Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20210 and ABIE40_RS20215 are separated by 151 nucleotides ABIE40_RS20215 and ABIE40_RS20220 are separated by 29 nucleotides ABIE40_RS20220 and ABIE40_RS20225 are separated by 110 nucleotides ABIE40_RS20225 and ABIE40_RS20230 are separated by 4 nucleotides
ABIE40_RS20210: ABIE40_RS20210 - MFS transporter, at 143,222 to 144,397
_RS20210
ABIE40_RS20215: ABIE40_RS20215 - glutamine cyclotransferase, at 144,549 to 145,184
_RS20215
ABIE40_RS20220: ABIE40_RS20220 - helix-turn-helix domain-containing protein, at 145,214 to 146,434
_RS20220
ABIE40_RS20225: ABIE40_RS20225 - DUF899 domain-containing protein, at 146,545 to 147,339
_RS20225
ABIE40_RS20230: ABIE40_RS20230 - hypothetical protein, at 147,344 to 147,619
_RS20230
Position (kb) 145
146
147 Strain fitness (log2 ratio) -2
-1
0
1
2 at 144.327 kb on - strand at 144.475 kb on + strand at 144.771 kb on + strand, within ABIE40_RS20215 at 144.985 kb on + strand, within ABIE40_RS20215 at 144.985 kb on + strand, within ABIE40_RS20215 at 144.985 kb on + strand, within ABIE40_RS20215 at 145.150 kb on + strand at 145.151 kb on - strand at 145.151 kb on - strand at 145.216 kb on - strand at 145.216 kb on - strand at 145.216 kb on - strand at 145.241 kb on + strand at 145.241 kb on + strand at 145.278 kb on - strand at 145.516 kb on + strand, within ABIE40_RS20220 at 145.516 kb on + strand, within ABIE40_RS20220 at 146.024 kb on + strand, within ABIE40_RS20220 at 146.025 kb on - strand, within ABIE40_RS20220 at 146.075 kb on + strand, within ABIE40_RS20220 at 146.221 kb on + strand, within ABIE40_RS20220 at 146.221 kb on + strand, within ABIE40_RS20220 at 146.221 kb on + strand, within ABIE40_RS20220 at 146.221 kb on + strand, within ABIE40_RS20220 at 146.222 kb on - strand, within ABIE40_RS20220 at 146.454 kb on + strand at 146.454 kb on + strand at 146.454 kb on + strand at 146.455 kb on - strand at 146.482 kb on + strand at 146.483 kb on - strand at 146.483 kb on - strand at 146.483 kb on - strand at 146.488 kb on - strand at 146.566 kb on - strand at 146.566 kb on - strand at 146.690 kb on - strand, within ABIE40_RS20225 at 146.712 kb on + strand, within ABIE40_RS20225 at 146.712 kb on + strand, within ABIE40_RS20225 at 146.713 kb on - strand, within ABIE40_RS20225 at 146.761 kb on + strand, within ABIE40_RS20225 at 146.762 kb on - strand, within ABIE40_RS20225 at 146.785 kb on + strand, within ABIE40_RS20225 at 146.785 kb on + strand, within ABIE40_RS20225 at 146.786 kb on - strand, within ABIE40_RS20225 at 146.786 kb on - strand, within ABIE40_RS20225 at 146.787 kb on + strand, within ABIE40_RS20225 at 146.787 kb on + strand, within ABIE40_RS20225 at 146.788 kb on - strand, within ABIE40_RS20225 at 146.788 kb on - strand, within ABIE40_RS20225 at 146.849 kb on + strand, within ABIE40_RS20225 at 146.849 kb on + strand, within ABIE40_RS20225 at 146.850 kb on - strand, within ABIE40_RS20225 at 147.025 kb on + strand, within ABIE40_RS20225 at 147.025 kb on + strand, within ABIE40_RS20225 at 147.026 kb on - strand, within ABIE40_RS20225 at 147.026 kb on - strand, within ABIE40_RS20225 at 147.031 kb on + strand, within ABIE40_RS20225 at 147.032 kb on - strand, within ABIE40_RS20225 at 147.032 kb on - strand, within ABIE40_RS20225 at 147.032 kb on - strand, within ABIE40_RS20225 at 147.032 kb on - strand, within ABIE40_RS20225 at 147.154 kb on + strand, within ABIE40_RS20225 at 147.154 kb on + strand, within ABIE40_RS20225 at 147.155 kb on - strand, within ABIE40_RS20225 at 147.155 kb on - strand, within ABIE40_RS20225 at 147.155 kb on - strand, within ABIE40_RS20225 at 147.208 kb on + strand, within ABIE40_RS20225 at 147.209 kb on - strand, within ABIE40_RS20225 at 147.217 kb on + strand, within ABIE40_RS20225 at 147.217 kb on + strand, within ABIE40_RS20225 at 147.217 kb on + strand, within ABIE40_RS20225 at 147.217 kb on + strand, within ABIE40_RS20225 at 