Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27190 and ABIE40_RS27195 are separated by 97 nucleotides ABIE40_RS27195 and ABIE40_RS27200 are separated by 349 nucleotides ABIE40_RS27200 and ABIE40_RS27205 are separated by 205 nucleotides
ABIE40_RS27190: ABIE40_RS27190 - Rrf2 family transcriptional regulator, at 156,697 to 157,143
_RS27190
ABIE40_RS27195: ABIE40_RS27195 - response regulator, at 157,241 to 157,624
_RS27195
ABIE40_RS27200: ABIE40_RS27200 - helix-turn-helix transcriptional regulator, at 157,974 to 158,339
_RS27200
ABIE40_RS27205: ABIE40_RS27205 - IS110 family transposase, at 158,545 to 159,429
_RS27205
Position (kb) 157
158 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 156.269 kb on - strand at 156.341 kb on + strand at 156.341 kb on + strand at 156.346 kb on + strand at 156.346 kb on + strand at 156.346 kb on + strand at 156.346 kb on + strand at 156.347 kb on - strand at 156.347 kb on - strand at 156.395 kb on - strand at 156.418 kb on + strand at 156.418 kb on + strand at 156.418 kb on + strand at 156.418 kb on + strand at 156.419 kb on - strand at 156.421 kb on - strand at 156.477 kb on - strand at 156.477 kb on - strand at 156.498 kb on + strand at 156.545 kb on - strand at 156.551 kb on + strand at 156.565 kb on - strand at 156.576 kb on - strand at 156.601 kb on - strand at 156.656 kb on + strand at 156.657 kb on - strand at 156.814 kb on - strand, within ABIE40_RS27190 at 156.814 kb on - strand, within ABIE40_RS27190 at 156.842 kb on + strand, within ABIE40_RS27190 at 156.924 kb on + strand, within ABIE40_RS27190 at 156.934 kb on + strand, within ABIE40_RS27190 at 157.008 kb on + strand, within ABIE40_RS27190 at 157.009 kb on - strand, within ABIE40_RS27190 at 157.009 kb on - strand, within ABIE40_RS27190 at 157.009 kb on - strand, within ABIE40_RS27190 at 157.009 kb on - strand, within ABIE40_RS27190 at 157.011 kb on + strand, within ABIE40_RS27190 at 157.079 kb on + strand, within ABIE40_RS27190 at 157.080 kb on - strand, within ABIE40_RS27190 at 157.080 kb on - strand, within ABIE40_RS27190 at 157.115 kb on + strand at 157.223 kb on - strand at 157.251 kb on - strand at 157.251 kb on - strand at 157.251 kb on - strand at 157.261 kb on + strand at 157.400 kb on + strand, within ABIE40_RS27195 at 157.401 kb on - strand, within ABIE40_RS27195 at 157.405 kb on + strand, within ABIE40_RS27195 at 157.421 kb on + strand, within ABIE40_RS27195 at 157.569 kb on - strand, within ABIE40_RS27195 at 157.569 kb on - strand, within ABIE40_RS27195 at 157.712 kb on + strand at 157.712 kb on + strand at 157.713 kb on - strand at 157.720 kb on - strand at 157.746 kb on + strand at 157.747 kb on - strand at 157.796 kb on - strand at 157.975 kb on + strand at 157.975 kb on + strand at 157.976 kb on - strand at 157.985 kb on + strand at 157.985 kb on + strand at 157.986 kb on - strand at 158.047 kb on - strand, within ABIE40_RS27200 at 158.079 kb on + strand, within ABIE40_RS27200 at 158.079 kb on + strand, within ABIE40_RS27200 at 158.079 kb on + strand, within ABIE40_RS27200 at 158.080 kb on - strand, within ABIE40_RS27200 at 158.097 kb on + strand, within