Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03055 and ABIE40_RS03060 are separated by 1 nucleotides ABIE40_RS03060 and ABIE40_RS03065 overlap by 80 nucleotides ABIE40_RS03065 and ABIE40_RS03070 are separated by 281 nucleotides
ABIE40_RS03055: ABIE40_RS03055 - chemotaxis protein MotC, at 602,406 to 603,719
_RS03055
ABIE40_RS03060: ABIE40_RS03060 - flagellar hook-length control protein FliK, at 603,721 to 605,130
_RS03060
ABIE40_RS03065: ABIE40_RS03065 - transglycosylase SLT domain-containing protein, at 605,051 to 605,635
_RS03065
ABIE40_RS03070: ABIE40_RS03070 - winged helix-turn-helix domain-containing protein, at 605,917 to 606,588
_RS03070
Position (kb) 603
604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 602.736 kb on + strand, within ABIE40_RS03055 at 602.737 kb on - strand, within ABIE40_RS03055 at 602.737 kb on - strand, within ABIE40_RS03055 at 602.772 kb on + strand, within ABIE40_RS03055 at 602.773 kb on - strand, within ABIE40_RS03055 at 602.773 kb on - strand, within ABIE40_RS03055 at 602.829 kb on + strand, within ABIE40_RS03055 at 602.853 kb on + strand, within ABIE40_RS03055 at 602.853 kb on + strand, within ABIE40_RS03055 at 602.853 kb on + strand, within ABIE40_RS03055 at 602.854 kb on - strand, within ABIE40_RS03055 at 602.854 kb on - strand, within ABIE40_RS03055 at 602.854 kb on - strand, within ABIE40_RS03055 at 602.916 kb on + strand, within ABIE40_RS03055 at 602.917 kb on - strand, within ABIE40_RS03055 at 602.917 kb on - strand, within ABIE40_RS03055 at 602.917 kb on - strand, within ABIE40_RS03055 at 602.917 kb on - strand, within ABIE40_RS03055 at 602.945 kb on + strand, within ABIE40_RS03055 at 602.945 kb on + strand, within ABIE40_RS03055 at 602.946 kb on - strand, within ABIE40_RS03055 at 602.948 kb on + strand, within ABIE40_RS03055 at 602.948 kb on + strand, within ABIE40_RS03055 at 602.948 kb on + strand, within ABIE40_RS03055 at 602.949 kb on - strand, within ABIE40_RS03055 at 603.025 kb on - strand, within ABIE40_RS03055 at 603.036 kb on + strand, within ABIE40_RS03055 at 603.036 kb on + strand, within ABIE40_RS03055 at 603.036 kb on + strand, within ABIE40_RS03055 at 603.036 kb on + strand, within ABIE40_RS03055 at 603.036 kb on + strand, within ABIE40_RS03055 at 603.037 kb on - strand, within ABIE40_RS03055 at 603.037 kb on - strand, within ABIE40_RS03055 at 603.037 kb on - strand, within ABIE40_RS03055 at 603.064 kb on - strand, within ABIE40_RS03055 at 603.183 kb on + strand, within ABIE40_RS03055 at 603.184 kb on - strand, within ABIE40_RS03055 at 603.184 kb on - strand, within ABIE40_RS03055 at 603.184 kb on - strand, within ABIE40_RS03055 at 603.306 kb on + strand, within ABIE40_RS03055 at 603.306 kb on + strand, within ABIE40_RS03055 at 603.306 kb on + strand, within ABIE40_RS03055 at 603.306 kb on + strand, within ABIE40_RS03055 