Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28955 and ABIE40_RS28960 are separated by 75 nucleotides ABIE40_RS28960 and ABIE40_RS28965 are separated by 170 nucleotides ABIE40_RS28965 and ABIE40_RS28970 are separated by 171 nucleotides ABIE40_RS28970 and ABIE40_RS28975 are separated by 194 nucleotides
ABIE40_RS28955: ABIE40_RS28955 - hypothetical protein, at 489,997 to 490,513
_RS28955
ABIE40_RS28960: ABIE40_RS28960 - hypothetical protein, at 490,589 to 491,074
_RS28960
ABIE40_RS28965: ABIE40_RS28965 - hypothetical protein, at 491,245 to 491,457
_RS28965
ABIE40_RS28970: ABIE40_RS28970 - cold-shock protein, at 491,629 to 491,838
_RS28970
ABIE40_RS28975: ABIE40_RS28975 - transglutaminase family protein, at 492,033 to 492,902
_RS28975
Position (kb) 491
492 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 490.316 kb on + strand, within ABIE40_RS28955 at 490.475 kb on + strand at 490.479 kb on - strand at 490.479 kb on - strand at 490.479 kb on - strand at 490.479 kb on - strand at 490.545 kb on + strand at 490.545 kb on + strand at 490.545 kb on + strand at 490.545 kb on + strand at 490.545 kb on + strand at 490.545 kb on + strand at 490.546 kb on - strand at 490.546 kb on - strand at 490.591 kb on - strand at 490.607 kb on + strand at 490.617 kb on - strand at 490.639 kb on + strand, within ABIE40_RS28960 at 490.749 kb on - strand, within ABIE40_RS28960 at 490.820 kb on - strand, within ABIE40_RS28960 at 490.917 kb on + strand, within ABIE40_RS28960 at 490.917 kb on + strand, within ABIE40_RS28960 at 490.918 kb on - strand, within ABIE40_RS28960 at 491.016 kb on + strand, within ABIE40_RS28960 at 491.017 kb on - strand, within ABIE40_RS28960 at 491.038 kb on + strand at 491.038 kb on + strand at 491.038 kb on + strand at 491.038 kb on + strand at 491.038 kb on + strand at 491.038 kb on + strand at 491.038 kb on + strand at 491.039 kb on - strand at 491.039 kb on - strand at 491.041 kb on - strand at 491.067 kb on - strand at 491.123 kb on - strand at 491.166 kb on - strand at 491.172 kb on + strand at 491.173 kb on - strand at 491.173 kb on - strand at 491.187 kb on + strand at 491.187 kb on + strand at 491.203 kb on + strand at 491.235 kb on + strand at 491.236 kb on - strand at 491.236 kb on - strand at 491.441 kb on - strand at 491.441 kb on - strand at 491.441 kb on - strand at 491.463 kb on + strand at 491.464 kb on - strand at 491.464 kb on - strand at 491.464 kb on - strand at 491.481 kb on + strand at 491.482 kb on - strand at 491.598 kb on + strand at 491.598 kb on + strand at 491.598 kb on + strand at 491.598 kb on + strand at 491.598 kb on + strand at 491.598 kb on + strand at 491.598 kb on + strand at 491.631 kb on - strand at 491.690 kb on + strand, within ABIE40_RS28970 at 491.691 kb on - strand, within ABIE40_RS28970 at 491.691 kb on - strand, within ABIE40_RS28970 at 491.691 kb on - strand, within ABIE40_RS28970 at 491.691 kb on - strand, within ABIE40_RS28970 at 491.691 kb on - strand, within ABIE40_RS28970 at 491.691 kb on - strand, within ABIE40_RS28970 at 491.695 kb on + strand, within ABIE40_RS28970 at 491.696 kb on - strand, within ABIE40_RS28970 at 491.696 kb on - strand, within ABIE40_RS28970 at 491.770 kb on - strand, within ABIE40_RS28970 at 491.821 kb on + strand at 