Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28375 and ABIE40_RS28380 are separated by 72 nucleotides ABIE40_RS28380 and ABIE40_RS28385 are separated by 23 nucleotides ABIE40_RS28385 and ABIE40_RS28390 are separated by 104 nucleotides ABIE40_RS28390 and ABIE40_RS28395 are separated by 351 nucleotides
ABIE40_RS28375: ABIE40_RS28375 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 377,868 to 380,303
_RS28375
ABIE40_RS28380: ABIE40_RS28380 - SDR family oxidoreductase, at 380,376 to 381,234
_RS28380
ABIE40_RS28385: ABIE40_RS28385 - MgtC/SapB family protein, at 381,258 to 381,959
_RS28385
ABIE40_RS28390: ABIE40_RS28390 - thiamine pyrophosphate-dependent enzyme, at 382,064 to 382,341
_RS28390
ABIE40_RS28395: ABIE40_RS28395 - low affinity iron permease family protein, at 382,693 to 383,103
_RS28395
Position (kb) 381
382 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 380.347 kb on + strand at 380.347 kb on + strand at 380.347 kb on + strand at 380.347 kb on + strand at 380.348 kb on - strand at 380.348 kb on - strand at 380.475 kb on + strand, within ABIE40_RS28380 at 380.475 kb on + strand, within ABIE40_RS28380 at 380.475 kb on + strand, within ABIE40_RS28380 at 380.475 kb on + strand, within ABIE40_RS28380 at 380.475 kb on + strand, within ABIE40_RS28380 at 380.476 kb on - strand, within ABIE40_RS28380 at 380.476 kb on - strand, within ABIE40_RS28380 at 380.477 kb on + strand, within ABIE40_RS28380 at 380.496 kb on - strand, within ABIE40_RS28380 at 380.560 kb on + strand, within ABIE40_RS28380 at 380.561 kb on - strand, within ABIE40_RS28380 at 380.594 kb on - strand, within ABIE40_RS28380 at 380.947 kb on + strand, within ABIE40_RS28380 at 380.947 kb on + strand, within ABIE40_RS28380 at 380.947 kb on + strand, within ABIE40_RS28380 at 380.947 kb on + strand, within ABIE40_RS28380 at 380.979 kb on + strand, within ABIE40_RS28380 at 381.154 kb on + strand at 381.154 kb on + strand at 381.154 kb on + strand at 381.154 kb on + strand at 381.154 kb on + strand at 381.154 kb on + strand at 381.154 kb on + strand at 381.155 kb on - strand at 381.155 kb on - strand at 381.155 kb on - strand at 381.155 kb on - strand at 381.155 kb on - strand at 381.158 kb on + strand at 381.158 kb on + strand at 381.158 kb on + strand at 381.159 kb on - strand at 381.159 kb on - strand at 381.159 kb on - strand at 381.159 kb on - strand at 381.159 kb on - strand at 381.159 kb on - strand at 381.159 kb on - strand at 381.184 kb on + strand at 381.184 kb on + strand at 381.232 kb on + strand at 381.233 kb on - strand at 381.233 kb on - strand at 381.246 kb on + strand at 381.247 kb on - strand at 381.497 kb on - strand, within ABIE40_RS28385 at 381.638 kb on - strand, within ABIE40_RS28385 at 381.723 kb on - strand, within ABIE40_RS28385 at 381.842 kb on + strand, within ABIE40_RS28385 at 381.842 kb on + strand, within ABIE40_RS28385 at 381.843 kb on - strand, within ABIE40_RS28385 at 381.958 kb on - strand at 382.063 kb on - strand at 382.063 kb on - strand at 382.063 kb on - strand at 382.165 kb on + strand, within