Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22720 and ABIE40_RS22725 are separated by 39 nucleotides ABIE40_RS22725 and ABIE40_RS22730 overlap by 4 nucleotides ABIE40_RS22730 and ABIE40_RS22735 are separated by 53 nucleotides
ABIE40_RS22720: ABIE40_RS22720 - aldo/keto reductase, at 692,414 to 694,417
_RS22720
ABIE40_RS22725: ABIE40_RS22725 - anti-sigma factor, at 694,457 to 695,236
_RS22725
ABIE40_RS22730: ABIE40_RS22730 - RNA polymerase sigma factor, at 695,233 to 695,760
_RS22730
ABIE40_RS22735: ABIE40_RS22735 - YncE family protein, at 695,814 to 697,268
_RS22735
Position (kb) 694
695
696 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 693.611 kb on + strand, within ABIE40_RS22720 at 693.611 kb on + strand, within ABIE40_RS22720 at 693.651 kb on - strand, within ABIE40_RS22720 at 693.766 kb on + strand, within ABIE40_RS22720 at 693.766 kb on + strand, within ABIE40_RS22720 at 693.767 kb on - strand, within ABIE40_RS22720 at 693.767 kb on - strand, within ABIE40_RS22720 at 693.767 kb on - strand, within ABIE40_RS22720 at 693.815 kb on + strand, within ABIE40_RS22720 at 693.816 kb on - strand, within ABIE40_RS22720 at 693.824 kb on - strand, within ABIE40_RS22720 at 693.827 kb on + strand, within ABIE40_RS22720 at 693.827 kb on + strand, within ABIE40_RS22720 at 693.827 kb on + strand, within ABIE40_RS22720 at 693.828 kb on - strand, within ABIE40_RS22720 at 693.828 kb on - strand, within ABIE40_RS22720 at 693.828 kb on - strand, within ABIE40_RS22720 at 693.828 kb on - strand, within ABIE40_RS22720 at 693.847 kb on + strand, within ABIE40_RS22720 at 693.847 kb on + strand, within ABIE40_RS22720 at 693.848 kb on - strand, within ABIE40_RS22720 at 693.968 kb on + strand, within ABIE40_RS22720 at 693.969 kb on - strand, within ABIE40_RS22720 at 694.096 kb on + strand, within ABIE40_RS22720 at 694.097 kb on - strand, within ABIE40_RS22720 at 694.289 kb on + strand at 694.289 kb on + strand at 694.289 kb on + strand at 694.289 kb on + strand at 694.290 kb on - strand at 694.290 kb on - strand at 694.290 kb on - strand at 694.290 kb on - strand at 694.418 kb on + strand at 694.418 kb on + strand at 694.418 kb on + strand at 694.419 kb on - strand at 694.419 kb on - strand at 694.419 kb on - strand at 694.419 kb on - strand at 694.419 kb on - strand at 694.419 kb on - strand at 694.419 kb on - strand at 694.419 kb on - strand at 694.419 kb on - strand at 694.419 kb on - strand at 694.459 kb on - strand at 694.538 kb on - strand, within ABIE40_RS22725 at 694.540 kb on - strand, within ABIE40_RS22725 at 694.640 kb on - strand, within ABIE40_RS22725 at 694.640 kb on - strand, within ABIE40_RS22725 at 694.669 kb on - strand, within ABIE40_RS22725 at 694.669 kb on - strand, within ABIE40_RS22725 at 694.669 kb on - strand, within ABIE40_RS22725 at 694.669 kb on - strand, within ABIE40_RS22725 at 694.669 kb on - strand, within ABIE40_RS22725 at 694.669 kb on - strand, within ABIE40_RS22725 at 694.669 kb on - strand, within ABIE40_RS22725 at 694.707 kb on - strand, within ABIE40_RS22725 at 694.707 kb on - strand, within ABIE40_RS22725 at 694.707 kb on - strand, within ABIE40_RS22725 at 694.707 kb on - strand, within ABIE40_RS22725 at 694.707 kb on - strand, within ABIE40_RS22725 at 694.770 kb on - strand, within ABIE40_RS22725 