at 603.307 kb on - strand, within ABIE40_RS03055 at 603.307 kb on - strand, within ABIE40_RS03055 at 603.307 kb on - strand, within ABIE40_RS03055 at 603.307 kb on - strand, within ABIE40_RS03055 at 603.307 kb on - strand, within ABIE40_RS03055 at 603.314 kb on + strand, within ABIE40_RS03055 at 603.314 kb on + strand, within ABIE40_RS03055 at 603.314 kb on + strand, within ABIE40_RS03055 at 603.314 kb on + strand, within ABIE40_RS03055 at 603.315 kb on - strand, within ABIE40_RS03055 at 603.359 kb on + strand, within ABIE40_RS03055 at 603.359 kb on + strand, within ABIE40_RS03055 at 603.730 kb on - strand at 603.983 kb on + strand, within ABIE40_RS03060 at 604.080 kb on + strand, within ABIE40_RS03060 at 604.080 kb on + strand, within ABIE40_RS03060 at 604.081 kb on - strand, within ABIE40_RS03060 at 604.081 kb on - strand, within ABIE40_RS03060 at 604.081 kb on - strand, within ABIE40_RS03060 at 604.326 kb on + strand, within ABIE40_RS03060 at 604.326 kb on + strand, within ABIE40_RS03060 at 604.326 kb on + strand, within ABIE40_RS03060 at 604.326 kb on + strand, within ABIE40_RS03060 at 604.326 kb on + strand, within ABIE40_RS03060 at 604.327 kb on - strand, within ABIE40_RS03060 at 604.327 kb on - strand, within ABIE40_RS03060 at 604.327 kb on - strand, within ABIE40_RS03060 at 604.494 kb on + strand, within ABIE40_RS03060 at 604.494 kb on + strand, within ABIE40_RS03060 at 604.494 kb on + strand, within ABIE40_RS03060 at 604.495 kb on - strand, within ABIE40_RS03060 at 604.495 kb on - strand, within ABIE40_RS03060 at 604.495 kb on - strand, within ABIE40_RS03060 at 604.495 kb on - strand, within ABIE40_RS03060 at 604.495 kb on - strand, within ABIE40_RS03060 at 604.500 kb on + strand, within ABIE40_RS03060 at 604.582 kb on + strand, within ABIE40_RS03060 at 604.582 kb on + strand, within ABIE40_RS03060 at 604.582 kb on + strand, within ABIE40_RS03060 at 604.583 kb on - strand, within ABIE40_RS03060 at 604.583 kb on - strand, within ABIE40_RS03060 at 604.584 kb on + strand, within ABIE40_RS03060 at 604.585 kb on - strand, within ABIE40_RS03060 at 604.585 kb on - strand, within ABIE40_RS03060 at 604.716 kb on + strand, within ABIE40_RS03060 at 604.717 kb on - strand, within ABIE40_RS03060 at 604.717 kb on - strand, within ABIE40_RS03060 at 604.826 kb on - strand, within ABIE40_RS03060 at 604.826 kb on - strand, within ABIE40_RS03060 at 604.882 kb on + strand, within ABIE40_RS03060 at 604.883 kb on - strand, within ABIE40_RS03060 at 604.883 kb on - strand, within ABIE40_RS03060 at 604.905 kb on + strand, within ABIE40_RS03060 at 604.905 kb on + strand, within ABIE40_RS03060 at 604.906 kb on - strand, within ABIE40_RS03060 at 604.906 kb on - strand, within ABIE40_RS03060 at 604.906 kb on - strand, within ABIE40_RS03060 at 604.906 kb on - strand, within ABIE40_RS03060 at 604.906 