Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29170 and ABIE40_RS29175 are separated by 2 nucleotides ABIE40_RS29175 and ABIE40_RS29180 are separated by 314 nucleotides ABIE40_RS29180 and ABIE40_RS29185 are separated by 175 nucleotides ABIE40_RS29185 and ABIE40_RS29190 are separated by 34 nucleotides
ABIE40_RS29170: ABIE40_RS29170 - type II toxin-antitoxin system RelE/ParE family toxin, at 537,314 to 537,628
_RS29170
ABIE40_RS29175: ABIE40_RS29175 - type II toxin-antitoxin system ParD family antitoxin, at 537,631 to 537,891
_RS29175
ABIE40_RS29180: ABIE40_RS29180 - FAD-dependent oxidoreductase, at 538,206 to 538,418
_RS29180
ABIE40_RS29185: ABIE40_RS29185 - hypothetical protein, at 538,594 to 538,758
_RS29185
ABIE40_RS29190: ABIE40_RS29190 - ATP-dependent DNA ligase, at 538,793 to 539,812
_RS29190
Position (kb) 538
539 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 537.609 kb on + strand at 537.609 kb on + strand at 537.610 kb on - strand at 537.610 kb on - strand at 537.621 kb on + strand at 537.632 kb on + strand at 537.632 kb on + strand at 537.633 kb on - strand at 537.633 kb on - strand at 537.825 kb on - strand, within ABIE40_RS29175 at 537.937 kb on - strand at 537.944 kb on + strand at 537.944 kb on + strand at 537.944 kb on + strand at 537.944 kb on + strand at 537.944 kb on + strand at 537.945 kb on - strand at 538.210 kb on - strand at 538.211 kb on - strand at 538.303 kb on - strand, within ABIE40_RS29180 at 538.379 kb on - strand, within ABIE40_RS29180 at 538.422 kb on - strand at 538.430 kb on + strand at 538.430 kb on + strand at 538.431 kb on - strand at 538.431 kb on - strand at 538.431 kb on - strand at 538.553 kb on + strand at 538.553 kb on + strand at 538.639 kb on - strand, within ABIE40_RS29185 at 538.639 kb on - strand, within ABIE40_RS29185 at 538.699 kb on - strand, within ABIE40_RS29185 at 538.699 kb on - strand, within ABIE40_RS29185 at 538.699 kb on - strand, within ABIE40_RS29185 at 538.756 kb on + strand at 538.757 kb on - strand at 538.757 kb on - strand at 538.807 kb on + strand at 538.807 kb on + strand at 538.807 kb on + strand at 538.808 kb on - strand at 538.808 kb on - strand at 538.808 kb on - strand at 538.808 kb on - strand at 538.810 kb on + strand at 538.810 kb on + strand at 538.811 kb on - strand at 538.811 kb on - strand at 538.811 kb on - strand at 538.811 kb on - strand at 538.811 kb on - strand at 538.811 kb on - strand at 538.870 kb on + strand at 538.870 kb on + strand at 538.870 kb on + strand at 538.871 kb on - strand at 538.871 kb on - strand at 538.871 kb on - strand at 538.871 kb on - strand at 538.898 kb on + strand, within ABIE40_RS29190 at 538.899 kb on - strand, within ABIE40_RS29190 at 538.941 kb on - strand, within ABIE40_RS29190 at 538.941 kb on - strand, within ABIE40_RS29190 at 538.945 kb on + strand, within ABIE40_RS29190 at 538.955 kb on + strand, within ABIE40_RS29190 at 539.013 kb on - strand, within ABIE40_RS29190 at 539.020 kb on + strand, within ABIE40_RS29190 at 539.020 kb on + strand, within ABIE40_RS29190 at 539.020 kb on + strand, within ABIE40_RS29190 at 539.020 kb on + strand, within ABIE40_RS29190 at 539.020 kb on + strand, within