Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29625 and ABIE40_RS29630 overlap by 1 nucleotides ABIE40_RS29630 and ABIE40_RS29635 overlap by 8 nucleotides ABIE40_RS29635 and ABIE40_RS29640 are separated by 16 nucleotides
ABIE40_RS29625: ABIE40_RS29625 - NAD(P)-dependent oxidoreductase, at 621,194 to 622,231
_RS29625
ABIE40_RS29630: ABIE40_RS29630 - allantoinase PuuE, at 622,231 to 623,139
_RS29630
ABIE40_RS29635: ABIE40_RS29635 - thiamine pyrophosphate-requiring protein, at 623,132 to 624,823
_RS29635
ABIE40_RS29640: ABIE40_RS29640 - dihydroorotase family protein, at 624,840 to 626,174
_RS29640
Position (kb) 623
624
625 Strain fitness (log2 ratio) -2
-1
0
1
2 at 622.184 kb on + strand at 622.184 kb on + strand at 622.185 kb on - strand at 622.185 kb on - strand at 622.185 kb on - strand at 622.342 kb on + strand, within ABIE40_RS29630 at 622.402 kb on + strand, within ABIE40_RS29630 at 622.402 kb on + strand, within ABIE40_RS29630 at 622.402 kb on + strand, within ABIE40_RS29630 at 622.403 kb on - strand, within ABIE40_RS29630 at 622.403 kb on - strand, within ABIE40_RS29630 at 622.403 kb on - strand, within ABIE40_RS29630 at 622.405 kb on - strand, within ABIE40_RS29630 at 622.407 kb on + strand, within ABIE40_RS29630 at 622.507 kb on + strand, within ABIE40_RS29630 at 622.783 kb on + strand, within ABIE40_RS29630 at 622.786 kb on + strand, within ABIE40_RS29630 at 622.885 kb on + strand, within ABIE40_RS29630 at 622.903 kb on + strand, within ABIE40_RS29630 at 622.951 kb on + strand, within ABIE40_RS29630 at 622.951 kb on + strand, within ABIE40_RS29630 at 622.953 kb on + strand, within ABIE40_RS29630 at 622.953 kb on + strand, within ABIE40_RS29630 at 622.954 kb on - strand, within ABIE40_RS29630 at 622.954 kb on - strand, within ABIE40_RS29630 at 622.954 kb on - strand, within ABIE40_RS29630 at 623.004 kb on - strand, within ABIE40_RS29630 at 623.004 kb on - strand, within ABIE40_RS29630 at 623.107 kb on - strand at 623.140 kb on + strand at 623.141 kb on - strand at 623.141 kb on - strand at 623.141 kb on - strand at 623.141 kb on - strand at 623.147 kb on + strand at 623.147 kb on + strand at 623.148 kb on - strand at 623.148 kb on - strand at 623.148 kb on - strand at 623.205 kb on - strand at 623.205 kb on - strand at 623.206 kb on + strand at 623.348 kb on + strand, within ABIE40_RS29635 at 623.348 kb on + strand, within ABIE40_RS29635 at 623.349 kb on - strand, within ABIE40_RS29635 at 623.357 kb on - strand, within ABIE40_RS29635 at 623.357 kb on - strand, within ABIE40_RS29635 at 623.605 kb on - strand, within ABIE40_RS29635 at 623.996 kb on - strand, within ABIE40_RS29635 at 624.014 kb on + strand, within ABIE40_RS29635 at 624.015 kb on - strand, within ABIE40_RS29635 at 624.017 kb on + strand, within ABIE40_RS29635 at 624.018 kb on - strand, within ABIE40_RS29635 at 624.018 kb on - strand, within ABIE40_RS29635 at 624.018 kb on - strand, within ABIE40_RS29635 at 624.018 kb on - strand, within ABIE40_RS29635 at 624.041 kb on - strand, within ABIE40_RS29635 at 624.090 kb on - strand, within ABIE40_RS29635 at 624.185 kb on - strand, within ABIE40_RS29635 at 624.278 kb on + strand, within ABIE40_RS29635 at 624.319 kb on + strand, within ABIE40_RS29635 at 624.320 kb on - strand, within ABIE40_RS29635 at 624.374 kb on + strand, within ABIE40_RS29635 at 624.374 kb on + strand, within ABIE40_RS29635 at 624.374 kb on + strand, within ABIE40_RS29635 at 624.375 kb on - strand, within ABIE40_RS29635 at 624.398 kb on + strand, within ABIE40_RS29635 at 624.398 kb on + strand, within ABIE40_RS29635 at 624.399 kb on - strand, within ABIE40_RS29635 at 624.400 kb on + strand, within