Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21105 and ABIE40_RS21110 are separated by 241 nucleotides ABIE40_RS21110 and ABIE40_RS21115 are separated by 15 nucleotides
ABIE40_RS21105: ABIE40_RS21105 - glutamine synthetase family protein, at 335,072 to 336,571
_RS21105
ABIE40_RS21110: ABIE40_RS21110 - helix-turn-helix domain-containing protein, at 336,813 to 337,349
_RS21110
ABIE40_RS21115: ABIE40_RS21115 - HlyD family secretion protein, at 337,365 to 338,453
_RS21115
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 335.956 kb on + strand, within ABIE40_RS21105 at 335.956 kb on + strand, within ABIE40_RS21105 at 335.956 kb on + strand, within ABIE40_RS21105 at 335.956 kb on + strand, within ABIE40_RS21105 at 335.956 kb on + strand, within ABIE40_RS21105 at 335.956 kb on + strand, within ABIE40_RS21105 at 335.956 kb on + strand, within ABIE40_RS21105 at 335.957 kb on - strand, within ABIE40_RS21105 at 335.957 kb on - strand, within ABIE40_RS21105 at 335.957 kb on - strand, within ABIE40_RS21105 at 335.958 kb on + strand, within ABIE40_RS21105 at 335.958 kb on + strand, within ABIE40_RS21105 at 335.958 kb on + strand, within ABIE40_RS21105 at 335.958 kb on + strand, within ABIE40_RS21105 at 335.958 kb on + strand, within ABIE40_RS21105 at 335.959 kb on - strand, within ABIE40_RS21105 at 335.959 kb on - strand, within ABIE40_RS21105 at 336.022 kb on + strand, within ABIE40_RS21105 at 336.023 kb on - strand, within ABIE40_RS21105 at 336.023 kb on - strand, within ABIE40_RS21105 at 336.063 kb on + strand, within ABIE40_RS21105 at 336.063 kb on + strand, within ABIE40_RS21105 at 336.063 kb on + strand, within ABIE40_RS21105 at 336.064 kb on - strand, within ABIE40_RS21105 at 336.064 kb on - strand, within ABIE40_RS21105 at 336.316 kb on - strand, within ABIE40_RS21105 at 336.316 kb on - strand, within ABIE40_RS21105 at 336.542 kb on - strand at 336.554 kb on + strand at 336.571 kb on + strand at 336.572 kb on - strand at 336.572 kb on - strand at 336.572 kb on - strand at 336.595 kb on + strand at 336.595 kb on + strand at 336.595 kb on + strand at 336.595 kb on + strand at 336.595 kb on + strand at 336.595 kb on + strand at 336.595 kb on + strand at 336.595 kb on + strand at 336.595 kb on + strand at 336.596 kb on - strand at 336.596 kb on - strand at 336.596 kb on - strand at 336.596 kb on - strand at 336.596 kb on - strand at 336.821 kb on + strand at 336.822 kb on - strand at 336.822 kb on - strand at 337.023 kb on + strand, within ABIE40_RS21110 at 337.023 kb on + strand, within ABIE40_RS21110 at 337.024 kb on - strand, within ABIE40_RS21110 at 337.024 kb on - strand, within ABIE40_RS21110 at 337.024 kb on - strand, within ABIE40_RS21110 at 337.050 kb on + strand, within ABIE40_RS21110 at 337.051 kb on - strand, within ABIE40_RS21110 at 337.230 kb on + strand, within ABIE40_RS21110 at 337.231 kb on - strand, within ABIE40_RS21110 at 