Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00910 and ABIE40_RS00915 are separated by 114 nucleotides ABIE40_RS00915 and ABIE40_RS00920 are separated by 21 nucleotides ABIE40_RS00920 and ABIE40_RS00925 are separated by 3 nucleotides ABIE40_RS00925 and ABIE40_RS00930 overlap by 1 nucleotides
ABIE40_RS00910: ABIE40_RS00910 - M17 family metallopeptidase, at 187,062 to 188,450
_RS00910
ABIE40_RS00915: ABIE40_RS00915 - MarR family winged helix-turn-helix transcriptional regulator, at 188,565 to 188,915
_RS00915
ABIE40_RS00920: ABIE40_RS00920 - NlpC/P60 family protein, at 188,937 to 189,791
_RS00920
ABIE40_RS00925: ABIE40_RS00925 - ABC transporter permease, at 189,795 to 190,646
_RS00925
ABIE40_RS00930: ABIE40_RS00930 - ABC transporter permease, at 190,646 to 191,596
_RS00930
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.956 kb on + strand, within ABIE40_RS00910 at 187.956 kb on + strand, within ABIE40_RS00910 at 187.956 kb on + strand, within ABIE40_RS00910 at 187.957 kb on - strand, within ABIE40_RS00910 at 187.957 kb on - strand, within ABIE40_RS00910 at 187.957 kb on - strand, within ABIE40_RS00910 at 187.957 kb on - strand, within ABIE40_RS00910 at 187.957 kb on - strand, within ABIE40_RS00910 at 187.994 kb on + strand, within ABIE40_RS00910 at 187.994 kb on + strand, within ABIE40_RS00910 at 187.994 kb on + strand, within ABIE40_RS00910 at 188.037 kb on + strand, within ABIE40_RS00910 at 188.037 kb on + strand, within ABIE40_RS00910 at 188.038 kb on - strand, within ABIE40_RS00910 at 188.072 kb on + strand, within ABIE40_RS00910 at 188.072 kb on + strand, within ABIE40_RS00910 at 188.211 kb on + strand, within ABIE40_RS00910 at 188.211 kb on + strand, within ABIE40_RS00910 at 188.211 kb on + strand, within ABIE40_RS00910 at 188.211 kb on + strand, within ABIE40_RS00910 at 188.211 kb on + strand, within ABIE40_RS00910 at 188.211 kb on + strand, within ABIE40_RS00910 at 188.211 kb on + strand, within ABIE40_RS00910 at 188.211 kb on + strand, within ABIE40_RS00910 at 188.212 kb on - strand, within ABIE40_RS00910 at 188.212 kb on - strand, within ABIE40_RS00910 at 188.212 kb on - strand, within ABIE40_RS00910 at 188.212 kb on - strand, within ABIE40_RS00910 at 188.212 kb on - strand, within ABIE40_RS00910 at 188.212 kb on - strand, within ABIE40_RS00910 at 188.212 kb on - strand, within ABIE40_RS00910 at 188.212 kb on - strand, within ABIE40_RS00910 at 188.212 kb on - strand, within ABIE40_RS00910 at 188.212 kb on - strand, within ABIE40_RS00910 at 188.213 kb on + strand, within ABIE40_RS00910 at 188.214 kb on - strand, within ABIE40_RS00910 at 188.214 kb on - strand, within ABIE40_RS00910 at 188.253 kb on - strand, within ABIE40_RS00910 at 188.355 kb on + strand at 188.356 kb on - strand at 188.356 kb on - strand at 188.424 kb on + strand at 188.424 kb on + strand at 188.681 kb on + strand, within ABIE40_RS00915 at 188.681 kb on + strand, within ABIE40_RS00915 at 188.681 kb on + strand, within ABIE40_RS00915 at 188.681 kb on + strand, within ABIE40_RS00915 at 188.681 kb on + strand, within ABIE40_RS00915 at 188.681 kb on + strand, within ABIE40_RS00915 at 188.681 kb on + strand, within ABIE40_RS00915 at 188.681 kb on + strand, within ABIE40_RS00915 at 188.681 kb on + strand, within