Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02945 and ABIE40_RS02950 are separated by 6 nucleotides ABIE40_RS02950 and ABIE40_RS02955 are separated by 248 nucleotides
ABIE40_RS02945: ABIE40_RS02945 - FliM/FliN family flagellar motor switch protein, at 582,407 to 583,348
_RS02945
ABIE40_RS02950: ABIE40_RS02950 - flagellar motor stator protein MotA, at 583,355 to 584,227
_RS02950
ABIE40_RS02955: ABIE40_RS02955 - flagellar basal-body rod protein FlgF, at 584,476 to 585,210
_RS02955
Position (kb) 583
584
585 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 582.416 kb on + strand at 582.416 kb on + strand at 582.451 kb on + strand at 582.451 kb on + strand at 582.451 kb on + strand at 582.452 kb on - strand at 582.452 kb on - strand at 582.471 kb on + strand at 582.471 kb on + strand at 582.471 kb on + strand at 582.472 kb on - strand at 582.472 kb on - strand at 582.504 kb on + strand, within ABIE40_RS02945 at 582.504 kb on + strand, within ABIE40_RS02945 at 582.504 kb on + strand, within ABIE40_RS02945 at 582.504 kb on + strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 582.505 kb on - strand, within ABIE40_RS02945 at 583.072 kb on + strand, within ABIE40_RS02945 at 583.171 kb on - strand, within ABIE40_RS02945 at 583.231 kb on - strand, within ABIE40_RS02945 at 583.267 kb on + strand at 583.267 kb on + strand at 583.267 kb on + strand at 583.268 kb on - strand at 583.268 kb on - strand at 583.268 kb on - strand at 583.331 kb on + strand at 583.332 kb on - strand at 583.357 kb on - strand at 583.357 kb on - strand at 583.426 kb on - strand at 583.449 kb on + strand, within ABIE40_RS02950 at 583.485 kb on + strand, within ABIE40_RS02950 at 583.486 kb on - strand, within ABIE40_RS02950 at 583.515 kb on + strand, within ABIE40_RS02950 at 583.515 kb on + strand, within ABIE40_RS02950 at 583.515 kb on + strand, within ABIE40_RS02950 at 583.515 kb on + strand, within ABIE40_RS02950 at 583.515 kb on + strand, within ABIE40_RS02950 at 583.516 kb on - strand, within ABIE40_RS02950 at 583.516 kb on - strand, within ABIE40_RS02950 at 583.516 kb on - strand, within ABIE40_RS02950 at 583.516 kb on - strand, within ABIE40_RS02950 at 583.578 kb on + strand, within ABIE40_RS02950 at 583.578 kb on + strand, within ABIE40_RS02950 at 583.579 kb on - strand, within ABIE40_RS02950 at 583.579 kb on - strand, within ABIE40_RS02950 at 583.591 kb on + strand, within ABIE40_RS02950 at 583.675 kb on + strand, within ABIE40_RS02950 at 583.842 kb on + strand, within ABIE40_RS02950 at 583.842 kb on + strand, within ABIE40_RS02950 at 583.842 kb on + strand, within ABIE40_RS02950 at 583.842 kb on + strand, within ABIE40_RS02950 at 583.843 kb on - strand, within ABIE40_RS02950 at 583.980 kb on + strand, within ABIE40_RS02950 at 583.981 kb on - strand, within ABIE40_RS02950 at 584.144 kb on + strand at 584.144 kb on + strand at 584.144 kb on + strand at 584.145 kb on - strand at 584.145 kb on - strand at 584.145 kb on - strand at 584.200 