE40_RS25225 0.85 -1.0
1,217,864 - ABIE40_RS25225 0.85 -0.7
1,217,864 - ABIE40_RS25225 0.85 -0.2
1,217,956 + +0.3
1,217,956 + -1.3
1,217,956 + -0.1
1,217,957 - +1.9
1,218,040 + -0.9
1,218,041 - +1.5
1,218,046 + +1.9
1,218,046 + -1.1
1,218,046 + +2.9
1,218,046 + +1.1
1,218,046 + -0.2
1,218,046 + -1.3
1,218,047 - -1.0
1,218,047 - +2.3
1,218,047 - -0.6
1,218,047 - -0.4
1,218,047 - -0.9
1,218,047 - +0.0
1,218,140 - -1.4
1,218,176 + +0.4
1,218,176 + -2.3
1,218,177 - -1.1
1,218,186 + -0.4
1,218,186 + -0.4
1,218,186 + -1.5
1,218,186 + -1.5
1,218,187 - -0.4
1,218,187 - +0.2
1,218,187 - -1.2
1,218,187 - -1.0
1,218,194 - -0.4
1,218,194 - -1.4
1,218,237 + -0.6
1,218,383 - ABIE40_RS25230 0.21 +0.2
1,218,383 - ABIE40_RS25230 0.21 +0.7
1,218,577 - ABIE40_RS25230 0.41 +0.9
1,218,577 - ABIE40_RS25230 0.41 +0.3
1,218,697 + ABIE40_RS25230 0.54 -0.8
1,218,697 + ABIE40_RS25230 0.54 +1.6
1,218,698 - ABIE40_RS25230 0.54 +1.0
1,218,698 - ABIE40_RS25230 0.54 +1.1
1,218,698 - ABIE40_RS25230 0.54 +0.1
1,218,699 + ABIE40_RS25230 0.54 -1.2
1,218,699 + ABIE40_RS25230 0.54 -0.8
1,218,700 - ABIE40_RS25230 0.54 -2.1
1,218,700 - ABIE40_RS25230 0.54 +0.1
1,218,790 + ABIE40_RS25230 0.64 -0.6
1,218,847 + ABIE40_RS25230 0.70 -0.7
1,218,847 + ABIE40_RS25230 0.70 +0.5
1,218,847 + ABIE40_RS25230 0.70 +0.9
1,218,848 - ABIE40_RS25230 0.70 -2.6
1,218,848 - ABIE40_RS25230 0.70 +2.3
1,218,848 - ABIE40_RS25230 0.70 +1.9
1,218,873 + ABIE40_RS25230 0.73 -0.3
1,218,873 + ABIE40_RS25230 0.73 +0.3

Or see this region's nucleotide sequence