ABIE40_RS28390 at 382.222 kb on - strand, within ABIE40_RS28390 at 382.222 kb on - strand, within ABIE40_RS28390 at 382.259 kb on - strand, within ABIE40_RS28390 at 382.259 kb on - strand, within ABIE40_RS28390 at 382.259 kb on - strand, within ABIE40_RS28390 at 382.294 kb on - strand, within ABIE40_RS28390 at 382.294 kb on - strand, within ABIE40_RS28390 at 382.313 kb on + strand, within ABIE40_RS28390 at 382.404 kb on - strand at 382.409 kb on + strand at 382.409 kb on + strand at 382.410 kb on - strand at 382.410 kb on - strand at 382.410 kb on - strand at 382.469 kb on + strand at 382.470 kb on - strand at 382.562 kb on - strand at 382.591 kb on + strand at 382.593 kb on + strand at 382.593 kb on + strand at 382.594 kb on - strand at 382.599 kb on + strand at 382.638 kb on - strand at 382.855 kb on + strand, within ABIE40_RS28395 at 382.855 kb on + strand, within ABIE40_RS28395 at 382.856 kb on - strand, within ABIE40_RS28395
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 380,347 + +0.3 380,347 + +0.7 380,347 + +1.7 380,347 + -3.1 380,348 - +1.7 380,348 - +1.4 380,475 + ABIE40_RS28380 0.12 +0.1 380,475 + ABIE40_RS28380 0.12 -0.3 380,475 + ABIE40_RS28380 0.12 +1.7 380,475 + ABIE40_RS28380 0.12 +1.9 380,475 + ABIE40_RS28380 0.12 +2.0 380,476 - ABIE40_RS28380 0.12 -2.0 380,476 - ABIE40_RS28380 0.12 -0.6 380,477 + ABIE40_RS28380 0.12 -1.9 380,496 - ABIE40_RS28380 0.14 -1.8 380,560 + ABIE40_RS28380 0.21 -4.2 380,561 - ABIE40_RS28380 0.22 -1.1 380,594 - ABIE40_RS28380 0.25 -0.9 380,947 + ABIE40_RS28380 0.66 +0.1 380,947 + ABIE40_RS28380 0.66 +0.2 380,947 + ABIE40_RS28380 0.66 +2.0 380,947 + ABIE40_RS28380 0.66 +0.8 380,979 + ABIE40_RS28380 0.70 +1.4 381,154 + -0.0 381,154 + -0.8 381,154 + +4.7 381,154 + +0.7 381,154 + +0.4 381,154 + -0.9 381,154 + -0.5 381,155 - -0.0 381,155 - -0.5 381,155 - -1.4 381,155 - -1.9 381,155 - -0.6 381,158 + +1.1 381,158 + -0.2 381,158 + +1.2 381,159 - -1.1 381,159 - +1.7 381,159 - -1.3 381,159 - -0.5 381,159 - -0.2 381,159 - -0.5 381,159 - +0.6 381,184 + +0.1 381,184 + -0.7 381,232 + +1.5 381,233 - +1.7 381,233 - +0.7 381,246 + +0.6 381,247 - +0.1 381,497 - ABIE40_RS28385 0.34 +1.1 381,638 - ABIE40_RS28385 0.54 -2.0 381,723 - ABIE40_RS28385 0.66 +0.7 381,842 + ABIE40_RS28385 0.83 -0.3 381,842 + ABIE40_RS28385 0.83 -2.0 381,843 - ABIE40_RS28385 0.83 +0.1 381,958 - -0.8 382,063 - -0.6 382,063 - -0.3 382,063 - +0.7 382,165 + ABIE40_RS28390 0.36 -0.3 382,222 - ABIE40_RS28390 0.57 +0.7 382,222 - ABIE40_RS28390 0.57 -0.9 382,259 - ABIE40_RS28390 0.70 -2.0 382,259 - ABIE40_RS28390 0.70 +2.7 382,259 - ABIE40_RS28390 0.70 -0.1 382,294 - ABIE40_RS28390 0.83 -1.5 382,294 - ABIE40_RS28390 0.83 +1.7 382,313 + ABIE40_RS28390 0.90 +1.4 382,404 - +1.7 382,409 + +0.1 382,409 + +0.1 382,410 - -0.6 382,410 - +2.7 382,410 - +1.6 382,469 + +4.9 382,470 - -0.9 382,562 - +0.2 382,591 + +0.1 382,593 + +1.7 382,593 + +0.7 382,594 - -0.5 382,599 + -1.9 382,638 - -0.2 382,855 + ABIE40_RS28395 0.39 +0.9 382,855 + ABIE40_RS28395 0.39 -2.0 382,856 - ABIE40_RS28395 0.40 -1.1
Or see this region's nucleotide sequence