Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS17575

Experiment: R2A no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A no stress control
3,510,340	+				+2.8
3,510,340	+				-0.1
3,510,340	+				-1.8
3,510,340	+				+0.5
3,510,340	+				-1.6
3,510,341	-				-0.4
3,510,341	-				-0.5
3,510,341	-				+0.2
3,510,413	+				-0.5
3,510,450	+				-0.0
3,510,450	+				+0.2
3,510,451	-				-1.5
3,510,452	+				-0.4
3,510,452	+				-2.2
3,510,452	+				+0.2
3,510,452	+				+1.0
3,510,452	+				+0.4
3,510,452	+				+0.7
3,510,452	+				+0.1
3,510,452	+				+1.0
3,510,452	+				+0.8
3,510,452	+				-0.2
3,510,453	-				-1.3
3,510,453	-				-0.2
3,510,453	-				-0.8
3,510,453	-				+0.2
3,510,453	-				+1.1
3,510,453	-				-2.1
3,510,453	-				+0.5
3,510,453	-				-0.2
3,510,476	+				-3.1
3,510,476	+				+1.0
3,510,476	+				-2.3
3,510,476	+				+0.5
3,510,476	+				+0.2
3,510,476	+				+0.2
3,510,477	-				-1.8
3,510,478	+				-0.5
3,510,493	+				-2.1
3,510,847	+		ABIE40_RS17570	0.53	-0.2
3,510,917	+		ABIE40_RS17570	0.63	-1.6
3,510,919	+		ABIE40_RS17570	0.63	-1.2
3,510,919	+		ABIE40_RS17570	0.63	+0.2
3,510,947	+		ABIE40_RS17570	0.67	-0.3
3,510,947	+		ABIE40_RS17570	0.67	-1.0
3,510,948	-		ABIE40_RS17570	0.68	-0.7
3,510,948	-		ABIE40_RS17570	0.68	-1.2
3,510,980	+		ABIE40_RS17570	0.72	+1.8
3,510,980	+		ABIE40_RS17570	0.72	-1.4
3,510,981	-		ABIE40_RS17570	0.72	-1.1
3,510,981	-		ABIE40_RS17570	0.72	-0.8
3,510,981	-		ABIE40_RS17570	0.72	-1.2
3,510,981	-		ABIE40_RS17570	0.72	-0.4
3,510,981	-		ABIE40_RS17570	0.72	+0.8
3,511,088	+		ABIE40_RS17570	0.87	-0.2
3,511,089	-		ABIE40_RS17570	0.87	-1.9
3,511,089	-		ABIE40_RS17570	0.87	-1.5
3,511,120	+				+0.8
3,511,120	+				-0.7
3,511,196	+				+0.7
3,511,197	-				-0.5
3,511,208	-				-0.6
3,511,215	+				+0.3
3,511,215	+				+1.8
3,511,216	-				-1.2
3,511,216	-				-2.3
3,511,216	-				+2.8
3,511,245	+				-0.3
3,511,247	+				+0.6
3,511,248	-				-2.3
3,511,248	-				-0.8
3,511,248	-				+1.8
3,511,266	+				-0.2
3,511,266	+				-0.6
3,511,266	+				+1.1
3,511,345	+				+1.0
3,511,348	+		ABIE40_RS17575	0.10	-1.2
3,511,348	+		ABIE40_RS17575	0.10	+0.8
3,511,349	-		ABIE40_RS17575	0.10	-1.0
3,511,480	+		ABIE40_RS17575	0.27	+1.8
3,511,480	+		ABIE40_RS17575	0.27	-0.2
3,511,480	+		ABIE40_RS17575	0.27	-0.4
3,511,480	+		ABIE40_RS17575	0.27	+0.2
3,511,481	-		ABIE40_RS17575	0.27	-0.1
3,511,481	-		ABIE40_RS17575	0.27	-1.8
3,511,481	-		ABIE40_RS17575	0.27	-0.5
3,511,482	+		ABIE40_RS17575	0.27	-1.9
3,511,483	-		ABIE40_RS17575	0.27	+2.8
3,511,519	+		ABIE40_RS17575	0.32	+2.2
3,511,519	+		ABIE40_RS17575	0.32	-0.5
3,511,519	+		ABIE40_RS17575	0.32	-1.3
3,511,519	+		ABIE40_RS17575	0.32	+3.4
3,511,520	-		ABIE40_RS17575	0.32	-1.7
3,511,552	+		ABIE40_RS17575	0.36	+0.8
3,511,552	+		ABIE40_RS17575	0.36	-0.2
3,511,553	-		ABIE40_RS17575	0.36	-1.7
3,511,554	+		ABIE40_RS17575	0.36	-0.2
3,511,555	-		ABIE40_RS17575	0.36	-1.5