at 694.799 kb on - strand, within ABIE40_RS22725 at 694.799 kb on - strand, within ABIE40_RS22725 at 694.858 kb on - strand, within ABIE40_RS22725 at 695.024 kb on - strand, within ABIE40_RS22725 at 695.107 kb on - strand, within ABIE40_RS22725 at 695.149 kb on - strand, within ABIE40_RS22725 at 695.149 kb on - strand, within ABIE40_RS22725 at 695.149 kb on - strand, within ABIE40_RS22725 at 695.197 kb on - strand at 695.197 kb on - strand at 695.197 kb on - strand at 695.271 kb on + strand at 695.271 kb on + strand at 695.271 kb on + strand at 695.272 kb on - strand at 695.272 kb on - strand at 695.272 kb on - strand at 695.272 kb on - strand at 695.272 kb on - strand at 695.272 kb on - strand at 695.293 kb on + strand, within ABIE40_RS22730 at 695.294 kb on - strand, within ABIE40_RS22730 at 695.378 kb on + strand, within ABIE40_RS22730 at 695.379 kb on - strand, within ABIE40_RS22730 at 695.379 kb on - strand, within ABIE40_RS22730 at 695.465 kb on + strand, within ABIE40_RS22730 at 695.465 kb on + strand, within ABIE40_RS22730 at 695.465 kb on + strand, within ABIE40_RS22730 at 695.465 kb on + strand, within ABIE40_RS22730 at 695.465 kb on + strand, within ABIE40_RS22730 at 695.466 kb on - strand, within ABIE40_RS22730 at 695.523 kb on + strand, within ABIE40_RS22730 at 695.524 kb on - strand, within ABIE40_RS22730 at 695.751 kb on + strand at 695.752 kb on - strand at 695.752 kb on - strand at 695.752 kb on - strand at 695.874 kb on + strand at 695.875 kb on - strand at 695.875 kb on - strand at 695.875 kb on - strand at 695.875 kb on - strand at 695.878 kb on + strand at 695.879 kb on - strand at 695.879 kb on - strand at 696.026 kb on + strand, within ABIE40_RS22735 at 696.026 kb on + strand, within ABIE40_RS22735 at 696.028 kb on + strand, within ABIE40_RS22735 at 696.028 kb on + strand, within ABIE40_RS22735 at 696.028 kb on + strand, within ABIE40_RS22735 at 696.028 kb on + strand, within ABIE40_RS22735 at 696.028 kb on + strand, within ABIE40_RS22735 at 696.028 kb on + strand, within ABIE40_RS22735 at 696.029 kb on - strand, within ABIE40_RS22735 at 696.029 kb on - strand, within ABIE40_RS22735 at 696.029 kb on - strand, within ABIE40_RS22735 at 696.029 kb on - strand, within ABIE40_RS22735 at 696.179 kb on + strand, within ABIE40_RS22735 at 696.179 kb on + strand, within ABIE40_RS22735 at 696.179 kb on + strand, within ABIE40_RS22735 at 696.179 kb on + strand, within ABIE40_RS22735 at 696.180 kb on - strand, within ABIE40_RS22735 at 696.180 kb on - strand, within ABIE40_RS22735 at 696.223 kb on + strand, within ABIE40_RS22735 at 696.223 kb on + strand, within ABIE40_RS22735 at 696.223 kb on + strand, within ABIE40_RS22735 at 696.224 kb on - strand, within ABIE40_RS22735 at 696.224 kb on - strand, within ABIE40_RS22735
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 693,611 + ABIE40_RS22720 0.60 +0.7 693,611 + ABIE40_RS22720 0.60 +0.1 693,651 - ABIE40_RS22720 0.62 -0.1 693,766 + ABIE40_RS22720 0.67 -0.4 693,766 + ABIE40_RS22720 0.67 +0.9 693,767 - ABIE40_RS22720 0.68 -1.1 693,767 - ABIE40_RS22720 0.68 +1.1 693,767 - ABIE40_RS22720 0.68 -0.2 693,815 + ABIE40_RS22720 0.70 -0.2 693,816 - ABIE40_RS22720 0.70 -0.0 693,824 - ABIE40_RS22720 0.70 -0.1 693,827 + ABIE40_RS22720 0.71 -0.2 693,827 + ABIE40_RS22720 0.71 -1.3 