Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28300 and ABIE40_RS28305 are separated by 279 nucleotides ABIE40_RS28305 and ABIE40_RS28310 are separated by 139 nucleotides ABIE40_RS28310 and ABIE40_RS28315 are separated by 225 nucleotides
ABIE40_RS28300: ABIE40_RS28300 - ester cyclase, at 364,633 to 364,896
_RS28300
ABIE40_RS28305: ABIE40_RS28305 - TetR/AcrR family transcriptional regulator, at 365,176 to 365,754
_RS28305
ABIE40_RS28310: ABIE40_RS28310 - DoxX family protein, at 365,894 to 366,241
_RS28310
ABIE40_RS28315: ABIE40_RS28315 - PAS domain-containing protein, at 366,467 to 367,516
_RS28315
Position (kb) 365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 364.894 kb on + strand at 364.895 kb on + strand at 364.895 kb on - strand at 364.905 kb on + strand at 364.926 kb on - strand at 364.926 kb on - strand at 364.926 kb on - strand at 364.936 kb on - strand at 364.936 kb on - strand at 364.986 kb on - strand at 364.991 kb on + strand at 364.991 kb on + strand at 364.991 kb on + strand at 364.991 kb on + strand at 364.992 kb on - strand at 365.026 kb on + strand at 365.026 kb on + strand at 365.026 kb on + strand at 365.026 kb on + strand at 365.026 kb on + strand at 365.026 kb on + strand at 365.027 kb on - strand at 365.027 kb on - strand at 365.027 kb on - strand at 365.027 kb on - strand at 365.027 kb on - strand at 365.138 kb on + strand at 365.138 kb on + strand at 365.139 kb on - strand at 365.139 kb on - strand at 365.159 kb on + strand at 365.160 kb on - strand at 365.166 kb on + strand at 365.167 kb on - strand at 365.167 kb on - strand at 365.167 kb on - strand at 365.281 kb on + strand, within ABIE40_RS28305 at 365.282 kb on - strand, within ABIE40_RS28305 at 365.371 kb on + strand, within ABIE40_RS28305 at 365.371 kb on + strand, within ABIE40_RS28305 at 365.371 kb on + strand, within ABIE40_RS28305 at 365.413 kb on + strand, within ABIE40_RS28305 at 365.432 kb on + strand, within ABIE40_RS28305 at 365.432 kb on + strand, within ABIE40_RS28305 at 365.433 kb on - strand, within ABIE40_RS28305 at 365.433 kb on - strand, within ABIE40_RS28305 at 365.487 kb on + strand, within ABIE40_RS28305 at 365.603 kb on + strand, within ABIE40_RS28305 at 365.604 kb on - strand, within ABIE40_RS28305 at 365.622 kb on - strand, within ABIE40_RS28305 at 365.622 kb on - strand, within ABIE40_RS28305 at 365.737 kb on - strand at 365.746 kb on - strand at 365.749 kb on - strand at 365.749 kb on - strand at 365.756 kb on + strand at 365.757 kb on - strand at 365.757 kb on - strand at 365.757 kb on - strand at 365.842 kb on + strand at 365.861 kb on + strand at 365.870 kb on + strand at 365.870 kb on + strand at 365.870 kb on + strand at 365.871 kb on - strand at 366.075 kb on + strand, within ABIE40_RS28310 at 366.075 kb on + strand, within ABIE40_RS28310 at 366.076 kb on - strand, within ABIE40_RS28310 at 366.076 kb on - strand, within ABIE40_RS28310 at 366.239 kb on + strand at 366.239 kb on + strand at 366.239 kb on + strand at 366.239 kb on + strand at 366.240 kb on - strand at 366.304 kb on + strand at 366.321 kb on - strand at 366.349 kb on + strand at 366.350 kb on - strand at 366.350 kb on - strand at 366.374 kb on + strand at 366.375 kb on - strand at 366.378 kb on + strand at 366.468 kb on + strand at 366.559 kb on + strand at 366.559 kb on + strand at 366.559 kb on + strand at 366.560 kb on - strand at 366.783 kb on - strand, within ABIE40_RS28315 at 366.783 kb on - strand, within