kb on + strand at 584.221 kb on + strand at 584.221 kb on + strand at 584.221 kb on + strand at 584.221 kb on + strand at 584.222 kb on - strand at 584.222 kb on - strand at 584.222 kb on - strand at 584.249 kb on - strand at 584.267 kb on - strand at 584.470 kb on - strand at 584.491 kb on + strand at 584.491 kb on + strand at 584.492 kb on - strand at 584.492 kb on - strand at 584.492 kb on - strand at 584.492 kb on - strand at 584.616 kb on + strand, within ABIE40_RS02955 at 584.668 kb on + strand, within ABIE40_RS02955 at 584.668 kb on + strand, within ABIE40_RS02955 at 584.668 kb on + strand, within ABIE40_RS02955 at 584.668 kb on + strand, within ABIE40_RS02955 at 584.668 kb on + strand, within ABIE40_RS02955 at 584.669 kb on - strand, within ABIE40_RS02955 at 584.669 kb on - strand, within ABIE40_RS02955 at 584.669 kb on - strand, within ABIE40_RS02955 at 584.669 kb on - strand, within ABIE40_RS02955 at 584.669 kb on - strand, within ABIE40_RS02955 at 584.806 kb on - strand, within ABIE40_RS02955 at 584.913 kb on + strand, within ABIE40_RS02955 at 584.913 kb on + strand, within ABIE40_RS02955 at 584.913 kb on + strand, within ABIE40_RS02955 at 584.913 kb on + strand, within ABIE40_RS02955 at 584.913 kb on + strand, within ABIE40_RS02955 at 584.913 kb on + strand, within ABIE40_RS02955 at 584.913 kb on + strand, within ABIE40_RS02955 at 584.914 kb on - strand, within ABIE40_RS02955 at 584.914 kb on - strand, within ABIE40_RS02955 at 584.914 kb on - strand, within ABIE40_RS02955 at 584.914 kb on - strand, within ABIE40_RS02955 at 584.914 kb on - strand, within ABIE40_RS02955 at 584.914 kb on - strand, within ABIE40_RS02955 at 584.914 kb on - strand, within ABIE40_RS02955 at 584.914 kb on - strand, within ABIE40_RS02955 at 584.914 kb on - strand, within ABIE40_RS02955 at 584.917 kb on + strand, within ABIE40_RS02955 at 584.917 kb on + strand, within ABIE40_RS02955 at 584.918 kb on - strand, within ABIE40_RS02955 at 584.918 kb on - strand, within ABIE40_RS02955 at 584.969 kb on - strand, within ABIE40_RS02955 at 584.978 kb on - strand, within ABIE40_RS02955 at 584.978 kb on - strand, within ABIE40_RS02955 at 585.046 kb on - strand, within ABIE40_RS02955 at 585.064 kb on + strand, within ABIE40_RS02955 at 585.065 kb on - strand, within ABIE40_RS02955
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 582,416 + +0.0 582,416 + -0.3 582,451 + -1.2 582,451 + -1.2 582,451 + +1.9 582,452 - -0.8 582,452 - +3.5 582,471 + -1.2 582,471 + +0.1 582,471 + -0.6 582,472 - -0.4 582,472 - -1.0 582,504 + ABIE40_RS02945 0.10 +0.3 582,504 + ABIE40_RS02945 0.10 -0.4 582,504 + ABIE40_RS02945 0.10 -1.1 582,504 + ABIE40_RS02945 0.10 -0.6 582,505 - ABIE40_RS02945 0.10 -3.5 582,505 - ABIE40_RS02945 0.10 -0.3 582,505 - ABIE40_RS02945 0.10 -0.4 582,505 - ABIE40_RS02945 0.10 -0.7 582,505 - ABIE40_RS02945 0.10 -0.9 582,505 - ABIE40_RS02945 0.10 -0.2 582,505 - ABIE40_RS02945 0.10 -0.5 582,505 - ABIE40_RS02945 0.10 -0.5 582,505 - ABIE40_RS02945 