Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02965 and ABIE40_RS02970 are separated by 164 nucleotides ABIE40_RS02970 and ABIE40_RS02975 are separated by 4 nucleotides ABIE40_RS02975 and ABIE40_RS02980 overlap by 1 nucleotides ABIE40_RS02980 and ABIE40_RS02985 are separated by 18 nucleotides
ABIE40_RS02965: ABIE40_RS02965 - flagellar protein, at 586,625 to 587,176
_RS02965
ABIE40_RS02970: ABIE40_RS02970 - flagellar basal body rod protein FlgB, at 587,341 to 587,733
_RS02970
ABIE40_RS02975: ABIE40_RS02975 - flagellar basal body rod protein FlgC, at 587,738 to 588,154
_RS02975
ABIE40_RS02980: ABIE40_RS02980 - flagellar hook-basal body complex protein FliE, at 588,154 to 588,486
_RS02980
ABIE40_RS02985: ABIE40_RS02985 - flagellar basal-body rod protein FlgG, at 588,505 to 589,293
_RS02985
Position (kb) 587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 586.760 kb on + strand, within ABIE40_RS02965 at 586.760 kb on + strand, within ABIE40_RS02965 at 586.760 kb on + strand, within ABIE40_RS02965 at 586.760 kb on + strand, within ABIE40_RS02965 at 586.760 kb on + strand, within ABIE40_RS02965 at 586.760 kb on + strand, within ABIE40_RS02965 at 586.761 kb on - strand, within ABIE40_RS02965 at 586.761 kb on - strand, within ABIE40_RS02965 at 586.761 kb on - strand, within ABIE40_RS02965 at 586.761 kb on - strand, within ABIE40_RS02965 at 586.761 kb on - strand, within ABIE40_RS02965 at 586.761 kb on - strand, within ABIE40_RS02965 at 586.795 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.066 kb on + strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.067 kb on - strand, within ABIE40_RS02965 at 587.168 kb on + strand at 587.168 kb on + strand at 587.168 kb on + strand at 587.169 kb on - strand at 587.169 kb on - strand at 587.174 kb on + strand at 587.175 kb on - strand at 587.175 kb on - strand at 587.668 kb on + strand, within ABIE40_RS02970 at 587.700 kb on + strand at 587.723 kb on + strand at 587.724 kb on - strand at 587.724 kb on - strand at 587.731 kb on + strand at 587.732 kb on - strand at 587.748 kb on + strand at 587.749 kb on - strand at 587.749 kb on - strand at 587.884 kb on + strand, within ABIE40_RS02975 at 587.884 kb on + strand, within ABIE40_RS02975 at 587.885 kb on - strand, within ABIE40_RS02975 at 587.885 kb on - strand, within ABIE40_RS02975 at 587.885 kb on - strand, within ABIE40_RS02975 at 587.885 kb on - strand, within ABIE40_RS02975 at 587.975 kb on + strand, within ABIE40_RS02975 at 587.976 kb on - strand, within ABIE40_RS02975 at 587.977 kb on - strand, within ABIE40_RS02975 at 588.077 kb on + strand, within ABIE40_RS02975 at 588.077 kb on + strand, within ABIE40_RS02975 at 588.077 kb on + strand, within ABIE40_RS02975 at 588.077 kb on + strand, within ABIE40_RS02975 at 588.077 kb on + strand, within ABIE40_RS02975 at 588.078 kb on - strand, within ABIE40_RS02975 at 588.078 kb on - strand, within ABIE40_RS02975 at 588.078 kb on - strand, within