ABIE40_RS00915 at 188.681 kb on + strand, within ABIE40_RS00915 at 188.682 kb on - strand, within ABIE40_RS00915 at 188.682 kb on - strand, within ABIE40_RS00915 at 188.682 kb on - strand, within ABIE40_RS00915 at 188.682 kb on - strand, within ABIE40_RS00915 at 188.682 kb on - strand, within ABIE40_RS00915 at 188.682 kb on - strand, within ABIE40_RS00915 at 188.682 kb on - strand, within ABIE40_RS00915 at 188.682 kb on - strand, within ABIE40_RS00915 at 188.682 kb on - strand, within ABIE40_RS00915 at 188.682 kb on - strand, within ABIE40_RS00915 at 188.682 kb on - strand, within ABIE40_RS00915 at 188.685 kb on + strand, within ABIE40_RS00915 at 188.685 kb on + strand, within ABIE40_RS00915 at 188.685 kb on + strand, within ABIE40_RS00915 at 188.685 kb on + strand, within ABIE40_RS00915 at 188.685 kb on + strand, within ABIE40_RS00915 at 188.686 kb on - strand, within ABIE40_RS00915 at 188.686 kb on - strand, within ABIE40_RS00915 at 188.686 kb on - strand, within ABIE40_RS00915 at 188.686 kb on - strand, within ABIE40_RS00915 at 188.741 kb on + strand, within ABIE40_RS00915 at 188.742 kb on - strand, within ABIE40_RS00915 at 188.742 kb on - strand, within ABIE40_RS00915 at 188.742 kb on - strand, within ABIE40_RS00915 at 188.754 kb on - strand, within ABIE40_RS00915 at 188.823 kb on - strand, within ABIE40_RS00915 at 188.859 kb on + strand, within ABIE40_RS00915 at 188.859 kb on + strand, within ABIE40_RS00915 at 188.911 kb on + strand at 188.913 kb on + strand at 188.913 kb on + strand at 188.925 kb on + strand at 188.925 kb on + strand at 188.926 kb on - strand at 188.967 kb on + strand at 188.967 kb on + strand at 188.967 kb on + strand at 188.967 kb on + strand at 188.968 kb on - strand at 188.968 kb on - strand at 188.968 kb on - strand at 188.969 kb on + strand at 188.969 kb on + strand at 188.969 kb on + strand at 188.969 kb on + strand at 188.970 kb on - strand at 188.970 kb on - strand at 188.970 kb on - strand at 189.183 kb on + strand, within ABIE40_RS00920 at 189.184 kb on - strand, within ABIE40_RS00920 at 189.184 kb on - strand, within ABIE40_RS00920 at 189.192 kb on + strand, within ABIE40_RS00920 at 189.192 kb on + strand, within ABIE40_RS00920 at 189.193 kb on - strand, within ABIE40_RS00920 at 189.193 kb on - strand, within ABIE40_RS00920 at 189.267 kb on + strand, within ABIE40_RS00920 at 189.268 kb on - strand, within ABIE40_RS00920 at 189.294 kb on + strand, within ABIE40_RS00920 at 189.295 kb on - strand, within ABIE40_RS00920 at 189.363 kb on + strand, within ABIE40_RS00920 at 189.363 kb on + strand, within ABIE40_RS00920 at 189.363 kb on + strand, within ABIE40_RS00920 at 189.363 kb on + strand, within ABIE40_RS00920 at 189.364 kb on - strand, within ABIE40_RS00920 at 189.438 kb on + strand, within ABIE40_RS00920 at 189.438 kb on + strand, within ABIE40_RS00920 at 189.438 kb on + strand, within ABIE40_RS00920 at 189.468 kb on - strand, within ABIE40_RS00920 at 189.474 kb on + strand, within ABIE40_RS00920 at 189.572 kb on + strand, within ABIE40_RS00920 at 189.573 kb on - strand, within ABIE40_RS00920 at 189.594 kb on - strand, within ABIE40_RS00920 at 189.674 kb on + strand, within ABIE40_RS00920 at 189.674 kb on + strand, within ABIE40_RS00920 at 189.744 kb on - strand at 189.756 