Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30905 and ABIE40_RS30910 are separated by 1 nucleotides ABIE40_RS30910 and ABIE40_RS30915 are separated by 462 nucleotides ABIE40_RS30915 and ABIE40_RS30920 are separated by 6 nucleotides
ABIE40_RS30905: ABIE40_RS30905 - cbb3-type cytochrome c oxidase subunit I, at 873,231 to 875,243
_RS30905
ABIE40_RS30910: ABIE40_RS30910 - ubiquinol oxidase subunit II, at 875,245 to 876,138
_RS30910
ABIE40_RS30915: ABIE40_RS30915 - hypothetical protein, at 876,601 to 876,729
_RS30915
ABIE40_RS30920: ABIE40_RS30920 - glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase, at 876,736 to 879,081
_RS30920
Position (kb) 875
876
877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.302 kb on - strand, within ABIE40_RS30905 at 874.475 kb on - strand, within ABIE40_RS30905 at 874.582 kb on + strand, within ABIE40_RS30905 at 874.583 kb on - strand, within ABIE40_RS30905 at 874.583 kb on - strand, within ABIE40_RS30905 at 874.626 kb on - strand, within ABIE40_RS30905 at 874.678 kb on + strand, within ABIE40_RS30905 at 874.679 kb on - strand, within ABIE40_RS30905 at 874.679 kb on - strand, within ABIE40_RS30905 at 874.679 kb on - strand, within ABIE40_RS30905 at 874.681 kb on + strand, within ABIE40_RS30905 at 874.682 kb on - strand, within ABIE40_RS30905 at 874.682 kb on - strand, within ABIE40_RS30905 at 874.705 kb on + strand, within ABIE40_RS30905 at 874.866 kb on + strand, within ABIE40_RS30905 at 874.867 kb on - strand, within ABIE40_RS30905 at 874.952 kb on - strand, within ABIE40_RS30905 at 874.952 kb on - strand, within ABIE40_RS30905 at 875.046 kb on + strand at 875.046 kb on + strand at 875.047 kb on - strand at 875.047 kb on - strand at 875.062 kb on + strand at 875.063 kb on - strand at 875.063 kb on - strand at 875.063 kb on - strand at 875.096 kb on + strand at 875.229 kb on + strand at 875.230 kb on - strand at 875.336 kb on - strand, within ABIE40_RS30910 at 875.336 kb on - strand, within ABIE40_RS30910 at 875.365 kb on - strand, within ABIE40_RS30910 at 875.370 kb on - strand, within ABIE40_RS30910 at 875.370 kb on - strand, within ABIE40_RS30910 at 875.736 kb on - strand, within ABIE40_RS30910 at 875.740 kb on - strand, within ABIE40_RS30910 at 875.860 kb on + strand, within ABIE40_RS30910 at 875.909 kb on + strand, within ABIE40_RS30910 at 876.126 kb on + strand at 876.126 kb on + strand at 876.127 kb on - strand at 876.210 kb on - strand at 876.260 kb on + strand at 876.391 kb on - strand at 876.391 kb on - strand at 876.556 kb on + strand at 876.618 kb on + strand, within ABIE40_RS30915 at 876.728 kb on - strand at 876.728 kb on - strand at 876.744 kb on + strand at 876.744 kb on + strand at 876.745 kb on - strand at 876.745 kb on - strand at 876.745 kb on - strand at 876.745 kb on - strand at 876.749 kb on + strand at 876.750 kb on - strand at 876.765 kb on + strand at 876.908 kb on - strand at 877.072 kb on + strand, within ABIE40_RS30920
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 874,302 - ABIE40_RS30905 0.53 +0.4 874,475 - ABIE40_RS30905 0.62 +1.8 874,582 + ABIE40_RS30905 0.67 -0.8 874,583 - ABIE40_RS30905 0.67 -2.9 874,583 - ABIE40_RS30905 0.67 -3.2 874,626 - ABIE40_RS30905 0.69 -1.0 874,678 + ABIE40_RS30905 0.72 -0.2 874,679 - ABIE40_RS30905 0.72 +0.2 874,679 - ABIE40_RS30905 0.72 -2.2 874,679 - ABIE40_RS30905 0.72 +1.1 874,681 + ABIE40_RS30905 0.72 -0.3 874,682 - ABIE40_RS30905 0.72 +0.8 874,682 - ABIE40_RS30905 0.72 -0.7 874,705 + ABIE40_RS30905 0.73 -0.0 874,866 + ABIE40_RS30905 0.81 +0.3 874,867 - ABIE40_RS30905 0.81 -1.7 874,952 - ABIE40_RS30905 0.85 -1.5 874,952 - ABIE40_RS30905 0.85 +1.8 875,046 + +0.2 875,046 + -1.7 875,047 - +1.2 875,047 - +1.8 875,062 + -0.2 875,063 - +0.8 875,063 - -0.0 875,063 - -1.4 875,096 + -2.5 875,229 + +0.6 875,230 - +1.8 875,336 - ABIE40_RS30910 0.10 -1.8 875,336 - ABIE40_RS30910 0.10 -3.3 875,365 - ABIE40_RS30910 0.13 -1.0 875,370 - ABIE40_RS30910 0.14 -2.4 875,370 - ABIE40_RS30910 0.14 -2.9 875,736 - ABIE40_RS30910 0.55 +0.2 875,740 - ABIE40_RS30910 0.55 +0.8 875,860 + ABIE40_RS30910 0.69 -0.7 875,909 + ABIE40_RS30910 0.74 -1.1 876,126 + -0.8 876,126 + -1.0 876,127 - -2.3 876,210 - -2.0 876,260 + -0.3 876,391 - -0.8 876,391 - +2.0 876,556 + +0.8 876,618 + ABIE40_RS30915 0.13 -0.6 876,728 - +0.5 876,728 - -1.2 876,744 + +0.0 876,744 + -1.2 876,745 - +0.0 876,745 - -0.1 876,745 - -1.2 876,745 - +0.5 876,749 + +0.8 876,750 - -1.0 876,765 + +0.4 876,908 - +0.8 877,072 + ABIE40_RS30920 0.14 -2.2
Or see this region's nucleotide sequence