3,511,597	+		ABIE40_RS17575	0.41	-1.2
3,511,597	+		ABIE40_RS17575	0.41	-0.8
3,511,597	+		ABIE40_RS17575	0.41	-1.0
3,511,598	-		ABIE40_RS17575	0.41	-2.4
3,511,598	-		ABIE40_RS17575	0.41	+1.5
3,511,602	+		ABIE40_RS17575	0.42	-0.5
3,511,603	-		ABIE40_RS17575	0.42	-0.8
3,511,712	-		ABIE40_RS17575	0.56	-0.2
3,511,712	-		ABIE40_RS17575	0.56	-1.7
3,511,722	+		ABIE40_RS17575	0.57	-2.4
3,511,723	-		ABIE40_RS17575	0.57	+0.5
3,511,753	+		ABIE40_RS17575	0.61	-0.5
3,511,753	+		ABIE40_RS17575	0.61	+0.5
3,511,760	-		ABIE40_RS17575	0.62	+0.2
3,511,855	+		ABIE40_RS17575	0.74	+0.2
3,511,868	+		ABIE40_RS17575	0.75	-0.8
3,511,936	+		ABIE40_RS17575	0.84	-1.5
3,512,062	+				-0.5
3,512,063	-				-1.6
3,512,067	+				+0.0
3,512,152	+		ABIE40_RS17580	0.17	-0.3
3,512,152	+		ABIE40_RS17580	0.17	-0.2
3,512,152	+		ABIE40_RS17580	0.17	+1.1
3,512,153	-		ABIE40_RS17580	0.18	-0.1
3,512,153	-		ABIE40_RS17580	0.18	-1.0
3,512,153	-		ABIE40_RS17580	0.18	-0.1
3,512,163	+		ABIE40_RS17580	0.20	+0.6
3,512,163	+		ABIE40_RS17580	0.20	-0.6
3,512,163	+		ABIE40_RS17580	0.20	+0.7
3,512,163	+		ABIE40_RS17580	0.20	-0.2
3,512,163	+		ABIE40_RS17580	0.20	-1.5
3,512,163	+		ABIE40_RS17580	0.20	-1.0
3,512,164	-		ABIE40_RS17580	0.20	+1.0
3,512,164	-		ABIE40_RS17580	0.20	-0.4
3,512,164	-		ABIE40_RS17580	0.20	+0.1
3,512,164	-		ABIE40_RS17580	0.20	+0.3
3,512,164	-		ABIE40_RS17580	0.20	+0.1
3,512,241	+		ABIE40_RS17580	0.35	+1.4
3,512,242	-		ABIE40_RS17580	0.36	+0.1
3,512,242	-		ABIE40_RS17580	0.36	+1.0
3,512,249	-		ABIE40_RS17580	0.37	-0.2
3,512,249	-		ABIE40_RS17580	0.37	-0.1
3,512,268	+		ABIE40_RS17580	0.41	-0.6
3,512,268	+		ABIE40_RS17580	0.41	-0.3
3,512,268	+		ABIE40_RS17580	0.41	+2.1
3,512,268	+		ABIE40_RS17580	0.41	-0.6
3,512,269	-		ABIE40_RS17580	0.41	-1.3
3,512,269	-		ABIE40_RS17580	0.41	+1.8
3,512,269	-		ABIE40_RS17580	0.41	+0.7
3,512,269	-		ABIE40_RS17580	0.41	-0.2
3,512,269	-		ABIE40_RS17580	0.41	+0.1
3,512,269	-		ABIE40_RS17580	0.41	+0.3
3,512,269	-		ABIE40_RS17580	0.41	+0.2
3,512,269	-		ABIE40_RS17580	0.41	-0.4
3,512,269	-		ABIE40_RS17580	0.41	-1.4
3,512,328	+		ABIE40_RS17580	0.53	-1.4
3,512,328	+		ABIE40_RS17580	0.53	+1.8
3,512,328	+		ABIE40_RS17580	0.53	-0.1
3,512,329	-		ABIE40_RS17580	0.53	+0.4
3,512,329	-		ABIE40_RS17580	0.53	-0.4
3,512,329	-		ABIE40_RS17580	0.53	+0.1
3,512,362	-		ABIE40_RS17580	0.60	+1.8
3,512,506	-		ABIE40_RS17580	0.89	-0.0
3,512,506	-		ABIE40_RS17580	0.89	+0.7
3,512,511	+				-2.1
3,512,511	+				-1.1
3,512,512	-				-2.0
3,512,512	-				+0.3
3,512,512	-				+0.2
3,512,596	+				-0.5
3,512,597	-				-1.3
3,512,597	-				-0.7
3,512,726	+				+1.8
3,512,727	-				-1.2
3,512,727	-				+1.1
3,512,727	-				+1.8
3,512,728	+				-1.2
3,512,744	+				+1.8
3,512,745	-				+0.8
3,512,945	+		ABIE40_RS17585	0.30	-0.2
3,512,946	-		ABIE40_RS17585	0.30	+0.2
3,512,946	-		ABIE40_RS17585	0.30	+1.8
3,512,946	-		ABIE40_RS17585	0.30	+0.8
3,512,959	+		ABIE40_RS17585	0.31	-1.2