kb on + strand at 189.756 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.789 kb on + strand at 189.790 kb on - strand at 189.790 kb on - strand at 189.790 kb on - strand at 189.790 kb on - strand at 189.790 kb on - strand at 189.790 kb on - strand at 189.796 kb on + strand at 189.797 kb on - strand at 190.052 kb on + strand, within ABIE40_RS00925 at 190.053 kb on - strand, within ABIE40_RS00925 at 190.120 kb on + strand, within ABIE40_RS00925 at 190.120 kb on + strand, within ABIE40_RS00925 at 190.120 kb on + strand, within ABIE40_RS00925 at 190.120 kb on + strand, within ABIE40_RS00925 at 190.121 kb on - strand, within ABIE40_RS00925 at 190.141 kb on - strand, within ABIE40_RS00925 at 190.272 kb on + strand, within ABIE40_RS00925 at 190.273 kb on - strand, within ABIE40_RS00925 at 190.544 kb on + strand, within ABIE40_RS00925 at 190.544 kb on + strand, within ABIE40_RS00925 at 190.545 kb on - strand, within ABIE40_RS00925 at 190.545 kb on - strand, within ABIE40_RS00925 at 190.545 kb on - strand, within ABIE40_RS00925 at 190.545 kb on - strand, within ABIE40_RS00925 at 190.545 kb on - strand, within ABIE40_RS00925 at 190.552 kb on - strand, within ABIE40_RS00925 at 190.552 kb on - strand, within ABIE40_RS00925 at 190.552 kb on - strand, within ABIE40_RS00925 at 190.587 kb on - strand at 190.686 kb on + strand at 190.686 kb on + strand at 190.687 kb on - strand at 190.687 kb on - strand at 190.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 187,956 + ABIE40_RS00910 0.64 -0.2 187,956 + ABIE40_RS00910 0.64 +0.5 187,956 + ABIE40_RS00910 0.64 -0.8 187,957 - ABIE40_RS00910 0.64 -0.4 187,957 - ABIE40_RS00910 0.64 -1.4 187,957 - ABIE40_RS00910 0.64 +1.8 187,957 - ABIE40_RS00910 0.64 -1.5 187,957 - ABIE40_RS00910 0.64 -1.1 187,994 + ABIE40_RS00910 0.67 -0.9 187,994 + ABIE40_RS00910 0.67 -2.2 187,994 + ABIE40_RS00910 0.67 -0.9 188,037 + ABIE40_RS00910 0.70 -0.8 188,037 + ABIE40_RS00910 0.70 -0.3 188,038 - ABIE40_RS00910 0.70 -1.0 188,072 + ABIE40_RS00910 0.73 +1.4 188,072 + ABIE40_RS00910 0.73 -1.6 188,211 + ABIE40_RS00910 0.83 -0.4 188,211 + ABIE40_RS00910 0.83 -2.2 188,211 + ABIE40_RS00910 0.83 -2.2 188,211 + ABIE40_RS00910 0.83 -0.5 188,211 + ABIE40_RS00910 0.83 +0.2 188,211 + ABIE40_RS00910 0.83 +1.0 188,211 + ABIE40_RS00910 0.83 -1.1 188,211 + ABIE40_RS00910 0.83 -0.9 188,212 - ABIE40_RS00910 0.83 -2.9 188,212 - ABIE40_RS00910 0.83 -0.3 188,212 - ABIE40_RS00910 0.83 -1.5 188,212 - ABIE40_RS00910 0.83 -0.5 188,212 - ABIE40_RS00910 0.83 -0.6 188,212 - ABIE40_RS00910 0.83 +0.6 188,212 - ABIE40_RS00910 0.83 -0.8 188,212 - ABIE40_RS00910 0.83 -0.1 188,212 - ABIE40_RS00910 0.83 +0.0 188,212 - ABIE40_RS00910 0.83 -1.4 188,213 + ABIE40_RS00910 0.83 -1.6 188,214 - ABIE40_RS00910 0.83 -0.6 188,214 - ABIE40_RS00910 0.83 -2.9 188,253 - ABIE40_RS00910 0.86 -0.6 188,355 + -1.4 188,356 - -0.9 188,356 - +0.1 188,424 + -0.5 188,424 + -1.2 188,681 + ABIE40_RS00915 0.33 +0.7 188,681 + ABIE40_RS00915 0.33 -0.2 188,681 + ABIE40_RS00915 0.33 +1.6 188,681 + ABIE40_RS00915 0.33 +1.8 188,681 + ABIE40_RS00915 0.33 +0.8 188,681 + ABIE40_RS00915 0.33 +0.3 188,681 + ABIE40_RS00915 0.33 -0.9 188,681 + ABIE40_RS00915 0.33 +0.5 188,681 + ABIE40_RS00915 0.33 -0.0 188,681 + ABIE40_RS00915 0.33 -1.5 188,682 - ABIE40_RS00915 0.33 +0.6 188,682 - ABIE40_RS00915 0.33 +1.3 188,682 - ABIE40_RS00915 0.33 -0.7 188,682 - ABIE40_RS00915 0.33 -1.5 188,682 - ABIE40_RS00915 0.33 -0.1 188,682 - ABIE40_RS00915 0.33 +0.4 188,682 - ABIE40_RS00915 0.33 +0.3 188,682 - ABIE40_RS00915 0.33 -1.0 188,682 - ABIE40_RS00915 0.33 +0.9 188,682 - ABIE40_RS00915 0.33 +1.8 188,682 - ABIE40_RS00915 0.33 +0.2 188,685 + ABIE40_RS00915 0.34 +0.1 188,685 + ABIE40_RS00915 0.34 -0.2 188,685 + ABIE40_RS00915 0.34 -0.1 188,685 + ABIE40_RS00915 0.34 +1.2 188,685 + ABIE40_RS00915 0.34 +0.9 188,686 - ABIE40_RS00915 0.34 -1.1 188,686 - ABIE40_RS00915 0.34 -0.2 188,686 - ABIE40_RS00915 0.34 -0.6 188,686 - ABIE40_RS00915 0.34 +0.4 188,741 + ABIE40_RS00915 0.50 +1.6 188,742 - ABIE40_RS00915 0.50 -0.2 188,742 - ABIE40_RS00915 0.50 -0.5 188,742 - ABIE40_RS00915 0.50 -0.3 188,754 - ABIE40_RS00915 0.54 -0.7 188,823 - ABIE40_RS00915 0.74 +0.2 188,859 + ABIE40_RS00915 0.84 -0.9 188,859 + ABIE40_RS00915 0.84 +0.2 188,911 + -0.5 188,913 + +0.2 188,913 + -0.4 188,925 + +0.1 188,925 + +0.8 188,926 - -0.4 188,967 + +0.2 188,967 + -0.9 188,967 + -1.5 188,967 + -0.1 188,968 - -1.1 188,968 - -0.7 188,968 - -0.2 188,969 + -2.4 188,969 + -1.1 188,969 + -3.5 188,969 + +0.8 188,970 - -1.2 188,970 - +0.0 188,970 - -0.5 189,183 + ABIE40_RS00920 0.29 +0.2 189,184 - ABIE40_RS00920 0.29 +0.2 189,184 - ABIE40_RS00920 0.29 -1.2 189,192 + ABIE40_RS00920 0.30 +0.8 189,192 + ABIE40_RS00920 0.30 -2.3 189,193 - ABIE40_RS00920 0.30 -1.9 189,193 - ABIE40_RS00920 0.30 -2.0 189,267 + ABIE40_RS00920 0.39 -0.2 189,268 - ABIE40_RS00920 0.39 -1.0 189,294 + ABIE40_RS00920 0.42 +0.7 189,295 - ABIE40_RS00920 0.42 -1.3 189,363 + ABIE40_RS00920 0.50 -1.8 189,363 + ABIE40_RS00920 0.50 +0.2 189,363 + ABIE40_RS00920 0.50 -3.2 189,363 + ABIE40_RS00920 0.50 -0.5 189,364 - ABIE40_RS00920 0.50 -1.3 189,438 + ABIE40_RS00920 0.59 -2.4 189,438 + ABIE40_RS00920 0.59 -1.5 189,438 + ABIE40_RS00920 0.59 -0.8 189,468 - ABIE40_RS00920 0.62 -0.2 189,474 + ABIE40_RS00920 0.63 -1.5 189,572 + ABIE40_RS00920 0.74 -1.2 189,573 - ABIE40_RS00920 0.74 +1.8 189,594 - ABIE40_RS00920 0.77 +1.8 189,674 + ABIE40_RS00920 0.86 -1.2 189,674 + ABIE40_RS00920 0.86 -1.2 189,744 - -1.1 189,756 + -0.8 189,756 + -0.5 189,789 + -0.5 189,789 + +0.9 189,789 + +1.7 189,789 + +0.5 189,789 + -2.2 189,789 + -0.1 189,789 + +0.8 189,790 - +0.4 189,790 - -1.1 189,790 - -0.8 189,790 - -1.1 189,790 - +0.4 189,790 - +0.1 189,796 + -0.1 189,797 - +0.6 190,052 + ABIE40_RS00925 0.30 -2.4 190,053 - ABIE40_RS00925 0.30 +0.6 190,120 + ABIE40_RS00925 0.38 +1.8 190,120 + ABIE40_RS00925 0.38 -0.2 190,120 + ABIE40_RS00925 0.38 +0.6 190,120 + ABIE40_RS00925 0.38 +1.4 190,121 - ABIE40_RS00925 0.38 -1.2 190,141 - ABIE40_RS00925 0.41 -0.5 190,272 + ABIE40_RS00925 0.56 -0.5 190,273 - ABIE40_RS00925 0.56 -0.8 190,544 + ABIE40_RS00925 0.88 +0.8 190,544 + ABIE40_RS00925 0.88 -0.5 190,545 - ABIE40_RS00925 0.88 +0.2 190,545 - ABIE40_RS00925 0.88 +1.6 190,545 - ABIE40_RS00925 0.88 +1.5 190,545 - ABIE40_RS00925 0.88 -0.2 190,545 - ABIE40_RS00925 0.88 -0.8 190,552 - ABIE40_RS00925 0.89 -1.7 190,552 - ABIE40_RS00925 0.89 +0.2 190,552 - ABIE40_RS00925 0.89 -0.6 190,587 - +0.7 190,686 + -0.3 190,686 + +0.4 190,687 - -1.2 190,687 - -0.7 190,687 - +1.1
Or see this region's nucleotide sequence