Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01200 and ABIE40_RS01205 are separated by 68 nucleotides ABIE40_RS01205 and ABIE40_RS01210 are separated by 9 nucleotides ABIE40_RS01210 and ABIE40_RS01215 are separated by 10 nucleotides
ABIE40_RS01200: ABIE40_RS01200 - hypothetical protein, at 237,254 to 239,074
_RS01200
ABIE40_RS01205: ABIE40_RS01205 - exodeoxyribonuclease VII large subunit, at 239,143 to 240,729
_RS01205
ABIE40_RS01210: ABIE40_RS01210 - NAD(P)H-dependent oxidoreductase, at 240,739 to 241,329
_RS01210
ABIE40_RS01215: ABIE40_RS01215 - aminopeptidase, at 241,340 to 242,590
_RS01215
Position (kb) 239
240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 238.168 kb on - strand, within ABIE40_RS01200 at 238.288 kb on + strand, within ABIE40_RS01200 at 238.289 kb on - strand, within ABIE40_RS01200 at 238.318 kb on + strand, within ABIE40_RS01200 at 238.319 kb on - strand, within ABIE40_RS01200 at 238.319 kb on - strand, within ABIE40_RS01200 at 238.319 kb on - strand, within ABIE40_RS01200 at 238.319 kb on - strand, within ABIE40_RS01200 at 238.334 kb on + strand, within ABIE40_RS01200 at 238.334 kb on + strand, within ABIE40_RS01200 at 238.334 kb on + strand, within ABIE40_RS01200 at 238.334 kb on + strand, within ABIE40_RS01200 at 238.335 kb on - strand, within ABIE40_RS01200 at 238.335 kb on - strand, within ABIE40_RS01200 at 238.375 kb on + strand, within ABIE40_RS01200 at 238.376 kb on - strand, within ABIE40_RS01200 at 238.376 kb on - strand, within ABIE40_RS01200 at 238.376 kb on - strand, within ABIE40_RS01200 at 238.411 kb on + strand, within ABIE40_RS01200 at 238.411 kb on + strand, within ABIE40_RS01200 at 238.411 kb on + strand, within ABIE40_RS01200 at 238.411 kb on + strand, within ABIE40_RS01200 at 238.412 kb on - strand, within ABIE40_RS01200 at 238.413 kb on + strand, within ABIE40_RS01200 at 238.413 kb on + strand, within ABIE40_RS01200 at 238.413 kb on + strand, within ABIE40_RS01200 at 238.413 kb on + strand, within ABIE40_RS01200 at 238.413 kb on + strand, within ABIE40_RS01200 at 238.413 kb on + strand, within ABIE40_RS01200 at 238.414 kb on - strand, within ABIE40_RS01200 at 238.414 kb on - strand, within ABIE40_RS01200 at 238.414 kb on - strand, within ABIE40_RS01200 at 238.414 kb on - strand, within ABIE40_RS01200 at 238.481 kb on - strand, within ABIE40_RS01200 at 238.481 kb on - strand, within ABIE40_RS01200 at 238.481 kb on - strand, within ABIE40_RS01200 at 238.481 kb on - strand, within ABIE40_RS01200 at 238.507 kb on + strand, within ABIE40_RS01200 at 238.508 kb on - strand, within ABIE40_RS01200 at 238.508 kb on - strand, within ABIE40_RS01200 at 238.571 kb on + strand, within ABIE40_RS01200 at 238.571 kb on + strand, within ABIE40_RS01200 at 238.571 kb on + strand, within