kb on - strand, within ABIE40_RS03060 at 604.932 kb on + strand, within ABIE40_RS03060 at 605.123 kb on - strand at 605.123 kb on - strand at 605.123 kb on - strand at 605.186 kb on + strand, within ABIE40_RS03065 at 605.186 kb on + strand, within ABIE40_RS03065 at 605.187 kb on - strand, within ABIE40_RS03065 at 605.187 kb on - strand, within ABIE40_RS03065 at 605.187 kb on - strand, within ABIE40_RS03065 at 605.187 kb on - strand, within ABIE40_RS03065 at 605.210 kb on + strand, within ABIE40_RS03065 at 605.210 kb on + strand, within ABIE40_RS03065 at 605.211 kb on - strand, within ABIE40_RS03065 at 605.252 kb on + strand, within ABIE40_RS03065 at 605.252 kb on + strand, within ABIE40_RS03065 at 605.252 kb on + strand, within ABIE40_RS03065 at 605.252 kb on + strand, within ABIE40_RS03065 at 605.252 kb on + strand, within ABIE40_RS03065 at 605.253 kb on - strand, within ABIE40_RS03065 at 605.253 kb on - strand, within ABIE40_RS03065 at 605.270 kb on - strand, within ABIE40_RS03065 at 605.385 kb on - strand, within ABIE40_RS03065 at 605.385 kb on - strand, within ABIE40_RS03065 at 605.385 kb on - strand, within ABIE40_RS03065 at 605.447 kb on + strand, within ABIE40_RS03065 at 605.552 kb on + strand, within ABIE40_RS03065 at 605.552 kb on + strand, within ABIE40_RS03065 at 605.552 kb on + strand, within ABIE40_RS03065 at 605.552 kb on + strand, within ABIE40_RS03065 at 605.552 kb on + strand, within ABIE40_RS03065 at 605.552 kb on + strand, within ABIE40_RS03065 at 605.552 kb on + strand, within ABIE40_RS03065 at 605.553 kb on - strand, within ABIE40_RS03065 at 605.553 kb on - strand, within ABIE40_RS03065 at 605.553 kb on - strand, within ABIE40_RS03065 at 605.608 kb on + strand at 605.609 kb on - strand at 605.722 kb on - strand at 605.764 kb on + strand at 605.782 kb on - strand at 605.782 kb on - strand at 605.782 kb on - strand at 605.783 kb on + strand at 605.784 kb on - strand at 605.784 kb on - strand at 605.784 kb on - strand at 605.788 kb on - strand at 605.878 kb on + strand at 605.878 kb on + strand at 605.879 kb on - strand at 605.959 kb on + strand at 605.959 kb on + strand at 605.959 kb on + strand at 605.960 kb on - strand at 605.960 kb on - strand at 605.961 kb on + strand at 605.961 kb on + strand at 605.961 kb on + strand at 605.961 kb on + strand at 605.961 kb on + strand at 605.961 kb on + strand at 605.961 kb on + strand at 605.961 kb on + strand at 605.961 kb on + strand at 605.961 kb on + strand at 605.961 kb on + strand at 605.961 kb on + strand at 605.962 kb on - strand at 605.962 kb on - strand at 605.962 kb on - strand at 605.962 kb on - strand at 605.962 kb on - strand at 605.962 kb on - strand at 605.962 kb on - strand at 605.962 kb on - strand at 605.962 kb on - strand at 605.962 kb on - strand at 605.962 kb on - strand at 605.962 kb on - strand at 605.969 kb on + strand at 605.969 kb on + strand at 605.970 kb on - strand at 606.052 kb on - strand, within ABIE40_RS03070
