Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21025

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21020 and ABIE40_RS21025 are separated by 112 nucleotidesABIE40_RS21025 and ABIE40_RS21030 are separated by 40 nucleotides ABIE40_RS21020: ABIE40_RS21020 - LysR family transcriptional regulator, at 315,126 to 316,052 _RS21020 ABIE40_RS21025: ABIE40_RS21025 - VOC family protein, at 316,165 to 317,556 _RS21025 ABIE40_RS21030: ABIE40_RS21030 - aldehyde dehydrogenase family protein, at 317,597 to 319,129 _RS21030 Position (kb) 316 317 318Strain fitness (log2 ratio) -2 -1 0 1 2 3at 315.226 kb on + strand, within ABIE40_RS21020at 315.226 kb on + strand, within ABIE40_RS21020at 315.244 kb on + strand, within ABIE40_RS21020at 315.244 kb on + strand, within ABIE40_RS21020at 315.244 kb on + strand, within ABIE40_RS21020at 315.244 kb on + strand, within ABIE40_RS21020at 315.244 kb on + strand, within ABIE40_RS21020at 315.244 kb on + strand, within ABIE40_RS21020at 315.244 kb on + strand, within ABIE40_RS21020at 315.244 kb on + strand, within ABIE40_RS21020at 315.244 kb on + strand, within ABIE40_RS21020at 315.244 kb on + strand, within ABIE40_RS21020at 315.245 kb on - strand, within ABIE40_RS21020at 315.245 kb on - strand, within ABIE40_RS21020at 315.245 kb on - strand, within ABIE40_RS21020at 315.245 kb on - strand, within ABIE40_RS21020at 315.245 kb on - strand, within ABIE40_RS21020at 315.245 kb on - strand, within ABIE40_RS21020at 315.245 kb on - strand, within ABIE40_RS21020at 315.245 kb on - strand, within ABIE40_RS21020at 315.245 kb on - strand, within ABIE40_RS21020at 315.247 kb on + strand, within ABIE40_RS21020at 315.247 kb on + strand, within ABIE40_RS21020at 315.248 kb on - strand, within ABIE40_RS21020at 315.248 kb on - strand, within ABIE40_RS21020at 315.322 kb on + strand, within ABIE40_RS21020at 315.323 kb on - strand, within ABIE40_RS21020at 315.882 kb on + strand, within ABIE40_RS21020at 316.077 kb on - strandat 316.082 kb on + strandat 316.102 kb on + strandat 316.104 kb on + strandat 316.104 kb on + strandat 316.104 kb on + strandat 316.104 kb on + strandat 316.104 kb on + strandat 316.104 kb on + strandat 316.104 kb on + strandat 316.105 kb on - strandat 316.105 kb on - strandat 316.105 kb on - strandat 316.115 kb on + strandat 316.117 kb on + strandat 316.141 kb on + strandat 316.228 kb on + strandat 316.228 kb on + strandat 316.438 kb on + strand, within ABIE40_RS21025at 316.438 kb on + strand, within ABIE40_RS21025at 316.438 kb on + strand, within ABIE40_RS21025at 316.439 kb on - strand, within ABIE40_RS21025at 316.453 kb on + strand, within ABIE40_RS21025at 316.453 kb on + strand, within ABIE40_RS21025at 316.453 kb on + strand, within ABIE40_RS21025at 316.753 kb on + strand, within ABIE40_RS21025at 316.765 kb on + strand, within ABIE40_RS21025at 316.766 kb on - strand, within ABIE40_RS21025at 316.888 kb on + strand, within ABIE40_RS21025at 316.888 kb on + strand, within ABIE40_RS21025at 316.888 kb on + strand, within ABIE40_RS21025at 316.888 kb on + strand, within ABIE40_RS21025at 316.888 kb on + strand, within ABIE40_RS21025at 317.028 kb on + strand, within ABIE40_RS21025at 317.028 kb on + strand, within ABIE40_RS21025at 317.236 kb on + strand, within ABIE40_RS21025at 317.485 kb on + strandat 317.485 kb on + strandat 317.554 kb on + strandat 317.554 kb on + strandat 317.679 kb on - strandat 317.963 kb on + strand, within ABIE40_RS21030at 317.963 kb on + strand, within ABIE40_RS21030at 317.964 kb on - strand, within ABIE40_RS21030at 317.990 kb on + strand, within ABIE40_RS21030at 318.379 kb on + strand, within ABIE40_RS21030at 318.379 kb on + strand, within ABIE40_RS21030at 318.379 kb on + strand, within ABIE40_RS21030

