Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS23045

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS23040 and ABIE40_RS23045 are separated by 9 nucleotidesABIE40_RS23045 and ABIE40_RS23050 are separated by 234 nucleotides ABIE40_RS23040: ABIE40_RS23040 - flagellar hook-associated family protein, at 756,828 to 757,874 _RS23040 ABIE40_RS23045: ABIE40_RS23045 - hypothetical protein, at 757,884 to 758,267 _RS23045 ABIE40_RS23050: ABIE40_RS23050 - DUF6502 family protein, at 758,502 to 759,356 _RS23050 Position (kb) 757 758 759Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 756.940 kb on - strand, within ABIE40_RS23040at 756.940 kb on - strand, within ABIE40_RS23040at 757.182 kb on - strand, within ABIE40_RS23040at 757.182 kb on - strand, within ABIE40_RS23040at 757.211 kb on + strand, within ABIE40_RS23040at 757.211 kb on + strand, within ABIE40_RS23040at 757.211 kb on + strand, within ABIE40_RS23040at 757.212 kb on - strand, within ABIE40_RS23040at 757.212 kb on - strand, within ABIE40_RS23040at 757.212 kb on - strand, within ABIE40_RS23040at 757.212 kb on - strand, within ABIE40_RS23040at 757.320 kb on + strand, within ABIE40_RS23040at 757.321 kb on - strand, within ABIE40_RS23040at 757.321 kb on - strand, within ABIE40_RS23040at 757.533 kb on + strand, within ABIE40_RS23040at 757.534 kb on - strand, within ABIE40_RS23040at 757.626 kb on + strand, within ABIE40_RS23040at 757.626 kb on + strand, within ABIE40_RS23040at 757.626 kb on + strand, within ABIE40_RS23040at 757.627 kb on - strand, within ABIE40_RS23040at 757.734 kb on + strand, within ABIE40_RS23040at 757.735 kb on - strand, within ABIE40_RS23040at 757.773 kb on + strandat 757.773 kb on + strandat 757.773 kb on + strandat 757.773 kb on + strandat 757.773 kb on + strandat 757.773 kb on + strandat 757.774 kb on - strandat 757.774 kb on - strandat 757.824 kb on + strandat 757.826 kb on + strandat 757.826 kb on + strandat 757.826 kb on + strandat 757.826 kb on + strandat 757.826 kb on + strandat 757.826 kb on + strandat 757.827 kb on - strandat 757.827 kb on - strandat 757.827 kb on - strandat 757.827 kb on - strandat 757.827 kb on - strandat 757.827 kb on - strandat 757.827 kb on - strandat 757.827 kb on - strandat 757.866 kb on + strandat 757.867 kb on - strandat 757.867 kb on - strandat 757.950 kb on + strand, within ABIE40_RS23045at 757.950 kb on + strand, within ABIE40_RS23045at 757.950 kb on + strand, within ABIE40_RS23045at 757.951 kb on - strand, within ABIE40_RS23045at 757.951 kb on - strand, within ABIE40_RS23045at 757.951 kb on - strand, within ABIE40_RS23045at 757.951 kb on - strand, within ABIE40_RS23045at 757.951 kb on - strand, within ABIE40_RS23045at 757.951 kb on - strand, within ABIE40_RS23045at 757.951 kb on - strand, within ABIE40_RS23045at 757.951 kb on - strand, within ABIE40_RS23045at 757.951 kb on - strand, within ABIE40_RS23045at 757.951 kb on - strand, within ABIE40_RS23045at 757.951 kb on - strand, within ABIE40_RS23045at 757.952 kb on + strand, within ABIE40_RS23045at 757.952 kb on + strand, within ABIE40_RS23045at 757.952 kb on + strand, within ABIE40_RS23045at 757.952 kb on + strand, within ABIE40_RS23045at 757.952 kb on + strand, within ABIE40_RS23045at 757.952 kb on + strand, within ABIE40_RS23045at 757.952 kb on + strand, within ABIE40_RS23045at 757.953 kb on - strand, within ABIE40_RS23045at 757.953 kb on - strand, within ABIE40_RS23045at 757.953 kb on - strand, within ABIE40_RS23045at 757.953 kb on - strand, within ABIE40_RS23045at 757.953 kb on - strand, within ABIE40_RS23045at 757.982 kb on + strand, within ABIE40_RS23045at 757.982 kb on + strand, within ABIE40_RS23045at 757.983 kb on - strand, within ABIE40_RS23045at 757.983 kb on - strand, within ABIE40_RS23045at 757.986 kb on - strand, within ABIE40_RS23045at 758.007 kb on - strand, within ABIE40_RS23045at 758.252 kb on + strandat 758.252 kb on + strandat 758.252 kb on + strandat 758.283 kb on + strandat 758.283 kb on + strandat 758.284 kb on - strandat 758.310 kb on - strandat 758.349 kb on + strandat 758.350 kb on - strandat 758.381 kb on + strandat 758.381 kb on + strandat 758.382 kb on - strandat 758.382 kb on - strandat 758.444 kb on - strandat 758.464 kb on + strandat 758.465 kb on - strandat 758.465 kb on - strandat 758.465 kb on - strandat 758.485 kb on + strandat 758.485 kb on + strandat 758.485 kb on + strandat 758.486 kb on - strandat 758.494 kb on + strandat 758.494 kb on + strandat 758.495 kb on - strandat 758.496 kb on + strandat 758.496 kb on + strandat 758.496 kb on + strandat 758.497 kb on - strandat 758.497 kb on - strandat 758.643 kb on + strand, within ABIE40_RS23050at 758.643 kb on + strand, within ABIE40_RS23050at 758.643 kb on + strand, within ABIE40_RS23050at 758.644 kb on - strand, within ABIE40_RS23050at 758.835 kb on + strand, within ABIE40_RS23050at 758.835 kb on + strand, within ABIE40_RS23050at 758.835 kb on + strand, within ABIE40_RS23050at 758.980 kb on + strand, within ABIE40_RS23050at 758.980 kb on + strand, within ABIE40_RS23050at 759.057 kb on + strand, within ABIE40_RS23050at 759.058 kb on - strand, within ABIE40_RS23050at 759.058 kb on - strand, within ABIE40_RS23050at 759.188 kb on + strand, within ABIE40_RS23050

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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756,940 - ABIE40_RS23040 0.11 +0.3
756,940 - ABIE40_RS23040 0.11 +0.3
757,182 - ABIE40_RS23040 0.34 +0.1
757,182 - ABIE40_RS23040 0.34 +0.3
757,211 + ABIE40_RS23040 0.37 +0.0
757,211 + ABIE40_RS23040 0.37 -1.8
757,211 + ABIE40_RS23040 0.37 -0.3
757,212 - ABIE40_RS23040 0.37 -1.0
757,212 - ABIE40_RS23040 0.37 +0.4
757,212 - ABIE40_RS23040 0.37 +0.1
757,212 - ABIE40_RS23040 0.37 +0.5
