Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29640 and ABIE40_RS29645 are separated by 10 nucleotides ABIE40_RS29645 and ABIE40_RS29650 are separated by 43 nucleotides ABIE40_RS29650 and ABIE40_RS29655 are separated by 555 nucleotides
ABIE40_RS29640: ABIE40_RS29640 - dihydroorotase family protein, at 624,840 to 626,174
_RS29640
ABIE40_RS29645: ABIE40_RS29645 - SDR family oxidoreductase, at 626,185 to 626,958
_RS29645
ABIE40_RS29650: ABIE40_RS29650 - SDR family oxidoreductase, at 627,002 to 627,787
_RS29650
ABIE40_RS29655: ABIE40_RS29655 - helix-turn-helix transcriptional regulator, at 628,343 to 628,756
_RS29655
Position (kb) 627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 626.048 kb on + strand at 626.049 kb on - strand at 626.049 kb on - strand at 626.049 kb on - strand at 626.049 kb on - strand at 626.049 kb on - strand at 626.049 kb on - strand at 626.169 kb on + strand at 626.169 kb on + strand at 626.170 kb on - strand at 626.172 kb on + strand at 626.172 kb on + strand at 626.173 kb on - strand at 626.184 kb on + strand at 626.184 kb on + strand at 626.185 kb on - strand at 626.185 kb on - strand at 626.185 kb on - strand at 626.185 kb on - strand at 626.185 kb on - strand at 626.192 kb on + strand at 626.192 kb on + strand at 626.255 kb on + strand at 626.255 kb on + strand at 626.256 kb on - strand at 626.260 kb on + strand at 626.261 kb on - strand at 626.384 kb on + strand, within ABIE40_RS29645 at 626.384 kb on + strand, within ABIE40_RS29645 at 626.471 kb on + strand, within ABIE40_RS29645 at 626.471 kb on + strand, within ABIE40_RS29645 at 626.471 kb on + strand, within ABIE40_RS29645 at 626.472 kb on - strand, within ABIE40_RS29645 at 626.472 kb on - strand, within ABIE40_RS29645 at 626.472 kb on - strand, within ABIE40_RS29645 at 626.473 kb on + strand, within ABIE40_RS29645 at 626.473 kb on + strand, within ABIE40_RS29645 at 626.475 kb on + strand, within ABIE40_RS29645 at 626.475 kb on + strand, within ABIE40_RS29645 at 626.475 kb on + strand, within ABIE40_RS29645 at 626.476 kb on - strand, within ABIE40_RS29645 at 626.476 kb on - strand, within ABIE40_RS29645 at 626.476 kb on - strand, within ABIE40_RS29645 at 626.551 kb on + strand, within ABIE40_RS29645 at 626.552 kb on - strand, within ABIE40_RS29645 at 626.552 kb on - strand, within ABIE40_RS29645 at 626.736 kb on + strand, within ABIE40_RS29645 at 626.736 kb on + strand, within ABIE40_RS29645 at 626.818 kb on + strand, within ABIE40_RS29645 at 626.978 kb on - strand at 626.984 kb on + strand at 626.985 kb on - strand at 627.036 kb on + strand at 627.419 kb on - strand, within ABIE40_RS29650 at 627.419 kb on - strand, within ABIE40_RS29650 at 627.584 kb on - strand, within ABIE40_RS29650 at 627.675 kb on - strand, within ABIE40_RS29650 at 627.692 kb on + strand, within ABIE40_RS29650 at 627.693 kb on - strand, within ABIE40_RS29650 at 627.693 kb on - strand, within ABIE40_RS29650 at 627.734 kb on + strand at 627.734 kb on + strand at 627.735 kb on - strand at 627.794 kb on + strand at 627.794 kb on + strand at 627.865 kb on - strand at 628.009 kb on + strand