147.217 kb on + strand, within ABIE40_RS20225 at 147.217 kb on + strand, within ABIE40_RS20225 at 147.217 kb on + strand, within ABIE40_RS20225 at 147.217 kb on + strand, within ABIE40_RS20225 at 147.218 kb on - strand, within ABIE40_RS20225 at 147.218 kb on - strand, within ABIE40_RS20225 at 147.218 kb on - strand, within ABIE40_RS20225 at 147.259 kb on + strand, within ABIE40_RS20225 at 147.259 kb on + strand, within ABIE40_RS20225 at 147.259 kb on + strand, within ABIE40_RS20225 at 147.259 kb on + strand, within ABIE40_RS20225 at 147.259 kb on + strand, within ABIE40_RS20225 at 147.259 kb on + strand, within ABIE40_RS20225 at 147.260 kb on - strand at 147.260 kb on - strand at 147.260 kb on - strand at 147.260 kb on - strand at 147.260 kb on - strand at 147.260 kb on - strand at 147.260 kb on - strand at 147.260 kb on - strand at 147.338 kb on - strand at 147.395 kb on + strand, within ABIE40_RS20230 at 147.395 kb on + strand, within ABIE40_RS20230 at 147.395 kb on + strand, within ABIE40_RS20230
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 144,327 - -2.0 144,475 + -0.1 144,771 + ABIE40_RS20215 0.35 -0.3 144,985 + ABIE40_RS20215 0.69 -0.4 144,985 + ABIE40_RS20215 0.69 +0.5 144,985 + ABIE40_RS20215 0.69 +2.5 145,150 + +0.2 145,151 - +1.3 145,151 - -1.3 145,216 - +0.9 145,216 - +0.6 145,216 - -0.1 145,241 + -0.3 145,241 + -0.6 145,278 - +0.9 145,516 + ABIE40_RS20220 0.25 -0.2 145,516 + ABIE40_RS20220 0.25 +1.5 146,024 + ABIE40_RS20220 0.66 -0.1 146,025 - ABIE40_RS20220 0.66 +0.2 146,075 + ABIE40_RS20220 0.71 +0.9 146,221 + ABIE40_RS20220 0.82 +2.5 146,221 + ABIE40_RS20220 0.82 -0.9 146,221 + ABIE40_RS20220 0.82 -0.1 146,221 + ABIE40_RS20220 0.82 -0.7 146,222 - ABIE40_RS20220 0.83 +1.1 146,454 + +2.2 146,454 + +0.3 146,454 + +0.6 146,455 - +0.6 146,482 + +1.0 146,483 - -0.7 146,483 - +0.1 146,483 - +0.3 146,488 - -1.1 146,566 - -1.1 146,566 - +0.6 146,690 - ABIE40_RS20225 0.18 +0.8 146,712 + ABIE40_RS20225 0.21 -1.4 146,712 + ABIE40_RS20225 0.21 +0.6 146,713 - ABIE40_RS20225 0.21 -1.3 146,761 + ABIE40_RS20225 0.27 +0.5 146,762 - ABIE40_RS20225 0.27 +0.9 146,785 + ABIE40_RS20225 0.30 +0.8 146,785 + ABIE40_RS20225 0.30 +1.9 146,786 - ABIE40_RS20225 0.30 -0.2 146,786 - ABIE40_RS20225 0.30 +0.2 146,787 + ABIE40_RS20225 0.30 -0.5 146,787 + ABIE40_RS20225 0.30 -0.0 146,788 - ABIE40_RS20225 0.31 +1.2 146,788 - ABIE40_RS20225 0.31 +0.6 146,849 + ABIE40_RS20225 0.38 +1.3 146,849 + ABIE40_RS20225 0.38 +0.6 146,850 - ABIE40_RS20225 0.38 -1.1 147,025 + ABIE40_RS20225 0.60 -0.0 147,025 + ABIE40_RS20225 0.60 +0.5 147,026 - ABIE40_RS20225 0.61 -0.3 147,026 - ABIE40_RS20225 0.61 +0.5 147,031 + ABIE40_RS20225 0.61 -0.6 147,032 - ABIE40_RS20225 0.61 -2.6 147,032 - ABIE40_RS20225 0.61 -0.9 147,032 - ABIE40_RS20225 0.61 -0.4 147,032 - ABIE40_RS20225 0.61 +0.5 147,154 + ABIE40_RS20225 0.77 -0.2 147,154 + ABIE40_RS20225 0.77 +0.2 147,155 - ABIE40_RS20225 0.77 +0.8 147,155 - ABIE40_RS20225 0.77 +0.9 147,155 - ABIE40_RS20225 0.77 +1.2 147,208 + ABIE40_RS20225 0.83 +0.6 147,209 - ABIE40_RS20225 0.84 +2.5 147,217 + ABIE40_RS20225 0.85 -0.3 147,217 + ABIE40_RS20225 0.85 +0.4 147,217 + ABIE40_RS20225 0.85 -1.3 147,217 + ABIE40_RS20225 0.85 +0.6 147,217 + ABIE40_RS20225 0.85 -0.8 147,217 + ABIE40_RS20225 0.85 -0.1 147,217 + ABIE40_RS20225 0.85 -0.1 147,217 + ABIE40_RS20225 0.85 +0.9 147,218 - ABIE40_RS20225 0.85 +0.9 147,218 - ABIE40_RS20225 0.85 -0.1 147,218 - ABIE40_RS20225 0.85 +0.3 147,259 + ABIE40_RS20225 0.90 +0.1 147,259 + ABIE40_RS20225 0.90 -0.1 147,259 + ABIE40_RS20225 0.90 -0.1 147,259 + ABIE40_RS20225 0.90 -0.4 147,259 + ABIE40_RS20225 0.90 -0.1 147,259 + ABIE40_RS20225 0.90 +0.2 147,260 - +0.7 147,260 - -0.3 147,260 - -0.1 147,260 - +0.0 147,260 - -1.1 147,260 - -0.7 147,260 - -0.1 147,260 - -0.7 147,338 - +0.3 147,395 + ABIE40_RS20230 0.18 +1.4 147,395 + ABIE40_RS20230 0.18 -0.1 147,395 + ABIE40_RS20230 0.18 +0.7
Or see this region's nucleotide sequence