ABIE40_RS28315 at 366.910 kb on + strand, within ABIE40_RS28315 at 366.910 kb on + strand, within ABIE40_RS28315 at 366.910 kb on + strand, within ABIE40_RS28315 at 366.910 kb on + strand, within ABIE40_RS28315 at 366.910 kb on + strand, within ABIE40_RS28315 at 366.911 kb on - strand, within ABIE40_RS28315 at 366.911 kb on - strand, within ABIE40_RS28315 at 367.006 kb on + strand, within ABIE40_RS28315 at 367.087 kb on - strand, within ABIE40_RS28315 at 367.116 kb on + strand, within ABIE40_RS28315 at 367.177 kb on + strand, within ABIE40_RS28315 at 367.177 kb on + strand, within ABIE40_RS28315 at 367.177 kb on + strand, within ABIE40_RS28315 at 367.177 kb on + strand, within ABIE40_RS28315 at 367.177 kb on + strand, within ABIE40_RS28315 at 367.178 kb on - strand, within ABIE40_RS28315 at 367.178 kb on - strand, within ABIE40_RS28315 at 367.195 kb on - strand, within ABIE40_RS28315 at 367.236 kb on - strand, within ABIE40_RS28315
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 364,894 + -0.8 364,895 + -0.6 364,895 - +0.7 364,905 + +0.1 364,926 - -2.3 364,926 - -0.2 364,926 - +0.4 364,936 - -1.0 364,936 - -2.4 364,986 - -1.3 364,991 + -1.1 364,991 + +3.0 364,991 + -0.3 364,991 + +1.7 364,992 - -0.7 365,026 + +0.1 365,026 + +0.4 365,026 + +0.3 365,026 + -2.0 365,026 + -1.0 365,026 + +2.0 365,027 - +0.2 365,027 - -0.7 365,027 - -0.1 365,027 - -1.6 365,027 - +1.4 365,138 + +0.5 365,138 + -0.3 365,139 - +0.4 365,139 - +1.7 365,159 + +1.7 365,160 - -1.3 365,166 + +1.3 365,167 - +0.1 365,167 - -0.9 365,167 - -1.0 365,281 + ABIE40_RS28305 0.18 -0.3 365,282 - ABIE40_RS28305 0.18 +1.5 365,371 + ABIE40_RS28305 0.34 -1.3 365,371 + ABIE40_RS28305 0.34 +0.0 365,371 + ABIE40_RS28305 0.34 +0.7 365,413 + ABIE40_RS28305 0.41 -0.4 365,432 + ABIE40_RS28305 0.44 -0.3 365,432 + ABIE40_RS28305 0.44 -1.6 365,433 - ABIE40_RS28305 0.44 -0.3 365,433 - ABIE40_RS28305 0.44 +1.7 365,487 + ABIE40_RS28305 0.54 -1.9 365,603 + ABIE40_RS28305 0.74 -1.3 365,604 - ABIE40_RS28305 0.74 -2.2 365,622 - ABIE40_RS28305 0.77 +0.3 365,622 - ABIE40_RS28305 0.77 +1.2 365,737 - +1.1 365,746 - -1.3 365,749 - +0.1 365,749 - -1.1 365,756 + -0.4 365,757 - -0.9 365,757 - -1.6 365,757 - -0.2 365,842 + +2.7 365,861 + -1.3 365,870 + -1.0 365,870 + -0.8 365,870 + +0.7 365,871 - -2.2 366,075 + ABIE40_RS28310 0.52 -1.4 366,075 + ABIE40_RS28310 0.52 -1.1 366,076 - ABIE40_RS28310 0.52 -1.3 366,076 - ABIE40_RS28310 0.52 -0.5 366,239 + -2.4 366,239 + -2.9 366,239 + -0.6 366,239 + -0.5 366,240 - -0.7 366,304 + +0.4 366,321 - -0.0 366,349 + -0.3 366,350 - +0.1 366,350 - -0.9 366,374 + -1.6 366,375 - -2.2 366,378 + -1.3 366,468 + +1.9 366,559 + -0.2 366,559 + +1.9 366,559 + -0.6 366,560 - -0.1 366,783 - ABIE40_RS28315 0.30 +0.1 366,783 - ABIE40_RS28315 0.30 +0.4 366,910 + ABIE40_RS28315 0.42 +1.7 366,910 + ABIE40_RS28315 0.42 +1.7 366,910 + ABIE40_RS28315 0.42 -0.3 366,910 + ABIE40_RS28315 0.42 +2.1 366,910 + ABIE40_RS28315 0.42 -0.9 366,911 - ABIE40_RS28315 0.42 -0.3 366,911 - ABIE40_RS28315 0.42 -0.7 367,006 + ABIE40_RS28315 0.51 +0.7 367,087 - ABIE40_RS28315 0.59 -0.7 367,116 + ABIE40_RS28315 0.62 -1.1 367,177 + ABIE40_RS28315 0.68 -1.7 367,177 + ABIE40_RS28315 0.68 +0.7 367,177 + ABIE40_RS28315 0.68 -0.6 367,177 + ABIE40_RS28315 0.68 +1.7 367,177 + ABIE40_RS28315 0.68 +0.1 367,178 - ABIE40_RS28315 0.68 -1.6 367,178 - ABIE40_RS28315 0.68 -2.5 367,195 - ABIE40_RS28315 0.69 -0.6 367,236 - ABIE40_RS28315 0.73 +0.4
Or see this region's nucleotide sequence