491.822 kb on - strand at 491.822 kb on - strand at 491.891 kb on - strand at 492.125 kb on + strand, within ABIE40_RS28975 at 492.283 kb on + strand, within ABIE40_RS28975 at 492.283 kb on + strand, within ABIE40_RS28975 at 492.283 kb on + strand, within ABIE40_RS28975 at 492.283 kb on + strand, within ABIE40_RS28975 at 492.283 kb on + strand, within ABIE40_RS28975 at 492.283 kb on + strand, within ABIE40_RS28975 at 492.283 kb on + strand, within ABIE40_RS28975 at 492.284 kb on - strand, within ABIE40_RS28975 at 492.284 kb on - strand, within ABIE40_RS28975 at 492.284 kb on - strand, within ABIE40_RS28975 at 492.289 kb on + strand, within ABIE40_RS28975 at 492.413 kb on + strand, within ABIE40_RS28975 at 492.414 kb on - strand, within ABIE40_RS28975 at 492.414 kb on - strand, within ABIE40_RS28975 at 492.427 kb on + strand, within ABIE40_RS28975 at 492.428 kb on - strand, within ABIE40_RS28975 at 492.452 kb on + strand, within ABIE40_RS28975
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 490,316 + ABIE40_RS28955 0.62 +0.4 490,475 + -2.7 490,479 - -1.3 490,479 - +0.1 490,479 - -0.7 490,479 - -1.2 490,545 + +1.6 490,545 + +1.1 490,545 + +0.1 490,545 + -1.7 490,545 + -0.8 490,545 + +3.2 490,546 - +1.4 490,546 - -1.1 490,591 - +4.2 490,607 + +1.6 490,617 - -1.2 490,639 + ABIE40_RS28960 0.10 +0.1 490,749 - ABIE40_RS28960 0.33 -2.2 490,820 - ABIE40_RS28960 0.48 -0.1 490,917 + ABIE40_RS28960 0.67 -1.2 490,917 + ABIE40_RS28960 0.67 -0.6 490,918 - ABIE40_RS28960 0.68 -0.5 491,016 + ABIE40_RS28960 0.88 +0.3 491,017 - ABIE40_RS28960 0.88 +0.6 491,038 + -1.4 491,038 + +0.6 491,038 + +0.6 491,038 + +0.6 491,038 + +0.2 491,038 + +1.6 491,038 + +0.1 491,039 - +1.2 491,039 - -1.1 491,041 - -1.0 491,067 - +1.1 491,123 - -0.8 491,166 - -1.2 491,172 + +0.2 491,173 - +2.2 491,173 - +0.2 491,187 + +1.6 491,187 + -0.9 491,203 + -0.1 491,235 + -0.5 491,236 - -2.7 491,236 - +0.6 491,441 - +1.1 491,441 - -0.4 491,441 - +3.4 491,463 + -1.3 491,464 - +0.4 491,464 - -0.5 491,464 - -0.8 491,481 + -1.5 491,482 - +0.1 491,598 + +0.5 491,598 + +1.2 491,598 + -0.5 491,598 + -1.2 491,598 + +1.1 491,598 + -1.1 491,598 + +0.8 491,631 - +0.9 491,690 + ABIE40_RS28970 0.29 -1.5 491,691 - ABIE40_RS28970 0.30 +1.8 491,691 - ABIE40_RS28970 0.30 +1.0 491,691 - ABIE40_RS28970 0.30 +1.6 491,691 - ABIE40_RS28970 0.30 +1.6 491,691 - ABIE40_RS28970 0.30 +0.8 491,691 - ABIE40_RS28970 0.30 -0.5 491,695 + ABIE40_RS28970 0.31 -0.1 491,696 - ABIE40_RS28970 0.32 +1.1 491,696 - ABIE40_RS28970 0.32 -0.4 491,770 - ABIE40_RS28970 0.67 +0.1 491,821 + -0.4 491,822 - +0.6 491,822 - +0.6 491,891 - +1.1 492,125 + ABIE40_RS28975 0.11 -0.2 492,283 + ABIE40_RS28975 0.29 -1.1 492,283 + ABIE40_RS28975 0.29 +1.2 492,283 + ABIE40_RS28975 0.29 -0.3 492,283 + ABIE40_RS28975 0.29 +0.1 492,283 + ABIE40_RS28975 0.29 +1.3 492,283 + ABIE40_RS28975 0.29 +1.6 492,283 + ABIE40_RS28975 0.29 +1.8 492,284 - ABIE40_RS28975 0.29 +0.9 492,284 - ABIE40_RS28975 0.29 +3.6 492,284 - ABIE40_RS28975 0.29 +0.4 492,289 + ABIE40_RS28975 0.29 -0.0 492,413 + ABIE40_RS28975 0.44 +1.0 492,414 - ABIE40_RS28975 0.44 +0.5 492,414 - ABIE40_RS28975 0.44 +3.1 492,427 + ABIE40_RS28975 0.45 +1.6 492,428 - ABIE40_RS28975 0.45 +1.3 492,452 + ABIE40_RS28975 0.48 +0.2
Or see this region's nucleotide sequence