ABIE40_RS29635 at 624.401 kb on - strand, within ABIE40_RS29635 at 624.659 kb on + strand at 624.659 kb on + strand at 624.660 kb on - strand at 624.660 kb on - strand at 624.887 kb on + strand at 624.887 kb on + strand at 624.888 kb on - strand at 625.112 kb on + strand, within ABIE40_RS29640 at 625.112 kb on + strand, within ABIE40_RS29640 at 625.407 kb on - strand, within ABIE40_RS29640 at 625.563 kb on - strand, within ABIE40_RS29640 at 625.563 kb on - strand, within ABIE40_RS29640 at 625.642 kb on - strand, within ABIE40_RS29640 at 625.766 kb on + strand, within ABIE40_RS29640 at 625.766 kb on + strand, within ABIE40_RS29640 at 625.766 kb on + strand, within ABIE40_RS29640 at 625.766 kb on + strand, within ABIE40_RS29640 at 625.766 kb on + strand, within ABIE40_RS29640 at 625.766 kb on + strand, within ABIE40_RS29640 at 625.766 kb on + strand, within ABIE40_RS29640
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 622,184 + +0.7 622,184 + -1.8 622,185 - +0.8 622,185 - -1.2 622,185 - +1.7 622,342 + ABIE40_RS29630 0.12 -2.5 622,402 + ABIE40_RS29630 0.19 +1.7 622,402 + ABIE40_RS29630 0.19 +1.2 622,402 + ABIE40_RS29630 0.19 +0.2 622,403 - ABIE40_RS29630 0.19 -1.3 622,403 - ABIE40_RS29630 0.19 +0.1 622,403 - ABIE40_RS29630 0.19 +1.7 622,405 - ABIE40_RS29630 0.19 +0.7 622,407 + ABIE40_RS29630 0.19 +0.3 622,507 + ABIE40_RS29630 0.30 -1.2 622,783 + ABIE40_RS29630 0.61 -0.9 622,786 + ABIE40_RS29630 0.61 -0.9 622,885 + ABIE40_RS29630 0.72 -1.7 622,903 + ABIE40_RS29630 0.74 -0.9 622,951 + ABIE40_RS29630 0.79 +0.7 622,951 + ABIE40_RS29630 0.79 -1.2 622,953 + ABIE40_RS29630 0.79 +0.8 622,953 + ABIE40_RS29630 0.79 -0.9 622,954 - ABIE40_RS29630 0.80 -1.2 622,954 - ABIE40_RS29630 0.80 -0.7 622,954 - ABIE40_RS29630 0.80 +0.7 623,004 - ABIE40_RS29630 0.85 +1.7 623,004 - ABIE40_RS29630 0.85 +1.3 623,107 - +1.7 623,140 + -1.1 623,141 - +0.7 623,141 - +0.3 623,141 - +0.2 623,141 - -0.9 623,147 + +0.3 623,147 + +0.2 623,148 - -0.3 623,148 - -2.5 623,148 - +0.5 623,205 - +0.8 623,205 - +1.7 623,206 + -1.3 623,348 + ABIE40_RS29635 0.13 +0.1 623,348 + ABIE40_RS29635 0.13 +1.0 623,349 - ABIE40_RS29635 0.13 +0.7 623,357 - ABIE40_RS29635 0.13 -0.2 623,357 - ABIE40_RS29635 0.13 -0.4 623,605 - ABIE40_RS29635 0.28 +1.9 623,996 - ABIE40_RS29635 0.51 +0.0 624,014 + ABIE40_RS29635 0.52 +0.7 624,015 - ABIE40_RS29635 0.52 -1.9 624,017 + ABIE40_RS29635 0.52 -1.0 624,018 - ABIE40_RS29635 0.52 -2.7 624,018 - ABIE40_RS29635 0.52 -1.2 624,018 - ABIE40_RS29635 0.52 +0.7 624,018 - ABIE40_RS29635 0.52 -0.9 624,041 - ABIE40_RS29635 0.54 +0.7 624,090 - ABIE40_RS29635 0.57 +0.9 624,185 - ABIE40_RS29635 0.62 +0.1 624,278 + ABIE40_RS29635 0.68 -0.2 624,319 + ABIE40_RS29635 0.70 -0.7 624,320 - ABIE40_RS29635 0.70 -1.8 624,374 + ABIE40_RS29635 0.73 -1.4 624,374 + ABIE40_RS29635 0.73 +1.9 624,374 + ABIE40_RS29635 0.73 -1.6 624,375 - ABIE40_RS29635 0.73 -0.5 624,398 + ABIE40_RS29635 0.75 +0.1 624,398 + ABIE40_RS29635 0.75 +1.8 624,399 - ABIE40_RS29635 0.75 +0.1 624,400 + ABIE40_RS29635 0.75 +1.7 624,401 - ABIE40_RS29635 0.75 +2.0 624,659 + +0.5 624,659 + -0.7 624,660 - -1.8 624,660 - +0.8 624,887 + +0.8 624,887 + -0.7 624,888 - +0.8 625,112 + ABIE40_RS29640 0.20 +0.4 625,112 + ABIE40_RS29640 0.20 -0.1 625,407 - ABIE40_RS29640 0.42 +0.7 625,563 - ABIE40_RS29640 0.54 -0.6 625,563 - ABIE40_RS29640 0.54 -0.7 625,642 - ABIE40_RS29640 0.60 +0.1 625,766 + ABIE40_RS29640 0.69 -1.5 625,766 + ABIE40_RS29640 0.69 +0.4 625,766 + ABIE40_RS29640 0.69 +1.7 625,766 + ABIE40_RS29640 0.69 -0.3 625,766 + ABIE40_RS29640 0.69 +0.7 625,766 + ABIE40_RS29640 0.69 +0.7 625,766 + ABIE40_RS29640 0.69 -0.1
Or see this region's nucleotide sequence