Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS30660

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS30645 and ABIE40_RS30650 overlap by 4 nucleotidesABIE40_RS30650 and ABIE40_RS30655 are separated by 9 nucleotidesABIE40_RS30655 and ABIE40_RS30660 are separated by 205 nucleotidesABIE40_RS30660 and ABIE40_RS30665 are separated by 23 nucleotides ABIE40_RS30645: ABIE40_RS30645 - PAS domain-containing protein, at 821,825 to 822,952 _RS30645 ABIE40_RS30650: ABIE40_RS30650 - response regulator, at 822,949 to 823,380 _RS30650 ABIE40_RS30655: ABIE40_RS30655 - hypothetical protein, at 823,390 to 823,605 _RS30655 ABIE40_RS30660: ABIE40_RS30660 - ferritin-like domain-containing protein, at 823,811 to 824,323 _RS30660 ABIE40_RS30665: ABIE40_RS30665 - DUF378 domain-containing protein, at 824,347 to 824,583 _RS30665 Position (kb) 823 824 825Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 822.832 kb on + strand, within ABIE40_RS30645at 822.956 kb on + strandat 822.956 kb on + strandat 822.956 kb on + strandat 822.957 kb on - strandat 822.960 kb on + strandat 823.035 kb on + strand, within ABIE40_RS30650at 823.113 kb on - strand, within ABIE40_RS30650at 823.113 kb on - strand, within ABIE40_RS30650at 823.171 kb on + strand, within ABIE40_RS30650at 823.171 kb on + strand, within ABIE40_RS30650at 823.483 kb on - strand, within ABIE40_RS30655at 823.498 kb on + strand, within ABIE40_RS30655at 823.560 kb on - strand, within ABIE40_RS30655at 823.604 kb on - strandat 823.680 kb on + strandat 823.687 kb on + strandat 823.687 kb on + strandat 823.711 kb on - strandat 823.711 kb on - strandat 823.711 kb on - strandat 823.711 kb on - strandat 823.745 kb on + strandat 823.790 kb on + strandat 823.790 kb on + strandat 823.805 kb on - strandat 823.984 kb on - strand, within ABIE40_RS30660at 823.984 kb on - strand, within ABIE40_RS30660at 823.984 kb on - strand, within ABIE40_RS30660at 824.013 kb on + strand, within ABIE40_RS30660at 824.126 kb on + strand, within ABIE40_RS30660at 824.229 kb on - strand, within ABIE40_RS30660at 824.348 kb on + strandat 824.447 kb on + strand, within ABIE40_RS30665at 824.447 kb on + strand, within ABIE40_RS30665at 824.448 kb on - strand, within ABIE40_RS30665at 824.572 kb on + strandat 824.674 kb on + strandat 824.674 kb on + strandat 824.675 kb on - strandat 824.716 kb on + strandat 824.716 kb on + strandat 824.717 kb on - strandat 824.717 kb on - strandat 824.759 kb on - strandat 824.759 kb on - strandat 824.811 kb on + strandat 824.811 kb on + strandat 824.812 kb on - strandat 824.932 kb on + strandat 824.933 kb on - strandat 824.933 kb on - strandat 825.112 kb on + strandat 825.229 kb on + strandat 825.229 kb on + strandat 825.229 kb on + strandat 825.230 kb on - strandat 825.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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822,832 + ABIE40_RS30645 0.89 -0.1
822,956 + -2.5
822,956 + -2.5
822,956 + +2.2
822,957 - +0.8
822,960 + +0.1
823,035 + ABIE40_RS30650 0.20 +0.1
823,113 - ABIE40_RS30650 0.38 -0.9
823,113 - ABIE40_RS30650 0.38 -1.9
823,171 + ABIE40_RS30650 0.51 +0.5
823,171 + ABIE40_RS30650 0.51 -0.1
823,483 - ABIE40_RS30655 0.43 -0.5
823,498 + ABIE40_RS30655 0.50 +1.2
823,560 - ABIE40_RS30655 0.79 -1.2
823,604 - +0.6
823,680 + -0.2
823,687 + +0.4
823,687 + +0.7
823,711 - -1.1
823,711 - -1.5
823,711 - -0.6
823,711 - -0.0
823,745 + -0.2
823,790 + -2.6
823,790 + +1.8
823,805 - -0.4
823,984 - ABIE40_RS30660 0.34 -0.5
823,984 - ABIE40_RS30660 0.34 -2.7
823,984 - ABIE40_RS30660 0.34 -0.2
824,013 + ABIE40_RS30660 0.39 -2.9
824,126 + ABIE40_RS30660 0.61 -1.8
824,229 - ABIE40_RS30660 0.81 -1.8
824,348 + +0.2
824,447 + ABIE40_RS30665 0.42 +0.1
824,447 + ABIE40_RS30665 0.42 -0.2
824,448 - ABIE40_RS30665 0.43 -0.6
824,572 + +1.8
824,674 + +1.8
824,674 + +1.2
824,675 - +1.3
824,716 + -2.0
824,716 + -0.2
824,717 - +2.4
824,717 - +1.8
824,759 - -0.5
824,759 - +0.8
824,811 + +0.8
824,811 + -1.1
824,812 - -1.2
824,932 + -0.5
824,933 - -0.1
824,933 - -1.5
825,112 + -0.2
825,229 + -0.1
825,229 + -1.2
825,229 + +0.2
825,230 - -0.2
825,230 - +0.0

Or see this region's nucleotide sequence