0.10 +0.4 582,505 - ABIE40_RS02945 0.10 -1.2 582,505 - ABIE40_RS02945 0.10 -0.9 582,505 - ABIE40_RS02945 0.10 -0.1 583,072 + ABIE40_RS02945 0.71 -1.2 583,171 - ABIE40_RS02945 0.81 -0.5 583,231 - ABIE40_RS02945 0.87 -0.9 583,267 + -0.2 583,267 + +1.6 583,267 + -0.3 583,268 - -1.2 583,268 - +0.2 583,268 - -0.1 583,331 + +0.1 583,332 - +0.7 583,357 - -1.7 583,357 - -0.1 583,426 - -0.6 583,449 + ABIE40_RS02950 0.11 -0.2 583,485 + ABIE40_RS02950 0.15 -2.2 583,486 - ABIE40_RS02950 0.15 -1.1 583,515 + ABIE40_RS02950 0.18 -1.2 583,515 + ABIE40_RS02950 0.18 -1.1 583,515 + ABIE40_RS02950 0.18 -0.8 583,515 + ABIE40_RS02950 0.18 -0.9 583,515 + ABIE40_RS02950 0.18 +0.2 583,516 - ABIE40_RS02950 0.18 +0.9 583,516 - ABIE40_RS02950 0.18 -2.7 583,516 - ABIE40_RS02950 0.18 +1.0 583,516 - ABIE40_RS02950 0.18 -1.0 583,578 + ABIE40_RS02950 0.26 +0.4 583,578 + ABIE40_RS02950 0.26 -0.5 583,579 - ABIE40_RS02950 0.26 +0.1 583,579 - ABIE40_RS02950 0.26 -0.7 583,591 + ABIE40_RS02950 0.27 -0.5 583,675 + ABIE40_RS02950 0.37 -0.5 583,842 + ABIE40_RS02950 0.56 -1.2 583,842 + ABIE40_RS02950 0.56 -1.1 583,842 + ABIE40_RS02950 0.56 +1.1 583,842 + ABIE40_RS02950 0.56 -0.9 583,843 - ABIE40_RS02950 0.56 -0.5 583,980 + ABIE40_RS02950 0.72 -0.5 583,981 - ABIE40_RS02950 0.72 +1.3 584,144 + -0.7 584,144 + -1.1 584,144 + +1.9 584,145 - +0.1 584,145 - -0.5 584,145 - -1.5 584,200 + -1.6 584,221 + +1.2 584,221 + +0.6 584,221 + +0.9 584,221 + -0.3 584,222 - -0.0 584,222 - +3.1 584,222 - -1.0 584,249 - -0.1 584,267 - +1.1 584,470 - -2.0 584,491 + -1.3 584,491 + -0.6 584,492 - -0.7 584,492 - +0.9 584,492 - -1.3 584,492 - -1.3 584,616 + ABIE40_RS02955 0.19 -0.4 584,668 + ABIE40_RS02955 0.26 -0.2 584,668 + ABIE40_RS02955 0.26 -0.3 584,668 + ABIE40_RS02955 0.26 -0.5 584,668 + ABIE40_RS02955 0.26 +0.6 584,668 + ABIE40_RS02955 0.26 +0.4 584,669 - ABIE40_RS02955 0.26 -1.7 584,669 - ABIE40_RS02955 0.26 +0.9 584,669 - ABIE40_RS02955 0.26 -0.3 584,669 - ABIE40_RS02955 0.26 +1.5 584,669 - ABIE40_RS02955 0.26 -1.8 584,806 - ABIE40_RS02955 0.45 +0.9 584,913 + ABIE40_RS02955 0.59 +1.2 584,913 + ABIE40_RS02955 0.59 -0.5 584,913 + ABIE40_RS02955 0.59 -1.5 584,913 + ABIE40_RS02955 0.59 -0.3 584,913 + ABIE40_RS02955 0.59 -1.2 584,913 + ABIE40_RS02955 0.59 +0.3 584,913 + ABIE40_RS02955 0.59 +2.5 584,914 - ABIE40_RS02955 0.60 -0.8 584,914 - ABIE40_RS02955 0.60 +0.3 584,914 - ABIE40_RS02955 0.60 -0.7 584,914 - ABIE40_RS02955 0.60 -0.1 584,914 - ABIE40_RS02955 0.60 -1.3 584,914 - ABIE40_RS02955 0.60 -0.7 584,914 - ABIE40_RS02955 0.60 -0.3 584,914 - ABIE40_RS02955 0.60 -0.1 584,914 - ABIE40_RS02955 0.60 -2.7 584,917 + ABIE40_RS02955 0.60 -0.1 584,917 + ABIE40_RS02955 0.60 -1.5 584,918 - ABIE40_RS02955 0.60 +2.9 584,918 - ABIE40_RS02955 0.60 -0.1 584,969 - ABIE40_RS02955 0.67 +0.9 584,978 - ABIE40_RS02955 0.68 -0.5 584,978 - ABIE40_RS02955 0.68 -0.6 585,046 - ABIE40_RS02955 0.78 -0.6 585,064 + ABIE40_RS02955 0.80 -0.8 585,065 - ABIE40_RS02955 0.80 -0.3
Or see this region's nucleotide sequence