ABIE40_RS02975 at 588.152 kb on + strand at 588.167 kb on + strand at 588.167 kb on + strand at 588.167 kb on + strand at 588.167 kb on + strand at 588.167 kb on + strand at 588.168 kb on - strand at 588.168 kb on - strand at 588.168 kb on - strand at 588.314 kb on + strand, within ABIE40_RS02980 at 588.314 kb on + strand, within ABIE40_RS02980 at 588.315 kb on - strand, within ABIE40_RS02980 at 588.315 kb on - strand, within ABIE40_RS02980 at 588.323 kb on + strand, within ABIE40_RS02980 at 588.323 kb on + strand, within ABIE40_RS02980 at 588.484 kb on + strand at 588.484 kb on + strand at 588.484 kb on + strand at 588.485 kb on - strand at 588.485 kb on - strand at 588.485 kb on - strand at 588.637 kb on + strand, within ABIE40_RS02985 at 588.638 kb on - strand, within ABIE40_RS02985 at 588.638 kb on - strand, within ABIE40_RS02985 at 588.705 kb on + strand, within ABIE40_RS02985 at 588.706 kb on - strand, within ABIE40_RS02985 at 588.844 kb on + strand, within ABIE40_RS02985 at 588.845 kb on - strand, within ABIE40_RS02985 at 588.845 kb on - strand, within ABIE40_RS02985 at 588.904 kb on + strand, within ABIE40_RS02985 at 588.904 kb on + strand, within ABIE40_RS02985 at 588.904 kb on + strand, within ABIE40_RS02985 at 588.904 kb on + strand, within ABIE40_RS02985 at 588.905 kb on - strand, within ABIE40_RS02985 at 588.905 kb on - strand, within ABIE40_RS02985 at 588.905 kb on - strand, within ABIE40_RS02985 at 588.907 kb on - strand, within ABIE40_RS02985 at 588.907 kb on - strand, within ABIE40_RS02985 at 589.135 kb on + strand, within ABIE40_RS02985 at 589.135 kb on + strand, within ABIE40_RS02985 at 589.136 kb on - strand, within ABIE40_RS02985 at 589.136 kb on - strand, within ABIE40_RS02985 at 589.141 kb on + strand, within ABIE40_RS02985 at 589.141 kb on + strand, within ABIE40_RS02985 at 589.141 kb on + strand, within ABIE40_RS02985 at 589.142 kb on - strand, within ABIE40_RS02985 at 589.142 kb on - strand, within ABIE40_RS02985
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 586,760 + ABIE40_RS02965 0.24 +1.1 586,760 + ABIE40_RS02965 0.24 -0.5 586,760 + ABIE40_RS02965 0.24 +1.9 586,760 + ABIE40_RS02965 0.24 -1.3 586,760 + ABIE40_RS02965 0.24 -0.4 586,760 + ABIE40_RS02965 0.24 +0.8 586,761 - ABIE40_RS02965 0.25 +0.1 586,761 - ABIE40_RS02965 0.25 +3.2 586,761 - ABIE40_RS02965 0.25 -0.6 586,761 - ABIE40_RS02965 0.25 +0.0 586,761 - ABIE40_RS02965 0.25 -0.8 586,761 - ABIE40_RS02965 0.25 +0.6 586,795 + ABIE40_RS02965 0.31 +2.2 587,066 + ABIE40_RS02965 0.80 +0.5 587,066 + ABIE40_RS02965 0.80 +0.1 587,066 + ABIE40_RS02965 0.80 +1.6 587,066 + ABIE40_RS02965 0.80 +0.4 587,066 + ABIE40_RS02965 0.80 -0.0 587,066 + ABIE40_RS02965 0.80 -0.0 587,066 + ABIE40_RS02965 0.80 +0.9 587,066 + ABIE40_RS02965 0.80 +0.2 587,066 + ABIE40_RS02965 0.80 -1.2 587,066 + ABIE40_RS02965 0.80 +0.6 587,066 + ABIE40_RS02965 0.80 +0.2 587,066 + ABIE40_RS02965 0.80 +0.4 587,066 + ABIE40_RS02965 0.80 +0.2 587,066 + ABIE40_RS02965 0.80 +0.2 587,066 + ABIE40_RS02965 0.80 +0.5 587,066 + ABIE40_RS02965 0.80 +0.9 587,066 + ABIE40_RS02965 0.80 -0.1 587,066 + ABIE40_RS02965 0.80 +0.7 587,067 - ABIE40_RS02965 0.80 +2.3 587,067 - ABIE40_RS02965 0.80 +2.0 587,067 - ABIE40_RS02965 0.80 -0.3 587,067 - ABIE40_RS02965 0.80 -0.7 587,067 - ABIE40_RS02965 0.80 +0.5 587,067 - ABIE40_RS02965 0.80 -0.2 587,067 - ABIE40_RS02965 0.80 -0.6 587,067 - ABIE40_RS02965 0.80 -2.6 587,067 - ABIE40_RS02965 0.80 -0.1 587,067 - ABIE40_RS02965 0.80 -0.2 587,067 - ABIE40_RS02965 0.80 -1.1 587,067 - ABIE40_RS02965 0.80 +0.4 587,067 - ABIE40_RS02965 0.80 -1.6 587,067 - ABIE40_RS02965 0.80 +2.1 587,168 + -0.1 587,168 + +0.6 587,168 + -0.3 587,169 - +1.3 587,169 - -1.6 587,174 + +1.5 587,175 - +1.5 587,175 - -0.7 587,668 + ABIE40_RS02970 0.83 +1.1 587,700 + -0.7 587,723 + -0.7 587,724 - -1.3 587,724 - -0.0 587,731 + +0.9 587,732 - -0.2 587,748 + -0.2 587,749 - -0.0 587,749 - -1.7 587,884 + ABIE40_RS02975 0.35 -1.1 587,884 + ABIE40_RS02975 0.35 -0.2 587,885 - ABIE40_RS02975 0.35 -0.7 587,885 - ABIE40_RS02975 0.35 -0.6 587,885 - ABIE40_RS02975 0.35 -0.7 587,885 - ABIE40_RS02975 0.35 -0.2 587,975 + ABIE40_RS02975 0.57 -2.0 587,976 - ABIE40_RS02975 0.57 -0.5 587,977 - ABIE40_RS02975 0.57 -1.1 588,077 + ABIE40_RS02975 0.81 -0.2 588,077 + ABIE40_RS02975 0.81 +0.4 588,077 + ABIE40_RS02975 0.81 -1.8 588,077 + ABIE40_RS02975 0.81 -0.6 588,077 + ABIE40_RS02975 0.81 +0.4 588,078 - ABIE40_RS02975 0.82 -0.7 588,078 - ABIE40_RS02975 0.82 +0.3 588,078 - ABIE40_RS02975 0.82 -1.6 588,152 + -1.3 588,167 + -0.0 588,167 + -2.5 588,167 + -1.2 588,167 + -3.7 588,167 + -2.8 588,168 - +0.1 588,168 - +1.0 588,168 - -2.0 588,314 + ABIE40_RS02980 0.48 -1.1 588,314 + ABIE40_RS02980 0.48 -1.7 588,315 - ABIE40_RS02980 0.48 -0.7 588,315 - ABIE40_RS02980 0.48 -0.0 588,323 + ABIE40_RS02980 0.51 +0.3 588,323 + ABIE40_RS02980 0.51 +0.1 588,484 + +1.0 588,484 + +0.1 588,484 + -0.5 588,485 - -0.8 588,485 - -0.1 588,485 - -0.8 588,637 + ABIE40_RS02985 0.17 -1.6 588,638 - ABIE40_RS02985 0.17 -0.7 588,638 - ABIE40_RS02985 0.17 -1.5 588,705 + ABIE40_RS02985 0.25 -0.7 588,706 - ABIE40_RS02985 0.25 -0.2 588,844 + ABIE40_RS02985 0.43 -0.5 588,845 - ABIE40_RS02985 0.43 +0.0 588,845 - ABIE40_RS02985 0.43 -0.7 588,904 + ABIE40_RS02985 0.51 -0.9 588,904 + ABIE40_RS02985 0.51 -0.9 588,904 + ABIE40_RS02985 0.51 +0.4 588,904 + ABIE40_RS02985 0.51 -0.9 588,905 - ABIE40_RS02985 0.51 +0.4 588,905 - ABIE40_RS02985 0.51 -1.3 588,905 - ABIE40_RS02985 0.51 -0.5 588,907 - ABIE40_RS02985 0.51 -1.8 588,907 - ABIE40_RS02985 0.51 -0.5 589,135 + ABIE40_RS02985 0.80 -1.2 589,135 + ABIE40_RS02985 0.80 -0.6 589,136 - ABIE40_RS02985 0.80 -0.0 589,136 - ABIE40_RS02985 0.80 -0.6 589,141 + ABIE40_RS02985 0.81 -1.9 589,141 + ABIE40_RS02985 0.81 -0.5 589,141 + ABIE40_RS02985 0.81 -0.2 589,142 - ABIE40_RS02985 0.81 -0.6 589,142 - ABIE40_RS02985 0.81 -0.5
Or see this region's nucleotide sequence