ABIE40_RS01200 at 238.571 kb on + strand, within ABIE40_RS01200 at 238.571 kb on + strand, within ABIE40_RS01200 at 238.571 kb on + strand, within ABIE40_RS01200 at 238.571 kb on + strand, within ABIE40_RS01200 at 238.571 kb on + strand, within ABIE40_RS01200 at 238.571 kb on + strand, within ABIE40_RS01200 at 238.571 kb on + strand, within ABIE40_RS01200 at 238.571 kb on + strand, within ABIE40_RS01200 at 238.572 kb on - strand, within ABIE40_RS01200 at 238.572 kb on - strand, within ABIE40_RS01200 at 238.572 kb on - strand, within ABIE40_RS01200 at 238.572 kb on - strand, within ABIE40_RS01200 at 238.573 kb on + strand, within ABIE40_RS01200 at 238.573 kb on + strand, within ABIE40_RS01200 at 238.573 kb on + strand, within ABIE40_RS01200 at 238.573 kb on + strand, within ABIE40_RS01200 at 238.573 kb on + strand, within ABIE40_RS01200 at 238.573 kb on + strand, within ABIE40_RS01200 at 238.573 kb on + strand, within ABIE40_RS01200 at 238.573 kb on + strand, within ABIE40_RS01200 at 238.574 kb on - strand, within ABIE40_RS01200 at 238.574 kb on - strand, within ABIE40_RS01200 at 238.581 kb on + strand, within ABIE40_RS01200 at 238.581 kb on + strand, within ABIE40_RS01200 at 238.582 kb on - strand, within ABIE40_RS01200 at 238.596 kb on + strand, within ABIE40_RS01200 at 238.596 kb on + strand, within ABIE40_RS01200 at 238.767 kb on + strand, within ABIE40_RS01200 at 238.767 kb on + strand, within ABIE40_RS01200 at 238.768 kb on - strand, within ABIE40_RS01200 at 238.817 kb on + strand, within ABIE40_RS01200 at 238.818 kb on - strand, within ABIE40_RS01200 at 238.818 kb on - strand, within ABIE40_RS01200 at 238.891 kb on + strand, within ABIE40_RS01200 at 238.892 kb on - strand, within ABIE40_RS01200 at 238.918 kb on - strand at 238.979 kb on + strand at 238.979 kb on + strand at 239.000 kb on - strand at 239.000 kb on - strand at 239.012 kb on + strand at 239.013 kb on - strand at 239.024 kb on + strand at 239.048 kb on + strand at 239.048 kb on + strand at 239.048 kb on + strand at 239.048 kb on + strand at 239.049 kb on - strand at 239.131 kb on + strand at 239.305 kb on + strand, within ABIE40_RS01205 at 239.305 kb on + strand, within ABIE40_RS01205 at 239.306 kb on - strand, within ABIE40_RS01205 at 239.306 kb on - strand, within ABIE40_RS01205 at 239.306 kb on - strand, within ABIE40_RS01205 at 239.334 kb on + strand, within ABIE40_RS01205 at 239.446 kb on + strand, within ABIE40_RS01205 at 239.447 kb on - strand, within ABIE40_RS01205 at 239.575 kb on - strand, within ABIE40_RS01205 at 239.688 kb on - strand, within ABIE40_RS01205 at 239.917 kb on + strand, within ABIE40_RS01205 at 239.918 kb on - strand, within ABIE40_RS01205 at 239.918 kb on - strand, within ABIE40_RS01205 at 240.168 kb on + strand, within