ABIE40_RS27200 at 158.116 kb on + strand, within ABIE40_RS27200 at 158.116 kb on + strand, within ABIE40_RS27200 at 158.192 kb on - strand, within ABIE40_RS27200 at 158.214 kb on + strand, within ABIE40_RS27200 at 158.214 kb on + strand, within ABIE40_RS27200 at 158.215 kb on - strand, within ABIE40_RS27200 at 158.215 kb on - strand, within ABIE40_RS27200 at 158.357 kb on - strand at 158.358 kb on + strand at 158.358 kb on + strand at 158.358 kb on + strand at 158.358 kb on + strand at 158.358 kb on + strand at 158.358 kb on + strand at 158.358 kb on + strand at 158.359 kb on - strand at 158.359 kb on - strand at 158.359 kb on - strand at 158.359 kb on - strand at 158.359 kb on - strand at 158.359 kb on - strand at 158.370 kb on - strand at 158.373 kb on + strand at 158.374 kb on - strand at 158.436 kb on + strand at 158.439 kb on + strand at 158.439 kb on + strand at 158.511 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 156,269 - -0.9 156,341 + +2.9 156,341 + +0.4 156,346 + +0.2 156,346 + +0.2 156,346 + +0.5 156,346 + -1.3 156,347 - +0.2 156,347 - +0.9 156,395 - -2.3 156,418 + -1.1 156,418 + +1.9 156,418 + -0.7 156,418 + +3.5 156,419 - +0.6 156,421 - -1.1 156,477 - -0.4 156,477 - +0.9 156,498 + +0.5 156,545 - +0.3 156,551 + -1.6 156,565 - +0.9 156,576 - -0.1 156,601 - +1.3 156,656 + -2.6 156,657 - -1.6 156,814 - ABIE40_RS27190 0.26 -0.7 156,814 - ABIE40_RS27190 0.26 -0.7 156,842 + ABIE40_RS27190 0.32 +1.3 156,924 + ABIE40_RS27190 0.51 -0.2 156,934 + ABIE40_RS27190 0.53 +1.9 157,008 + ABIE40_RS27190 0.70 -0.6 157,009 - ABIE40_RS27190 0.70 +0.7 157,009 - ABIE40_RS27190 0.70 -1.6 157,009 - ABIE40_RS27190 0.70 +0.6 157,009 - ABIE40_RS27190 0.70 +1.9 157,011 + ABIE40_RS27190 0.70 +0.1 157,079 + ABIE40_RS27190 0.85 +1.3 157,080 - ABIE40_RS27190 0.86 -1.3 157,080 - ABIE40_RS27190 0.86 +2.9 157,115 + -1.0 157,223 - -0.5 157,251 - +0.3 157,251 - -1.4 157,251 - -0.1 157,261 + +0.9 157,400 + ABIE40_RS27195 0.41 +0.9 157,401 - ABIE40_RS27195 0.42 -0.9 157,405 + ABIE40_RS27195 0.43 -1.6 157,421 + ABIE40_RS27195 0.47 +0.9 157,569 - ABIE40_RS27195 0.85 +0.7 157,569 - ABIE40_RS27195 0.85 -1.9 157,712 + +1.9 157,712 + -1.8 157,713 - +0.5 157,720 - +2.9 157,746 + -0.1 157,747 - +1.9 157,796 - +0.3 157,975 + +1.9 157,975 + +0.2 157,976 - -0.3 157,985 + +1.0 157,985 + +0.1 157,986 - +1.9 158,047 - ABIE40_RS27200 0.20 +1.9 158,079 + ABIE40_RS27200 0.29 -1.1 158,079 + ABIE40_RS27200 0.29 -0.1 158,079 + ABIE40_RS27200 0.29 -2.4 158,080 - ABIE40_RS27200 0.29 -2.3 158,097 + ABIE40_RS27200 0.34 +1.9 158,116 + ABIE40_RS27200 0.39 -0.1 158,116 + ABIE40_RS27200 0.39 -0.1 158,192 - ABIE40_RS27200 0.60 +1.3 158,214 + ABIE40_RS27200 0.66 -1.1 158,214 + ABIE40_RS27200 0.66 +1.9 158,215 - ABIE40_RS27200 0.66 +1.9 158,215 - ABIE40_RS27200 0.66 +0.3 158,357 - -0.4 158,358 + +1.5 158,358 + +1.1 158,358 + +0.2 158,358 + -0.2 158,358 + -0.8 158,358 + +1.9 158,358 + +1.9 158,359 - +1.9 158,359 - -0.3 158,359 - -1.7 158,359 - -1.2 158,359 - -0.1 158,359 - +0.7 158,370 - +1.9 158,373 + -0.5 158,374 - +0.8 158,436 + +0.1 158,439 + -0.2 158,439 + +1.1 158,511 + -0.2
Or see this region's nucleotide sequence