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 602,736 + ABIE40_RS03055 0.25 -0.1 602,737 - ABIE40_RS03055 0.25 +1.7 602,737 - ABIE40_RS03055 0.25 -1.2 602,772 + ABIE40_RS03055 0.28 +1.1 602,773 - ABIE40_RS03055 0.28 -0.1 602,773 - ABIE40_RS03055 0.28 -0.0 602,829 + ABIE40_RS03055 0.32 -0.4 602,853 + ABIE40_RS03055 0.34 -0.7 602,853 + ABIE40_RS03055 0.34 -0.3 602,853 + ABIE40_RS03055 0.34 +0.0 602,854 - ABIE40_RS03055 0.34 -0.3 602,854 - ABIE40_RS03055 0.34 -0.4 602,854 - ABIE40_RS03055 0.34 -0.5 602,916 + ABIE40_RS03055 0.39 +2.6 602,917 - ABIE40_RS03055 0.39 +0.1 602,917 - ABIE40_RS03055 0.39 +0.3 602,917 - ABIE40_RS03055 0.39 +0.3 602,917 - ABIE40_RS03055 0.39 +2.0 602,945 + ABIE40_RS03055 0.41 +0.4 602,945 + ABIE40_RS03055 0.41 +1.9 602,946 - ABIE40_RS03055 0.41 -0.3 602,948 + ABIE40_RS03055 0.41 +0.0 602,948 + ABIE40_RS03055 0.41 -0.2 602,948 + ABIE40_RS03055 0.41 +0.3 602,949 - ABIE40_RS03055 0.41 -1.1 603,025 - ABIE40_RS03055 0.47 +0.0 603,036 + ABIE40_RS03055 0.48 -0.2 603,036 + ABIE40_RS03055 0.48 +1.8 603,036 + ABIE40_RS03055 0.48 -0.6 603,036 + ABIE40_RS03055 0.48 +1.6 603,036 + ABIE40_RS03055 0.48 -0.3 603,037 - ABIE40_RS03055 0.48 +1.3 603,037 - ABIE40_RS03055 0.48 +0.6 603,037 - ABIE40_RS03055 0.48 -0.6 603,064 - ABIE40_RS03055 0.50 -2.5 603,183 + ABIE40_RS03055 0.59 -0.2 603,184 - ABIE40_RS03055 0.59 +0.4 603,184 - ABIE40_RS03055 0.59 -0.7 603,184 - ABIE40_RS03055 0.59 +0.1 603,306 + ABIE40_RS03055 0.68 -1.3 603,306 + ABIE40_RS03055 0.68 +1.1 603,306 + ABIE40_RS03055 0.68 -0.9 603,306 + ABIE40_RS03055 0.68 -1.8 603,307 - ABIE40_RS03055 0.69 +3.0 603,307 - ABIE40_RS03055 0.69 +0.5 603,307 - ABIE40_RS03055 0.69 -0.3 603,307 - ABIE40_RS03055 0.69 +0.5 603,307 - ABIE40_RS03055 0.69 +0.5 603,314 + ABIE40_RS03055 0.69 +1.3 603,314 + ABIE40_RS03055 0.69 +0.8 603,314 + ABIE40_RS03055 0.69 +0.6 603,314 + ABIE40_RS03055 0.69 -0.6 603,315 - ABIE40_RS03055 0.69 -0.7 603,359 + ABIE40_RS03055 0.73 -0.0 603,359 + ABIE40_RS03055 0.73 -0.8 603,730 - +1.8 603,983 + ABIE40_RS03060 0.19 -1.1 604,080 + ABIE40_RS03060 0.25 -1.6 604,080 + ABIE40_RS03060 0.25 -1.3 604,081 - ABIE40_RS03060 0.26 -0.0 604,081 - ABIE40_RS03060 0.26 -0.0 604,081 - ABIE40_RS03060 0.26 +2.0 604,326 + ABIE40_RS03060 0.43 -0.4 604,326 + ABIE40_RS03060 0.43 +0.3 604,326 + ABIE40_RS03060 0.43 +1.3 604,326 + ABIE40_RS03060 0.43 +0.1 604,326 + ABIE40_RS03060 0.43 -0.6 604,327 - ABIE40_RS03060 0.43 +1.1 604,327 - ABIE40_RS03060 0.43 -0.7 604,327 - ABIE40_RS03060 0.43 -1.1 604,494 + ABIE40_RS03060 0.55 -2.7 604,494 + ABIE40_RS03060 0.55 -0.9 604,494 + ABIE40_RS03060 0.55 -1.1 604,495 - ABIE40_RS03060 0.55 +0.4 604,495 - ABIE40_RS03060 0.55 -0.5 604,495 - ABIE40_RS03060 0.55 -1.5 604,495 - ABIE40_RS03060 