ABIE40_RS01205 at 240.168 kb on + strand, within ABIE40_RS01205 at 240.168 kb on + strand, within ABIE40_RS01205 at 240.169 kb on - strand, within ABIE40_RS01205 at 240.169 kb on - strand, within ABIE40_RS01205 at 240.176 kb on + strand, within ABIE40_RS01205 at 240.176 kb on + strand, within ABIE40_RS01205 at 240.177 kb on - strand, within ABIE40_RS01205 at 240.260 kb on + strand, within ABIE40_RS01205 at 240.260 kb on + strand, within ABIE40_RS01205 at 240.261 kb on - strand, within ABIE40_RS01205 at 240.261 kb on - strand, within ABIE40_RS01205 at 240.429 kb on + strand, within ABIE40_RS01205 at 240.430 kb on - strand, within ABIE40_RS01205 at 240.430 kb on - strand, within ABIE40_RS01205 at 240.505 kb on + strand, within ABIE40_RS01205 at 240.505 kb on + strand, within ABIE40_RS01205 at 240.505 kb on + strand, within ABIE40_RS01205 at 240.506 kb on - strand, within ABIE40_RS01205 at 240.727 kb on + strand at 240.727 kb on + strand at 240.728 kb on - strand at 240.834 kb on + strand, within ABIE40_RS01210 at 240.834 kb on + strand, within ABIE40_RS01210 at 240.834 kb on + strand, within ABIE40_RS01210 at 240.834 kb on + strand, within ABIE40_RS01210 at 240.834 kb on + strand, within ABIE40_RS01210 at 240.834 kb on + strand, within ABIE40_RS01210 at 240.835 kb on - strand, within ABIE40_RS01210 at 240.835 kb on - strand, within ABIE40_RS01210 at 240.835 kb on - strand, within ABIE40_RS01210 at 240.835 kb on - strand, within ABIE40_RS01210 at 240.835 kb on - strand, within ABIE40_RS01210 at 240.856 kb on + strand, within ABIE40_RS01210 at 240.856 kb on + strand, within ABIE40_RS01210 at 240.856 kb on + strand, within ABIE40_RS01210 at 240.857 kb on - strand, within ABIE40_RS01210 at 240.888 kb on + strand, within ABIE40_RS01210 at 240.888 kb on + strand, within ABIE40_RS01210 at 240.888 kb on + strand, within ABIE40_RS01210 at 240.889 kb on - strand, within ABIE40_RS01210 at 240.920 kb on - strand, within ABIE40_RS01210 at 240.924 kb on + strand, within ABIE40_RS01210 at 240.924 kb on + strand, within ABIE40_RS01210 at 240.924 kb on + strand, within ABIE40_RS01210 at 240.924 kb on + strand, within ABIE40_RS01210 at 240.924 kb on + strand, within ABIE40_RS01210 at 240.924 kb on + strand, within ABIE40_RS01210 at 240.924 kb on + strand, within ABIE40_RS01210 at 240.924 kb on + strand, within ABIE40_RS01210 at 240.924 kb on + strand, within ABIE40_RS01210 at 240.924 kb on + strand, within ABIE40_RS01210 at 240.925 kb on - strand, within ABIE40_RS01210 at 240.925 kb on - strand, within ABIE40_RS01210 at 240.925 kb on - strand, within ABIE40_RS01210 at 240.925 kb on - strand, within ABIE40_RS01210 at 240.925 kb on - strand, within ABIE40_RS01210 at 240.925 kb on - strand, within ABIE40_RS01210 at 240.925 kb on - strand, within