337.231 kb on - strand, within ABIE40_RS21110 at 337.231 kb on - strand, within ABIE40_RS21110 at 337.347 kb on + strand at 337.347 kb on + strand at 337.347 kb on + strand at 337.347 kb on + strand at 337.347 kb on + strand at 337.348 kb on - strand at 337.348 kb on - strand at 337.348 kb on - strand at 337.348 kb on - strand at 337.348 kb on - strand at 337.370 kb on + strand at 337.370 kb on + strand at 337.370 kb on + strand at 337.370 kb on + strand at 337.371 kb on - strand at 337.371 kb on - strand at 337.371 kb on - strand at 337.371 kb on - strand at 337.371 kb on - strand at 337.371 kb on - strand at 337.494 kb on + strand, within ABIE40_RS21115 at 337.494 kb on + strand, within ABIE40_RS21115 at 337.499 kb on - strand, within ABIE40_RS21115 at 337.542 kb on + strand, within ABIE40_RS21115 at 337.542 kb on + strand, within ABIE40_RS21115 at 337.543 kb on - strand, within ABIE40_RS21115 at 337.543 kb on - strand, within ABIE40_RS21115 at 337.543 kb on - strand, within ABIE40_RS21115 at 337.543 kb on - strand, within ABIE40_RS21115 at 337.543 kb on - strand, within ABIE40_RS21115 at 337.545 kb on - strand, within ABIE40_RS21115 at 337.553 kb on + strand, within ABIE40_RS21115 at 337.554 kb on - strand, within ABIE40_RS21115 at 337.556 kb on + strand, within ABIE40_RS21115 at 337.557 kb on - strand, within ABIE40_RS21115 at 337.834 kb on - strand, within ABIE40_RS21115 at 338.049 kb on + strand, within ABIE40_RS21115 at 338.049 kb on + strand, within ABIE40_RS21115 at 338.050 kb on - strand, within ABIE40_RS21115 at 338.051 kb on + strand, within ABIE40_RS21115 at 338.130 kb on + strand, within ABIE40_RS21115 at 338.131 kb on - strand, within ABIE40_RS21115 at 338.131 kb on - strand, within ABIE40_RS21115 at 338.131 kb on - strand, within ABIE40_RS21115 at 338.131 kb on - strand, within ABIE40_RS21115 at 338.241 kb on + strand, within ABIE40_RS21115 at 338.241 kb on + strand, within ABIE40_RS21115 at 338.241 kb on + strand, within ABIE40_RS21115 at 338.242 kb on - strand, within ABIE40_RS21115 at 338.242 kb on - strand, within ABIE40_RS21115 at 338.242 kb on - strand, within ABIE40_RS21115 at 338.242 kb on - strand, within ABIE40_RS21115 at 338.242 kb on - strand, within ABIE40_RS21115 at 338.242 kb on - strand, within ABIE40_RS21115 at 338.242 kb on - strand, within ABIE40_RS21115 at 338.298 kb on - strand, within ABIE40_RS21115 at 338.298 kb on - strand, within ABIE40_RS21115
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 335,956 + ABIE40_RS21105 0.59 +0.1 335,956 + ABIE40_RS21105 0.59 +0.2 335,956 + ABIE40_RS21105 0.59 +0.2 335,956 + ABIE40_RS21105 0.59 -1.3 335,956 + ABIE40_RS21105 0.59 +0.4 335,956 + ABIE40_RS21105 0.59 -1.3 335,956 + ABIE40_RS21105 0.59 -0.3 335,957 - ABIE40_RS21105 0.59 +1.2 335,957 - ABIE40_RS21105 0.59 -0.1 335,957 - ABIE40_RS21105 0.59 -0.1 335,958 + ABIE40_RS21105 0.59 +0.8 335,958 + ABIE40_RS21105 0.59 -0.2 335,958 + ABIE40_RS21105 0.59 +1.8 335,958 + ABIE40_RS21105 0.59 -0.1 335,958 + ABIE40_RS21105 0.59 -1.5 335,959 - ABIE40_RS21105 0.59 +1.0 335,959 - ABIE40_RS21105 0.59 +0.5 336,022 + ABIE40_RS21105 0.63 +0.4 336,023 - ABIE40_RS21105 0.63 +1.1 336,023 - ABIE40_RS21105 0.63 +0.8 336,063 + ABIE40_RS21105 0.66 -0.4 336,063 + ABIE40_RS21105 0.66 +0.3 336,063 + ABIE40_RS21105 0.66 -0.2 336,064 - ABIE40_RS21105 0.66 -1.5 336,064 - ABIE40_RS21105 0.66 -0.2 336,316 - ABIE40_RS21105 0.83 +0.4 336,316 - ABIE40_RS21105 0.83 -0.8 336,542 - -0.8 336,554 + +0.3 336,571 + +0.1 336,572 - +0.8 336,572 - +0.8 336,572 - -0.8 336,595 + -0.4 336,595 + +2.8 336,595 + -0.4 336,595 + +0.0 336,595 + +0.5 336,595 + +1.1 336,595 + -0.6 336,595 + +0.6 336,595 + -0.5 336,596 - +1.5 336,596 - -0.5 336,596 - +0.2 336,596 - +0.3 336,596 - -0.5 336,821 + -0.2 336,822 - +0.2 336,822 - -2.0 337,023 + ABIE40_RS21110 0.39 -1.0 337,023 + ABIE40_RS21110 0.39 -0.5 337,024 - ABIE40_RS21110 0.39 +0.2 337,024 - ABIE40_RS21110 0.39 -0.7 337,024 - ABIE40_RS21110 0.39 -1.3 337,050 + ABIE40_RS21110 0.44 +1.8 337,051 - ABIE40_RS21110 0.44 -0.5 337,230 + ABIE40_RS21110 0.78 +0.2 337,231 - ABIE40_RS21110 0.78 -0.9 337,231 - ABIE40_RS21110 0.78 -1.2 337,231 - ABIE40_RS21110 0.78 -0.7 337,347 + -0.9 337,347 + -1.2 337,347 + -0.2 337,347 + +1.1 337,347 + -0.9 337,348 - -0.9 337,348 - -0.3 337,348 - -0.5 337,348 - +1.0 337,348 - -0.0 337,370 + -0.8 337,370 + +0.9 337,370 + +0.2 337,370 + +1.8 337,371 - -0.5 337,371 - +0.6 337,371 - +1.4 337,371 - +0.2 337,371 - +0.2 337,371 - -0.3 337,494 + ABIE40_RS21115 0.12 -0.3 337,494 + ABIE40_RS21115 0.12 +1.5 337,499 - ABIE40_RS21115 0.12 +0.2 337,542 + ABIE40_RS21115 0.16 +0.5 337,542 + ABIE40_RS21115 0.16 +0.1 337,543 - ABIE40_RS21115 0.16 +1.3 337,543 - ABIE40_RS21115 0.16 +0.3 337,543 - ABIE40_RS21115 0.16 +0.2 337,543 - ABIE40_RS21115 0.16 +1.8 337,543 - ABIE40_RS21115 0.16 -1.8 337,545 - ABIE40_RS21115 0.17 -1.1 337,553 + ABIE40_RS21115 0.17 -0.8 337,554 - ABIE40_RS21115 0.17 -0.4 337,556 + ABIE40_RS21115 0.18 -0.2 337,557 - ABIE40_RS21115 0.18 +4.2 337,834 - ABIE40_RS21115 0.43 -0.2 338,049 + ABIE40_RS21115 0.63 +1.1 338,049 + ABIE40_RS21115 0.63 -0.3 338,050 - ABIE40_RS21115 0.63 +0.8 338,051 + ABIE40_RS21115 0.63 +0.5 338,130 + ABIE40_RS21115 0.70 -1.5 338,131 - ABIE40_RS21115 0.70 -0.3 338,131 - ABIE40_RS21115 0.70 +1.0 338,131 - ABIE40_RS21115 0.70 -0.6 338,131 - ABIE40_RS21115 0.70 +0.0 338,241 + ABIE40_RS21115 0.80 -0.9 338,241 + ABIE40_RS21115 0.80 -0.3 338,241 + ABIE40_RS21115 0.80 -2.6 338,242 - ABIE40_RS21115 0.81 +0.2 338,242 - ABIE40_RS21115 0.81 +0.4 338,242 - ABIE40_RS21115 0.81 +0.5 338,242 - ABIE40_RS21115 0.81 +1.7 338,242 - ABIE40_RS21115 0.81 -0.2 338,242 - ABIE40_RS21115 0.81 +0.8 338,242 - ABIE40_RS21115 0.81 +0.2 338,298 - ABIE40_RS21115 0.86 +0.2 338,298 - ABIE40_RS21115 0.86 +2.2
Or see this region's nucleotide sequence