Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30770 and ABIE40_RS30775 are separated by 106 nucleotides ABIE40_RS30775 and ABIE40_RS30780 are separated by 482 nucleotides
ABIE40_RS30770: ABIE40_RS30770 - neutral zinc metallopeptidase, at 842,095 to 843,018
_RS30770
ABIE40_RS30775: ABIE40_RS30775 - ferritin-like domain-containing protein, at 843,125 to 843,637
_RS30775
ABIE40_RS30780: ABIE40_RS30780 - malto-oligosyltrehalose trehalohydrolase, at 844,120 to 845,901
_RS30780
Position (kb) 843
844 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 842.210 kb on + strand, within ABIE40_RS30770 at 842.312 kb on + strand, within ABIE40_RS30770 at 842.312 kb on + strand, within ABIE40_RS30770 at 842.440 kb on + strand, within ABIE40_RS30770 at 842.471 kb on + strand, within ABIE40_RS30770 at 842.472 kb on - strand, within ABIE40_RS30770 at 842.541 kb on - strand, within ABIE40_RS30770 at 842.565 kb on - strand, within ABIE40_RS30770 at 842.646 kb on - strand, within ABIE40_RS30770 at 842.646 kb on - strand, within ABIE40_RS30770 at 842.682 kb on + strand, within ABIE40_RS30770 at 842.682 kb on + strand, within ABIE40_RS30770 at 842.682 kb on + strand, within ABIE40_RS30770 at 842.683 kb on - strand, within ABIE40_RS30770 at 842.716 kb on + strand, within ABIE40_RS30770 at 842.716 kb on + strand, within ABIE40_RS30770 at 842.716 kb on + strand, within ABIE40_RS30770 at 842.717 kb on - strand, within ABIE40_RS30770 at 842.852 kb on + strand, within ABIE40_RS30770 at 842.852 kb on + strand, within ABIE40_RS30770 at 842.853 kb on - strand, within ABIE40_RS30770 at 842.853 kb on - strand, within ABIE40_RS30770 at 842.947 kb on - strand at 842.947 kb on - strand at 843.050 kb on + strand at 843.053 kb on + strand at 843.126 kb on + strand at 843.127 kb on - strand at 843.217 kb on + strand, within ABIE40_RS30775 at 843.297 kb on + strand, within ABIE40_RS30775 at 843.640 kb on + strand at 843.829 kb on + strand at 843.830 kb on - strand at 843.936 kb on + strand at 843.984 kb on + strand at 843.991 kb on - strand at 844.011 kb on + strand at 844.011 kb on + strand at 844.011 kb on + strand at 844.011 kb on + strand at 844.093 kb on + strand at 844.103 kb on - strand at 844.108 kb on + strand at 844.108 kb on + strand at 844.109 kb on - strand at 844.150 kb on + strand at 844.150 kb on + strand at 844.151 kb on - strand at 844.297 kb on + strand at 844.299 kb on + strand, within ABIE40_RS30780 at 844.453 kb on + strand, within ABIE40_RS30780 at 844.583 kb on - strand, within ABIE40_RS30780 at 844.595 kb on - strand, within ABIE40_RS30780 at 844.595 kb on - strand, within ABIE40_RS30780 at 844.595 kb on - strand, within ABIE40_RS30780 at 844.612 kb on + strand, within ABIE40_RS30780 at 844.630 kb on + strand, within ABIE40_RS30780 at 844.630 kb on + strand, within ABIE40_RS30780 at 844.630 kb on + strand, within ABIE40_RS30780 at 844.630 kb on + strand, within ABIE40_RS30780 at 844.631 kb on - strand, within ABIE40_RS30780
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 842,210 + ABIE40_RS30770 0.12 +0.1 842,312 + ABIE40_RS30770 0.23 -0.6 842,312 + ABIE40_RS30770 0.23 +0.8 842,440 + ABIE40_RS30770 0.37 +0.6 842,471 + ABIE40_RS30770 0.41 +2.3 842,472 - ABIE40_RS30770 0.41 +3.2 842,541 - ABIE40_RS30770 0.48 -0.8 842,565 - ABIE40_RS30770 0.51 -1.3 842,646 - ABIE40_RS30770 0.60 +0.8 842,646 - ABIE40_RS30770 0.60 -1.9 842,682 + ABIE40_RS30770 0.64 +1.8 842,682 + ABIE40_RS30770 0.64 +0.2 842,682 + ABIE40_RS30770 0.64 +0.2 842,683 - ABIE40_RS30770 0.64 +1.2 842,716 + ABIE40_RS30770 0.67 -2.4 842,716 + ABIE40_RS30770 0.67 +0.5 842,716 + ABIE40_RS30770 0.67 +1.6 842,717 - ABIE40_RS30770 0.67 -2.2 842,852 + ABIE40_RS30770 0.82 -0.5 842,852 + ABIE40_RS30770 0.82 +2.8 842,853 - ABIE40_RS30770 0.82 +0.2 842,853 - ABIE40_RS30770 0.82 +0.6 842,947 - +1.3 842,947 - -1.0 843,050 + +0.2 843,053 + -0.2 843,126 + -3.7 843,127 - -1.1 843,217 + ABIE40_RS30775 0.18 -1.7 843,297 + ABIE40_RS30775 0.34 +1.8 843,640 + +5.1 843,829 + -0.7 843,830 - +1.2 843,936 + -0.0 843,984 + -1.8 843,991 - -1.8 844,011 + +0.6 844,011 + -0.5 844,011 + -1.2 844,011 + +1.6 844,093 + -1.9 844,103 - -0.2 844,108 + +0.4 844,108 + +2.8 844,109 - -0.7 844,150 + -1.2 844,150 + +0.6 844,151 - +0.1 844,297 + -0.5 844,299 + ABIE40_RS30780 0.10 -0.2 844,453 + ABIE40_RS30780 0.19 -1.7 844,583 - ABIE40_RS30780 0.26 +0.8 844,595 - ABIE40_RS30780 0.27 +0.1 844,595 - ABIE40_RS30780 0.27 -2.0 844,595 - ABIE40_RS30780 0.27 -2.1 844,612 + ABIE40_RS30780 0.28 -2.0 844,630 + ABIE40_RS30780 0.29 +0.3 844,630 + ABIE40_RS30780 0.29 -1.9 844,630 + ABIE40_RS30780 0.29 +0.9 844,630 + ABIE40_RS30780 0.29 +1.1 844,631 - ABIE40_RS30780 0.29 +0.8
Or see this region's nucleotide sequence