693,827 + ABIE40_RS22720 0.71 +0.7 693,828 - ABIE40_RS22720 0.71 -0.3 693,828 - ABIE40_RS22720 0.71 -0.3 693,828 - ABIE40_RS22720 0.71 -0.2 693,828 - ABIE40_RS22720 0.71 +0.2 693,847 + ABIE40_RS22720 0.72 +1.9 693,847 + ABIE40_RS22720 0.72 -1.6 693,848 - ABIE40_RS22720 0.72 -1.0 693,968 + ABIE40_RS22720 0.78 +0.7 693,969 - ABIE40_RS22720 0.78 +1.9 694,096 + ABIE40_RS22720 0.84 -0.0 694,097 - ABIE40_RS22720 0.84 -0.1 694,289 + +0.5 694,289 + -0.7 694,289 + -0.1 694,289 + -0.2 694,290 - +2.3 694,290 - +0.1 694,290 - -0.4 694,290 - +3.1 694,418 + +0.8 694,418 + -0.1 694,418 + -0.2 694,419 - +1.5 694,419 - +0.3 694,419 - +0.3 694,419 - +0.5 694,419 - -2.2 694,419 - -1.3 694,419 - +0.2 694,419 - -2.4 694,419 - +1.9 694,419 - -0.1 694,459 - -0.0 694,538 - ABIE40_RS22725 0.10 -1.5 694,540 - ABIE40_RS22725 0.11 -1.9 694,640 - ABIE40_RS22725 0.23 -0.5 694,640 - ABIE40_RS22725 0.23 -0.3 694,669 - ABIE40_RS22725 0.27 -2.1 694,669 - ABIE40_RS22725 0.27 +2.3 694,669 - ABIE40_RS22725 0.27 +0.9 694,669 - ABIE40_RS22725 0.27 -1.3 694,669 - ABIE40_RS22725 0.27 -1.5 694,669 - ABIE40_RS22725 0.27 -1.4 694,669 - ABIE40_RS22725 0.27 -2.5 694,707 - ABIE40_RS22725 0.32 -0.4 694,707 - ABIE40_RS22725 0.32 -1.3 694,707 - ABIE40_RS22725 0.32 -0.8 694,707 - ABIE40_RS22725 0.32 -1.8 694,707 - ABIE40_RS22725 0.32 -1.7 694,770 - ABIE40_RS22725 0.40 -2.3 694,799 - ABIE40_RS22725 0.44 -1.4 694,799 - ABIE40_RS22725 0.44 +0.3 694,858 - ABIE40_RS22725 0.51 -0.7 695,024 - ABIE40_RS22725 0.73 -0.0 695,107 - ABIE40_RS22725 0.83 -0.3 695,149 - ABIE40_RS22725 0.89 -0.4 695,149 - ABIE40_RS22725 0.89 -0.3 695,149 - ABIE40_RS22725 0.89 -1.3 695,197 - -0.9 695,197 - -1.1 695,197 - -0.7 695,271 + -1.5 695,271 + -1.5 695,271 + -0.1 695,272 - +0.0 695,272 - +0.7 695,272 - -0.3 695,272 - +4.5 695,272 - +0.4 695,272 - +1.2 695,293 + ABIE40_RS22730 0.11 +1.1 695,294 - ABIE40_RS22730 0.12 +0.2 695,378 + ABIE40_RS22730 0.27 -0.2 695,379 - ABIE40_RS22730 0.28 +0.1 695,379 - ABIE40_RS22730 0.28 +1.1 695,465 + ABIE40_RS22730 0.44 -1.0 695,465 + ABIE40_RS22730 0.44 -0.5 695,465 + ABIE40_RS22730 0.44 -0.7 695,465 + ABIE40_RS22730 0.44 -0.1 695,465 + ABIE40_RS22730 0.44 +0.0 695,466 - ABIE40_RS22730 0.44 -0.2 695,523 + ABIE40_RS22730 0.55 -2.6 695,524 - ABIE40_RS22730 0.55 +0.8 695,751 + +1.6 695,752 - -1.0 695,752 - +0.3 695,752 - -1.0 695,874 + -0.3 695,875 - +0.3 695,875 - +0.3 695,875 - -0.3 695,875 - +0.2 695,878 + -0.4 695,879 - +1.5 695,879 - +0.3 696,026 + ABIE40_RS22735 0.15 -1.2 696,026 + ABIE40_RS22735 0.15 -0.7 696,028 + ABIE40_RS22735 0.15 -1.7 696,028 + ABIE40_RS22735 0.15 +1.3 696,028 + ABIE40_RS22735 0.15 +0.7 696,028 + ABIE40_RS22735 0.15 -0.4 696,028 + ABIE40_RS22735 0.15 -1.5 696,028 + ABIE40_RS22735 0.15 -0.7 696,029 - ABIE40_RS22735 0.15 +1.7 696,029 - ABIE40_RS22735 0.15 -0.2 696,029 - ABIE40_RS22735 0.15 -0.1 696,029 - ABIE40_RS22735 0.15 +0.4 696,179 + ABIE40_RS22735 0.25 +0.9 696,179 + ABIE40_RS22735 0.25 -0.5 696,179 + ABIE40_RS22735 0.25 -1.4 696,179 + ABIE40_RS22735 0.25 -0.2 696,180 - ABIE40_RS22735 0.25 +0.3 696,180 - ABIE40_RS22735 0.25 +0.7 696,223 + ABIE40_RS22735 0.28 +0.1 696,223 + ABIE40_RS22735 0.28 -1.2 696,223 + ABIE40_RS22735 0.28 +0.9 696,224 - ABIE40_RS22735 0.28 -0.4 696,224 - ABIE40_RS22735 0.28 +1.5
Or see this region's nucleotide sequence