ABIE40_RS01210 at 240.925 kb on - strand, within ABIE40_RS01210 at 241.107 kb on + strand, within ABIE40_RS01210 at 241.165 kb on + strand, within ABIE40_RS01210 at 241.165 kb on + strand, within ABIE40_RS01210 at 241.165 kb on + strand, within ABIE40_RS01210 at 241.165 kb on + strand, within ABIE40_RS01210 at 241.165 kb on + strand, within ABIE40_RS01210 at 241.165 kb on + strand, within ABIE40_RS01210 at 241.165 kb on + strand, within ABIE40_RS01210 at 241.165 kb on + strand, within ABIE40_RS01210 at 241.166 kb on - strand, within ABIE40_RS01210 at 241.166 kb on - strand, within ABIE40_RS01210 at 241.166 kb on - strand, within ABIE40_RS01210 at 241.166 kb on - strand, within ABIE40_RS01210 at 241.166 kb on - strand, within ABIE40_RS01210 at 241.166 kb on - strand, within ABIE40_RS01210 at 241.166 kb on - strand, within ABIE40_RS01210 at 241.258 kb on - strand, within ABIE40_RS01210 at 241.325 kb on + strand at 241.325 kb on + strand at 241.325 kb on + strand at 241.326 kb on - strand at 241.326 kb on - strand at 241.326 kb on - strand at 241.436 kb on - strand at 241.515 kb on + strand, within ABIE40_RS01215 at 241.515 kb on + strand, within ABIE40_RS01215 at 241.516 kb on - strand, within ABIE40_RS01215 at 241.516 kb on - strand, within ABIE40_RS01215 at 241.516 kb on - strand, within ABIE40_RS01215 at 241.569 kb on + strand, within ABIE40_RS01215 at 241.569 kb on + strand, within ABIE40_RS01215 at 241.569 kb on + strand, within ABIE40_RS01215 at 241.570 kb on - strand, within ABIE40_RS01215 at 241.570 kb on - strand, within ABIE40_RS01215 at 241.570 kb on - strand, within ABIE40_RS01215 at 241.570 kb on - strand, within ABIE40_RS01215
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 238,168 - ABIE40_RS01200 0.50 -1.3 238,288 + ABIE40_RS01200 0.57 +0.3 238,289 - ABIE40_RS01200 0.57 +0.2 238,318 + ABIE40_RS01200 0.58 -0.1 238,319 - ABIE40_RS01200 0.58 +0.3 238,319 - ABIE40_RS01200 0.58 -1.7 238,319 - ABIE40_RS01200 0.58 -0.6 238,319 - ABIE40_RS01200 0.58 -0.4 238,334 + ABIE40_RS01200 0.59 -0.1 238,334 + ABIE40_RS01200 0.59 -0.3 238,334 + ABIE40_RS01200 0.59 -0.7 238,334 + ABIE40_RS01200 0.59 -0.5 238,335 - ABIE40_RS01200 0.59 +1.1 238,335 - ABIE40_RS01200 0.59 -0.8 238,375 + ABIE40_RS01200 0.62 +0.0 238,376 - ABIE40_RS01200 0.62 -0.6 238,376 - ABIE40_RS01200 0.62 -1.3 238,376 - ABIE40_RS01200 0.62 +0.5 238,411 + ABIE40_RS01200 0.64 +0.1 238,411 + ABIE40_RS01200 0.64 +2.1 238,411 + ABIE40_RS01200 0.64 -1.6 238,411 + ABIE40_RS01200 0.64 -0.7 238,412 - ABIE40_RS01200 0.64 -0.3 238,413 + ABIE40_RS01200 0.64 -0.2 238,413 + ABIE40_RS01200 0.64 +1.0 238,413 + ABIE40_RS01200 0.64 -0.9 238,413 + ABIE40_RS01200 0.64 -0.3 238,413 + ABIE40_RS01200 0.64 +0.2 238,413 + ABIE40_RS01200 0.64 -0.6 238,414 - ABIE40_RS01200 0.64 +0.1 