ABIE40_RS29190 at 539.021 kb on - strand, within ABIE40_RS29190 at 539.021 kb on - strand, within ABIE40_RS29190 at 539.109 kb on + strand, within ABIE40_RS29190 at 539.110 kb on - strand, within ABIE40_RS29190 at 539.120 kb on + strand, within ABIE40_RS29190 at 539.361 kb on + strand, within ABIE40_RS29190 at 539.361 kb on + strand, within ABIE40_RS29190 at 539.362 kb on - strand, within ABIE40_RS29190 at 539.365 kb on + strand, within ABIE40_RS29190 at 539.366 kb on - strand, within ABIE40_RS29190 at 539.366 kb on - strand, within ABIE40_RS29190 at 539.366 kb on - strand, within ABIE40_RS29190 at 539.366 kb on - strand, within ABIE40_RS29190 at 539.366 kb on - strand, within ABIE40_RS29190 at 539.366 kb on - strand, within ABIE40_RS29190 at 539.384 kb on + strand, within ABIE40_RS29190 at 539.384 kb on + strand, within ABIE40_RS29190 at 539.384 kb on + strand, within ABIE40_RS29190 at 539.384 kb on + strand, within ABIE40_RS29190 at 539.384 kb on + strand, within ABIE40_RS29190 at 539.384 kb on + strand, within ABIE40_RS29190 at 539.384 kb on + strand, within ABIE40_RS29190 at 539.384 kb on + strand, within ABIE40_RS29190 at 539.384 kb on + strand, within ABIE40_RS29190 at 539.384 kb on + strand, within ABIE40_RS29190 at 539.384 kb on + strand, within ABIE40_RS29190 at 539.385 kb on - strand, within ABIE40_RS29190 at 539.385 kb on - strand, within ABIE40_RS29190 at 539.385 kb on - strand, within ABIE40_RS29190 at 539.385 kb on - strand, within ABIE40_RS29190 at 539.385 kb on - strand, within ABIE40_RS29190 at 539.385 kb on - strand, within ABIE40_RS29190 at 539.385 kb on - strand, within ABIE40_RS29190 at 539.504 kb on + strand, within ABIE40_RS29190 at 539.504 kb on + strand, within ABIE40_RS29190 at 539.504 kb on + strand, within ABIE40_RS29190 at 539.505 kb on - strand, within ABIE40_RS29190 at 539.505 kb on - strand, within ABIE40_RS29190 at 539.505 kb on - strand, within ABIE40_RS29190 at 539.595 kb on + strand, within ABIE40_RS29190 at 539.614 kb on + strand, within ABIE40_RS29190 at 539.677 kb on + strand, within ABIE40_RS29190 at 539.677 kb on + strand, within ABIE40_RS29190 at 539.677 kb on + strand, within ABIE40_RS29190 at 539.677 kb on + strand, within ABIE40_RS29190 at 539.677 kb on + strand, within ABIE40_RS29190 at 539.677 kb on + strand, within ABIE40_RS29190 at 539.677 kb on + strand, within ABIE40_RS29190 at 539.678 kb on - strand, within ABIE40_RS29190 at 539.678 kb on - strand, within ABIE40_RS29190 at 539.678 kb on - strand, within ABIE40_RS29190 at 539.692 kb on + strand, within ABIE40_RS29190 at 539.692 kb on + strand, within ABIE40_RS29190 at 539.693 kb on - strand, within ABIE40_RS29190 at 539.743 kb on + strand at 539.743 kb on + strand at 539.743 kb on + strand at 539.744 kb on - strand at 539.744 kb on - strand at 539.