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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315,226 + ABIE40_RS21020 0.11 +2.0
315,226 + ABIE40_RS21020 0.11 +1.5
315,244 + ABIE40_RS21020 0.13 -0.0
315,244 + ABIE40_RS21020 0.13 +0.2
315,244 + ABIE40_RS21020 0.13 -1.0
315,244 + ABIE40_RS21020 0.13 +1.1
315,244 + ABIE40_RS21020 0.13 -1.2
315,244 + ABIE40_RS21020 0.13 -0.3
315,244 + ABIE40_RS21020 0.13 -0.0
315,244 + ABIE40_RS21020 0.13 -0.3
315,244 + ABIE40_RS21020 0.13 -0.9
315,244 + ABIE40_RS21020 0.13 +0.4
315,245 - ABIE40_RS21020 0.13 +0.0
315,245 - ABIE40_RS21020 0.13 +1.8
315,245 - ABIE40_RS21020 0.13 -0.5
315,245 - ABIE40_RS21020 0.13 +0.6
315,245 - ABIE40_RS21020 0.13 +0.3
315,245 - ABIE40_RS21020 0.13 +2.8
315,245 - ABIE40_RS21020 0.13 -0.6
315,245 - ABIE40_RS21020 0.13 +2.0
315,245 - ABIE40_RS21020 0.13 +0.7
315,247 + ABIE40_RS21020 0.13 +1.0
315,247 + ABIE40_RS21020 0.13 +0.7
315,248 - ABIE40_RS21020 0.13 -0.5
315,248 - ABIE40_RS21020 0.13 -1.5
315,322 + ABIE40_RS21020 0.21 +0.1
315,323 - ABIE40_RS21020 0.21 -0.4
315,882 + ABIE40_RS21020 0.82 +0.7
316,077 - -2.2
316,082 + -1.8
316,102 + +0.2
316,104 + +0.8
316,104 + -2.3
316,104 + +1.6
316,104 + -0.6
316,104 + +0.3
316,104 + -1.2
316,104 + -1.8
316,105 - -0.5
316,105 - -0.2
316,105 - +1.8
316,115 + +0.3
316,117 + -0.2
316,141 + -0.1
316,228 + -0.1
316,228 + -1.9
316,438 + ABIE40_RS21025 0.20 -2.5
316,438 + ABIE40_RS21025 0.20 -1.8
316,438 + ABIE40_RS21025 0.20 -1.3
316,439 - ABIE40_RS21025 0.20 -1.0
316,453 + ABIE40_RS21025 0.21 -0.5
316,453 + ABIE40_RS21025 0.21 -1.9
316,453 + ABIE40_RS21025 0.21 +2.4
316,753 + ABIE40_RS21025 0.42 -0.8
316,765 + ABIE40_RS21025 0.43 -1.9
316,766 - ABIE40_RS21025 0.43 +1.8
316,888 + ABIE40_RS21025 0.52 -1.3
316,888 + ABIE40_RS21025 0.52 -0.2
316,888 + ABIE40_RS21025 0.52 -0.8
316,888 + ABIE40_RS21025 0.52 -1.0
316,888 + ABIE40_RS21025 0.52 -1.0
317,028 + ABIE40_RS21025 0.62 -0.2
317,028 + ABIE40_RS21025 0.62 -2.0
317,236 + ABIE40_RS21025 0.77 -0.6
317,485 + -0.5
317,485 + -2.1
317,554 + +0.8
317,554 + -0.6
317,679 - -1.1
317,963 + ABIE40_RS21030 0.24 -0.6
317,963 + ABIE40_RS21030 0.24 -0.4
317,964 - ABIE40_RS21030 0.24 -0.5
317,990 + ABIE40_RS21030 0.26 +0.8
318,379 + ABIE40_RS21030 0.51 -0.0
318,379 + ABIE40_RS21030 0.51 -0.3
318,379 + ABIE40_RS21030 0.51 -0.5

Or see this region's nucleotide sequence