757,320 + ABIE40_RS23040 0.47 +0.4
757,321 - ABIE40_RS23040 0.47 -1.3
757,321 - ABIE40_RS23040 0.47 +0.0
757,533 + ABIE40_RS23040 0.67 -1.0
757,534 - ABIE40_RS23040 0.67 -1.1
757,626 + ABIE40_RS23040 0.76 -0.5
757,626 + ABIE40_RS23040 0.76 +0.2
757,626 + ABIE40_RS23040 0.76 -2.2
757,627 - ABIE40_RS23040 0.76 -0.4
757,734 + ABIE40_RS23040 0.87 +2.0
757,735 - ABIE40_RS23040 0.87 +0.0
757,773 + -0.4
757,773 + -0.4
757,773 + +0.4
757,773 + +0.4
757,773 + -0.5
757,773 + +0.6
757,774 - -0.2
757,774 - -1.0
757,824 + +1.1
757,826 + -0.2
757,826 + -0.3
757,826 + -1.7
757,826 + +1.0
757,826 + +2.5
757,826 + +0.0
757,827 - +0.2
757,827 - -0.1
757,827 - -1.5
757,827 - +0.6
757,827 - +0.0
757,827 - -1.7
757,827 - +0.2
757,827 - +0.1
757,866 + +0.2
757,867 - +1.6
757,867 - -0.1
757,950 + ABIE40_RS23045 0.17 -0.6
757,950 + ABIE40_RS23045 0.17 +2.0
757,950 + ABIE40_RS23045 0.17 -0.1
757,951 - ABIE40_RS23045 0.17 +2.0
757,951 - ABIE40_RS23045 0.17 +0.1
757,951 - ABIE40_RS23045 0.17 +1.1
757,951 - ABIE40_RS23045 0.17 +0.4
757,951 - ABIE40_RS23045 0.17 +0.4
757,951 - ABIE40_RS23045 0.17 +0.9
757,951 - ABIE40_RS23045 0.17 +3.6
757,951 - ABIE40_RS23045 0.17 +0.4
757,951 - ABIE40_RS23045 0.17 +0.2
757,951 - ABIE40_RS23045 0.17 -0.6
757,951 - ABIE40_RS23045 0.17 +0.6
757,952 + ABIE40_RS23045 0.18 +0.1
757,952 + ABIE40_RS23045 0.18 +0.8
757,952 + ABIE40_RS23045 0.18 +0.7
757,952 + ABIE40_RS23045 0.18 +1.0
757,952 + ABIE40_RS23045 0.18 +0.4
757,952 + ABIE40_RS23045 0.18 +1.2
757,952 + ABIE40_RS23045 0.18 +1.6
757,953 - ABIE40_RS23045 0.18 +0.2
757,953 - ABIE40_RS23045 0.18 +0.8
757,953 - ABIE40_RS23045 0.18 +0.2
757,953 - ABIE40_RS23045 0.18 -1.7
757,953 - ABIE40_RS23045 0.18 +1.0
757,982 + ABIE40_RS23045 0.26 -0.4
757,982 + ABIE40_RS23045 0.26 +0.2
757,983 - ABIE40_RS23045 0.26 -2.2
757,983 - ABIE40_RS23045 0.26 -1.4
757,986 - ABIE40_RS23045 0.27 +0.1
758,007 - ABIE40_RS23045 0.32 +0.0
758,252 + +0.5
758,252 + +0.3
758,252 + +0.6
758,283 + +0.5
758,283 + +1.2
758,284 - -0.3
758,310 - -0.6
758,349 + -1.0
758,350 - -0.9
758,381 + -0.3
758,381 + +1.0
758,382 - +0.2
758,382 - -0.3
758,444 - -0.1
758,464 + +0.0
758,465 - +1.4
758,465 - +1.0
758,465 - +0.4
758,485 + -0.6
758,485 + -0.2
758,485 + -0.1
758,486 - -0.5
758,494 + -1.0
758,494 + +0.3
758,495 - -0.2
758,496 + -0.7
758,496 + +4.0
758,496 + +0.5
758,497 - -0.1
758,497 - +0.4
758,643 + ABIE40_RS23050 0.16 -0.1
758,643 + ABIE40_RS23050 0.16 +0.4
758,643 + ABIE40_RS23050 0.16 +0.7
758,644 - ABIE40_RS23050 0.17 -0.0
758,835 + ABIE40_RS23050 0.39 +0.1
758,835 + ABIE40_RS23050 0.39 -0.3
758,835 + ABIE40_RS23050 0.39 -0.4
758,980 + ABIE40_RS23050 0.56 +1.3
758,980 + ABIE40_RS23050 0.56 -0.8
759,057 + ABIE40_RS23050 0.65 +0.6
759,058 - ABIE40_RS23050 0.65 +0.2
759,058 - ABIE40_RS23050 0.65 -0.0
759,188 + ABIE40_RS23050 0.80 +0.7

Or see this region's nucleotide sequence