at 628.009 kb on + strand at 628.009 kb on + strand at 628.010 kb on - strand at 628.096 kb on + strand at 628.096 kb on + strand at 628.097 kb on - strand at 628.097 kb on - strand at 628.097 kb on - strand at 628.195 kb on + strand at 628.196 kb on - strand at 628.252 kb on + strand at 628.252 kb on + strand at 628.281 kb on + strand at 628.281 kb on + strand at 628.281 kb on + strand at 628.281 kb on + strand at 628.281 kb on + strand at 628.302 kb on - strand at 628.311 kb on + strand at 628.311 kb on + strand at 628.311 kb on + strand at 628.311 kb on + strand at 628.312 kb on - strand at 628.343 kb on - strand at 628.343 kb on - strand at 628.554 kb on + strand, within ABIE40_RS29655 at 628.620 kb on + strand, within ABIE40_RS29655 at 628.621 kb on - strand, within ABIE40_RS29655 at 628.754 kb on + strand at 628.787 kb on + strand at 628.787 kb on + strand at 628.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 626,048 + -0.6 626,049 - +0.7 626,049 - +1.4 626,049 - +1.2 626,049 - -0.0 626,049 - +2.2 626,049 - +0.4 626,169 + -1.7 626,169 + -0.1 626,170 - -0.4 626,172 + -0.0 626,172 + -0.8 626,173 - -0.2 626,184 + +0.7 626,184 + -0.6 626,185 - -0.6 626,185 - +0.7 626,185 - +1.3 626,185 - -2.2 626,185 - -0.4 626,192 + -0.7 626,192 + -3.4 626,255 + -1.6 626,255 + -0.6 626,256 - -2.3 626,260 + +0.3 626,261 - -1.1 626,384 + ABIE40_RS29645 0.26 -1.0 626,384 + ABIE40_RS29645 0.26 +0.2 626,471 + ABIE40_RS29645 0.37 -0.3 626,471 + ABIE40_RS29645 0.37 +1.7 626,471 + ABIE40_RS29645 0.37 +0.2 626,472 - ABIE40_RS29645 0.37 +0.2 626,472 - ABIE40_RS29645 0.37 -0.2 626,472 - ABIE40_RS29645 0.37 -0.3 626,473 + ABIE40_RS29645 0.37 +0.2 626,473 + ABIE40_RS29645 0.37 +0.6 626,475 + ABIE40_RS29645 0.37 -1.0 626,475 + ABIE40_RS29645 0.37 -0.6 626,475 + ABIE40_RS29645 0.37 -0.6 626,476 - ABIE40_RS29645 0.38 -0.3 626,476 - ABIE40_RS29645 0.38 -0.7 626,476 - ABIE40_RS29645 0.38 +0.5 626,551 + ABIE40_RS29645 0.47 +0.3 626,552 - ABIE40_RS29645 0.47 -0.1 626,552 - ABIE40_RS29645 0.47 +1.0 626,736 + ABIE40_RS29645 0.71 +4.1 626,736 + ABIE40_RS29645 0.71 -0.7 626,818 + ABIE40_RS29645 0.82 +0.3 626,978 - -1.9 626,984 + +0.4 626,985 - +0.8 627,036 + -1.2 627,419 - ABIE40_RS29650 0.53 -2.8 627,419 - ABIE40_RS29650 0.53 +0.6 627,584 - ABIE40_RS29650 0.74 +1.8 627,675 - ABIE40_RS29650 0.86 -1.9 627,692 + ABIE40_RS29650 0.88 +1.8 627,693 - ABIE40_RS29650 0.88 -1.6 627,693 - ABIE40_RS29650 0.88 -0.8 627,734 + +0.1 627,734 + +0.1 627,735 - +0.3 627,794 + -0.6 627,794 + -0.7 627,865 - +0.0 628,009 + +0.0 628,009 + -0.4 628,009 + -0.4 628,010 - +1.8 628,096 + -0.2 628,096 + +0.2 628,097 - -0.0 628,097 - -0.5 628,097 - -1.0 628,195 + -0.2 628,196 - +0.1 628,252 + -0.2 628,252 + -0.4 628,281 + -0.5 628,281 + -0.2 628,281 + -2.6 628,281 + +0.3 628,281 + +0.8 628,302 - -0.6 628,311 + -0.1 628,311 + +1.1 628,311 + -1.4 628,311 + -1.3 628,312 - +0.4 628,343 - -0.6 628,343 - +0.3 628,554 + ABIE40_RS29655 0.51 +0.7 628,620 + ABIE40_RS29655 0.67 +0.2 628,621 - ABIE40_RS29655 0.67 -0.9 628,754 + -0.8 628,787 + -0.7 628,787 + -0.2 628,787 + +1.8
Or see this region's nucleotide sequence