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 537,609 + -0.8 537,609 + -2.1 537,610 - -0.3 537,610 - -1.9 537,621 + -0.7 537,632 + -1.6 537,632 + +1.6 537,633 - -0.9 537,633 - -2.0 537,825 - ABIE40_RS29175 0.74 +0.6 537,937 - -0.1 537,944 + +0.7 537,944 + -0.7 537,944 + +0.6 537,944 + -0.7 537,944 + -2.5 537,945 - +1.6 538,210 - +0.5 538,211 - -1.4 538,303 - ABIE40_RS29180 0.46 -0.7 538,379 - ABIE40_RS29180 0.81 -1.2 538,422 - +0.0 538,430 + +0.5 538,430 + -0.2 538,431 - -2.0 538,431 - -0.7 538,431 - -1.7 538,553 + -1.3 538,553 + -0.2 538,639 - ABIE40_RS29185 0.27 +0.1 538,639 - ABIE40_RS29185 0.27 -0.5 538,699 - ABIE40_RS29185 0.64 -1.3 538,699 - ABIE40_RS29185 0.64 -2.5 538,699 - ABIE40_RS29185 0.64 -2.1 538,756 + -0.3 538,757 - +1.1 538,757 - -0.7 538,807 + +1.0 538,807 + -2.5 538,807 + -1.9 538,808 - +2.2 538,808 - +1.2 538,808 - +0.6 538,808 - +0.2 538,810 + -0.7 538,810 + -0.6 538,811 - -1.0 538,811 - +2.2 538,811 - -0.1 538,811 - -2.0 538,811 - +0.6 538,811 - +1.6 538,870 + -0.2 538,870 + -3.9 538,870 + +1.6 538,871 - -0.9 538,871 - -1.4 538,871 - +1.1 538,871 - +0.0 538,898 + ABIE40_RS29190 0.10 -1.3 538,899 - ABIE40_RS29190 0.10 +0.6 538,941 - ABIE40_RS29190 0.15 +0.9 538,941 - ABIE40_RS29190 0.15 -1.0 538,945 + ABIE40_RS29190 0.15 -0.1 538,955 + ABIE40_RS29190 0.16 -1.8 539,013 - ABIE40_RS29190 0.22 +1.4 539,020 + ABIE40_RS29190 0.22 +0.8 539,020 + ABIE40_RS29190 0.22 +0.7 539,020 + ABIE40_RS29190 0.22 -1.0 539,020 + ABIE40_RS29190 0.22 +0.5 539,020 + ABIE40_RS29190 0.22 -0.9 539,021 - ABIE40_RS29190 0.22 -1.2 539,021 - ABIE40_RS29190 0.22 -1.4 539,109 + ABIE40_RS29190 0.31 +0.1 539,110 - ABIE40_RS29190 0.31 -0.6 539,120 + ABIE40_RS29190 0.32 +1.6 539,361 + ABIE40_RS29190 0.56 -1.1 539,361 + ABIE40_RS29190 0.56 -0.8 539,362 - ABIE40_RS29190 0.56 -1.0 539,365 + ABIE40_RS29190 0.56 -0.3 539,366 - ABIE40_RS29190 0.56 -1.0 539,366 - ABIE40_RS29190 0.56 +0.1 539,366 - ABIE40_RS29190 0.56 -2.2 539,366 - ABIE40_RS29190 0.56 -1.4 539,366 - ABIE40_RS29190 0.56 +0.6 539,366 - ABIE40_RS29190 0.56 -1.5 539,384 + ABIE40_RS29190 0.58 -0.9 539,384 + ABIE40_RS29190 0.58 -3.5 539,384 + ABIE40_RS29190 0.58 +0.6 539,384 + ABIE40_RS29190 0.58 +0.3 539,384 + ABIE40_RS29190 0.58 -1.4 539,384 + ABIE40_RS29190 0.58 +0.5 539,384 + ABIE40_RS29190 0.58 +0.0 539,384 + ABIE40_RS29190 0.58 +0.3 539,384 + ABIE40_RS29190 0.58 +0.3 539,384 + ABIE40_RS29190 0.58 +0.1 539,384 + ABIE40_RS29190 0.58 -0.4 539,385 - ABIE40_RS29190 0.58 -1.0 539,385 - ABIE40_RS29190 0.58 -0.4 539,385 - ABIE40_RS29190 0.58 -0.9 539,385 - ABIE40_RS29190 0.58 -0.6 539,385 - ABIE40_RS29190 0.58 -1.1 539,385 - ABIE40_RS29190 0.58 -1.0 539,385 - ABIE40_RS29190 0.58 -0.7 539,504 + ABIE40_RS29190 0.70 -0.3 539,504 + ABIE40_RS29190 0.70 +0.8 539,504 + ABIE40_RS29190 0.70 -0.1 539,505 - ABIE40_RS29190 0.70 +2.0 539,505 - ABIE40_RS29190 0.70 -0.1 539,505 - ABIE40_RS29190 0.70 +0.0 539,595 + ABIE40_RS29190 0.79 -0.4 539,614 + ABIE40_RS29190 0.80 +0.4 539,677 + ABIE40_RS29190 0.87 +0.4 539,677 + ABIE40_RS29190 0.87 +0.6 539,677 + ABIE40_RS29190 0.87 +0.0 539,677 + ABIE40_RS29190 0.87 -1.0 539,677 + ABIE40_RS29190 0.87 +2.0 539,677 + ABIE40_RS29190 0.87 +0.2 539,677 + ABIE40_RS29190 0.87 +0.4 539,678 - ABIE40_RS29190 0.87 -0.5 539,678 - ABIE40_RS29190 0.87 -0.1 539,678 - ABIE40_RS29190 0.87 +1.1 539,692 + ABIE40_RS29190 0.88 +1.6 539,692 + ABIE40_RS29190 0.88 +1.6 539,693 - ABIE40_RS29190 0.88 -2.2 539,743 + +1.6 539,743 + +2.6 539,743 + +0.0 539,744 - -1.4 539,744 - -0.1 539,744 - +1.6
Or see this region's nucleotide sequence