0.55 -0.0 604,495 - ABIE40_RS03060 0.55 -1.2 604,500 + ABIE40_RS03060 0.55 +0.1 604,582 + ABIE40_RS03060 0.61 +0.6 604,582 + ABIE40_RS03060 0.61 -0.8 604,582 + ABIE40_RS03060 0.61 -0.4 604,583 - ABIE40_RS03060 0.61 +0.4 604,583 - ABIE40_RS03060 0.61 -1.3 604,584 + ABIE40_RS03060 0.61 -0.3 604,585 - ABIE40_RS03060 0.61 -1.5 604,585 - ABIE40_RS03060 0.61 -1.8 604,716 + ABIE40_RS03060 0.71 -0.5 604,717 - ABIE40_RS03060 0.71 +0.6 604,717 - ABIE40_RS03060 0.71 -1.0 604,826 - ABIE40_RS03060 0.78 -2.0 604,826 - ABIE40_RS03060 0.78 -0.3 604,882 + ABIE40_RS03060 0.82 -0.2 604,883 - ABIE40_RS03060 0.82 -1.0 604,883 - ABIE40_RS03060 0.82 -0.6 604,905 + ABIE40_RS03060 0.84 -0.3 604,905 + ABIE40_RS03060 0.84 -0.9 604,906 - ABIE40_RS03060 0.84 +0.7 604,906 - ABIE40_RS03060 0.84 -1.1 604,906 - ABIE40_RS03060 0.84 -0.3 604,906 - ABIE40_RS03060 0.84 -1.3 604,906 - ABIE40_RS03060 0.84 -1.7 604,932 + ABIE40_RS03060 0.86 -0.5 605,123 - +0.5 605,123 - +2.5 605,123 - +0.2 605,186 + ABIE40_RS03065 0.23 -0.9 605,186 + ABIE40_RS03065 0.23 -0.0 605,187 - ABIE40_RS03065 0.23 +1.3 605,187 - ABIE40_RS03065 0.23 -1.0 605,187 - ABIE40_RS03065 0.23 +0.4 605,187 - ABIE40_RS03065 0.23 -0.1 605,210 + ABIE40_RS03065 0.27 +0.1 605,210 + ABIE40_RS03065 0.27 -0.1 605,211 - ABIE40_RS03065 0.27 -1.3 605,252 + ABIE40_RS03065 0.34 +0.3 605,252 + ABIE40_RS03065 0.34 -0.0 605,252 + ABIE40_RS03065 0.34 +0.3 605,252 + ABIE40_RS03065 0.34 +0.1 605,252 + ABIE40_RS03065 0.34 +0.4 605,253 - ABIE40_RS03065 0.35 +1.3 605,253 - ABIE40_RS03065 0.35 +0.5 605,270 - ABIE40_RS03065 0.37 -0.8 605,385 - ABIE40_RS03065 0.57 +0.1 605,385 - ABIE40_RS03065 0.57 -0.1 605,385 - ABIE40_RS03065 0.57 +0.4 605,447 + ABIE40_RS03065 0.68 -0.4 605,552 + ABIE40_RS03065 0.86 +0.4 605,552 + ABIE40_RS03065 0.86 +1.0 605,552 + ABIE40_RS03065 0.86 +0.8 605,552 + ABIE40_RS03065 0.86 -0.2 605,552 + ABIE40_RS03065 0.86 -1.3 605,552 + ABIE40_RS03065 0.86 +1.4 605,552 + ABIE40_RS03065 0.86 +0.7 605,553 - ABIE40_RS03065 0.86 +1.3 605,553 - ABIE40_RS03065 0.86 -0.5 605,553 - ABIE40_RS03065 0.86 +0.2 605,608 + +1.4 605,609 - -0.6 605,722 - -0.5 605,764 + -0.3 605,782 - -1.2 605,782 - -1.3 605,782 - +0.4 605,783 + -0.3 605,784 - -0.4 605,784 - -0.1 605,784 - -0.3 605,788 - +0.7 605,878 + -0.2 605,878 + -1.2 605,879 - -1.2 605,959 + -1.3 605,959 + -0.9 605,959 + +0.6 605,960 - -1.0 605,960 - +2.0 605,961 + -0.3 605,961 + -2.1 605,961 + -1.2 605,961 + -1.2 605,961 + -2.1 605,961 + -0.9 605,961 + -1.1 605,961 + -1.3 605,961 + -1.9 605,961 + -0.9 605,961 + +1.3 605,961 + -1.2 605,962 - -1.0 605,962 - -0.3 605,962 - -2.0 605,962 - -0.6 605,962 - -1.5 605,962 - +0.4 605,962 - +0.9 605,962 - -1.5 605,962 - -2.0 605,962 - -0.7 605,962 - -0.3 605,962 - -1.8 605,969 + -0.6 605,969 + -0.8 605,970 - +0.1 606,052 - ABIE40_RS03070 0.20 -0.0
Or see this region's nucleotide sequence