238,414 - ABIE40_RS01200 0.64 -0.2 238,414 - ABIE40_RS01200 0.64 -0.4 238,414 - ABIE40_RS01200 0.64 -0.3 238,481 - ABIE40_RS01200 0.67 +0.4 238,481 - ABIE40_RS01200 0.67 -0.0 238,481 - ABIE40_RS01200 0.67 -0.1 238,481 - ABIE40_RS01200 0.67 -1.6 238,507 + ABIE40_RS01200 0.69 -1.4 238,508 - ABIE40_RS01200 0.69 +1.0 238,508 - ABIE40_RS01200 0.69 +0.2 238,571 + ABIE40_RS01200 0.72 -0.3 238,571 + ABIE40_RS01200 0.72 -0.1 238,571 + ABIE40_RS01200 0.72 +0.2 238,571 + ABIE40_RS01200 0.72 +0.1 238,571 + ABIE40_RS01200 0.72 +0.5 238,571 + ABIE40_RS01200 0.72 -0.4 238,571 + ABIE40_RS01200 0.72 +0.5 238,571 + ABIE40_RS01200 0.72 +0.5 238,571 + ABIE40_RS01200 0.72 +0.5 238,571 + ABIE40_RS01200 0.72 -1.6 238,571 + ABIE40_RS01200 0.72 +0.2 238,572 - ABIE40_RS01200 0.72 -2.1 238,572 - ABIE40_RS01200 0.72 +0.1 238,572 - ABIE40_RS01200 0.72 -0.0 238,572 - ABIE40_RS01200 0.72 -0.0 238,573 + ABIE40_RS01200 0.72 +0.3 238,573 + ABIE40_RS01200 0.72 -0.7 238,573 + ABIE40_RS01200 0.72 -0.2 238,573 + ABIE40_RS01200 0.72 -0.2 238,573 + ABIE40_RS01200 0.72 -0.3 238,573 + ABIE40_RS01200 0.72 -0.7 238,573 + ABIE40_RS01200 0.72 -0.9 238,573 + ABIE40_RS01200 0.72 -1.8 238,574 - ABIE40_RS01200 0.72 -2.5 238,574 - ABIE40_RS01200 0.72 -0.7 238,581 + ABIE40_RS01200 0.73 -0.1 238,581 + ABIE40_RS01200 0.73 +0.1 238,582 - ABIE40_RS01200 0.73 -2.4 238,596 + ABIE40_RS01200 0.74 -1.3 238,596 + ABIE40_RS01200 0.74 -0.2 238,767 + ABIE40_RS01200 0.83 -0.3 238,767 + ABIE40_RS01200 0.83 +1.2 238,768 - ABIE40_RS01200 0.83 +0.2 238,817 + ABIE40_RS01200 0.86 -0.6 238,818 - ABIE40_RS01200 0.86 -0.4 238,818 - ABIE40_RS01200 0.86 +0.4 238,891 + ABIE40_RS01200 0.90 -0.6 238,892 - ABIE40_RS01200 0.90 +0.0 238,918 - +0.2 238,979 + +1.0 238,979 + -0.9 239,000 - +0.1 239,000 - -0.3 239,012 + -0.1 239,013 - -1.0 239,024 + -1.0 239,048 + -0.4 239,048 + +0.2 239,048 + +1.0 239,048 + +1.1 239,049 - +1.0 239,131 + +0.4 239,305 + ABIE40_RS01205 0.10 -0.2 239,305 + ABIE40_RS01205 0.10 -3.3 239,306 - ABIE40_RS01205 0.10 -0.1 239,306 - ABIE40_RS01205 0.10 -0.1 239,306 - ABIE40_RS01205 0.10 -0.8 239,334 + ABIE40_RS01205 0.12 -0.2 239,446 + ABIE40_RS01205 0.19 -1.7 239,447 - ABIE40_RS01205 0.19 -0.8 239,575 - ABIE40_RS01205 0.27 -1.8 239,688 - ABIE40_RS01205 0.34 -1.7 239,917 + ABIE40_RS01205 0.49 -0.8 239,918 - ABIE40_RS01205 0.49 -1.1 239,918 - ABIE40_RS01205 0.49 +0.8 240,168 + ABIE40_RS01205 0.65 -1.2 240,168 + ABIE40_RS01205 0.65 -0.7 240,168 + ABIE40_RS01205 0.65 -1.8 240,169 - ABIE40_RS01205 0.65 -1.7 240,169 - ABIE40_RS01205 0.65 -1.7 240,176 + ABIE40_RS01205 0.65 -0.5 240,176 + ABIE40_RS01205 0.65 -1.5 240,177 - ABIE40_RS01205 0.65 -0.2 240,260 + ABIE40_RS01205 0.70 -1.0 240,260 + ABIE40_RS01205 0.70 -0.8 240,261 - ABIE40_RS01205 0.70 +0.5 240,261 - ABIE40_RS01205 0.70 -0.5 240,429 + ABIE40_RS01205 0.81 -0.6 240,430 - ABIE40_RS01205 0.81 -0.1 240,430 - ABIE40_RS01205 0.81 +0.5 240,505 + ABIE40_RS01205 0.86 -2.3 240,505 + ABIE40_RS01205 0.86 -1.5 240,505 + ABIE40_RS01205 0.86 -1.4 240,506 - ABIE40_RS01205 0.86 -1.3 240,727 + +0.1 240,727 + -0.5 240,728 - -0.9 240,834 + ABIE40_RS01210 0.16 -0.8 240,834 + ABIE40_RS01210 0.16 -0.3 240,834 + ABIE40_RS01210 0.16 -1.1 240,834 + ABIE40_RS01210 0.16 -1.5 240,834 + ABIE40_RS01210 0.16 -0.0 240,834 + ABIE40_RS01210 0.16 -1.2 240,835 - ABIE40_RS01210 0.16 -0.5 240,835 - ABIE40_RS01210 0.16 +0.0 240,835 - ABIE40_RS01210 0.16 -0.3 240,835 - ABIE40_RS01210 0.16 -0.8 240,835 - ABIE40_RS01210 0.16 -0.5 240,856 + ABIE40_RS01210 0.20 -0.5 240,856 + ABIE40_RS01210 0.20 +0.5 240,856 + ABIE40_RS01210 0.20 +0.6 240,857 - ABIE40_RS01210 0.20 +0.5 240,888 + ABIE40_RS01210 0.25 -0.7 240,888 + ABIE40_RS01210 0.25 +0.1 240,888 + ABIE40_RS01210 0.25 -0.3 240,889 - ABIE40_RS01210 0.25 +0.9 240,920 - ABIE40_RS01210 0.31 +0.5 240,924 + ABIE40_RS01210 0.31 -0.4 240,924 + ABIE40_RS01210 0.31 -1.5 240,924 + ABIE40_RS01210 0.31 -1.0 240,924 + ABIE40_RS01210 0.31 -1.3 240,924 + ABIE40_RS01210 0.31 -1.6 240,924 + ABIE40_RS01210 0.31 +0.8 240,924 + ABIE40_RS01210 0.31 +0.1 240,924 + ABIE40_RS01210 0.31 +0.5 240,924 + ABIE40_RS01210 0.31 -0.1 240,924 + ABIE40_RS01210 0.31 -0.1 240,925 - ABIE40_RS01210 0.31 -0.7 240,925 - ABIE40_RS01210 0.31 -0.2 240,925 - ABIE40_RS01210 0.31 +0.5 240,925 - ABIE40_RS01210 0.31 +0.1 240,925 - ABIE40_RS01210 0.31 +0.1 240,925 - ABIE40_RS01210 0.31 -0.4 240,925 - ABIE40_RS01210 0.31 +0.4 240,925 - ABIE40_RS01210 0.31 -0.3 241,107 + ABIE40_RS01210 0.62 -1.6 241,165 + ABIE40_RS01210 0.72 -1.0 241,165 + ABIE40_RS01210 0.72 -0.4 241,165 + ABIE40_RS01210 0.72 +1.2 241,165 + ABIE40_RS01210 0.72 -0.7 241,165 + ABIE40_RS01210 0.72 -0.6 241,165 + ABIE40_RS01210 0.72 -0.1 241,165 + ABIE40_RS01210 0.72 +0.3 241,165 + ABIE40_RS01210 0.72 +0.0 241,166 - ABIE40_RS01210 0.72 -1.0 241,166 - ABIE40_RS01210 0.72 -1.0 241,166 - ABIE40_RS01210 0.72 -0.1 241,166 - ABIE40_RS01210 0.72 -1.9 241,166 - ABIE40_RS01210 0.72 -1.1 241,166 - ABIE40_RS01210 0.72 -0.4 241,166 - ABIE40_RS01210 0.72 +0.8 241,258 - ABIE40_RS01210 0.88 -0.6 241,325 + +0.8 241,325 + -1.8 241,325 + -1.9 241,326 - -0.3 241,326 - -0.5 241,326 - -0.1 241,436 - +1.8 241,515 + ABIE40_RS01215 0.14 -0.7 241,515 + ABIE40_RS01215 0.14 -0.6 241,516 - ABIE40_RS01215 0.14 +0.1 241,516 - ABIE40_RS01215 0.14 -1.8 241,516 - ABIE40_RS01215 0.14 -0.4 241,569 + ABIE40_RS01215 0.18 -2.1 241,569 + ABIE40_RS01215 0.18 +0.8 241,569 + ABIE40_RS01215 0.18 +2.4 241,570 - ABIE40_RS01215 0.18 -0.8 241,570 - ABIE40_RS01215 0.18 +0.6 241,570 - ABIE40_RS01215 0.18 +0.5 241,570 - ABIE40_RS01215 0.18 -0.4
Or see this region's nucleotide sequence