Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27760 and ABIE40_RS27765 are separated by 375 nucleotides ABIE40_RS27765 and ABIE40_RS27770 are separated by 130 nucleotides ABIE40_RS27770 and ABIE40_RS27775 are separated by 72 nucleotides
ABIE40_RS27760: ABIE40_RS27760 - helix-turn-helix transcriptional regulator, at 264,704 to 265,099
_RS27760
ABIE40_RS27765: ABIE40_RS27765 - hypothetical protein, at 265,475 to 265,741
_RS27765
ABIE40_RS27770: ABIE40_RS27770 - hypothetical protein, at 265,872 to 266,072
_RS27770
ABIE40_RS27775: ABIE40_RS27775 - hypothetical protein, at 266,145 to 266,456
_RS27775
Position (kb) 265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 264.480 kb on - strand at 264.624 kb on + strand at 264.624 kb on + strand at 264.625 kb on - strand at 264.625 kb on - strand at 264.625 kb on - strand at 264.721 kb on + strand at 264.733 kb on + strand at 264.733 kb on + strand at 264.734 kb on - strand at 264.759 kb on + strand, within ABIE40_RS27760 at 264.760 kb on - strand, within ABIE40_RS27760 at 264.972 kb on + strand, within ABIE40_RS27760 at 264.973 kb on - strand, within ABIE40_RS27760 at 265.000 kb on + strand, within ABIE40_RS27760 at 265.000 kb on + strand, within ABIE40_RS27760 at 265.000 kb on + strand, within ABIE40_RS27760 at 265.001 kb on - strand, within ABIE40_RS27760 at 265.001 kb on - strand, within ABIE40_RS27760 at 265.133 kb on + strand at 265.133 kb on + strand at 265.133 kb on + strand at 265.133 kb on + strand at 265.134 kb on - strand at 265.207 kb on + strand at 265.225 kb on + strand at 265.226 kb on - strand at 265.226 kb on - strand at 265.237 kb on + strand at 265.237 kb on + strand at 265.309 kb on + strand at 265.309 kb on + strand at 265.310 kb on - strand at 265.418 kb on - strand at 265.418 kb on - strand at 265.435 kb on + strand at 265.436 kb on - strand at 265.619 kb on + strand, within ABIE40_RS27765 at 265.620 kb on - strand, within ABIE40_RS27765 at 265.636 kb on - strand, within ABIE40_RS27765 at 265.636 kb on - strand, within ABIE40_RS27765 at 265.779 kb on + strand at 265.779 kb on + strand at 265.779 kb on + strand at 265.779 kb on + strand at 265.779 kb on + strand at 265.779 kb on + strand at 265.779 kb on + strand at 265.779 kb on + strand at 265.779 kb on + strand at 265.779 kb on + strand at 265.779 kb on + strand at 265.779 kb on + strand at 265.780 kb on - strand at 265.780 kb on - strand at 265.780 kb on - strand at 265.780 kb on - strand at 265.780 kb on - strand at 265.781 kb on + strand at 265.781 kb on + strand at 265.782 kb on - strand at 265.782 kb on - strand at 265.782 kb on - strand at 265.782 kb on - strand at 265.782 kb on - strand at 266.007 kb on + strand, within ABIE40_RS27770 at 266.007 kb on + strand, within ABIE40_RS27770 at 266.007 kb on + strand, within ABIE40_RS27770 at 266.008 kb on - strand, within ABIE40_RS27770 at 266.008 kb on - strand, within ABIE40_RS27770 at 266.008 kb on - strand, within ABIE40_RS27770 at 266.070 kb on + strand at 266.070 kb on + strand at 266.070 kb on + strand at 266.071 kb on - strand at 266.071 kb on - strand at 266.071 kb on - strand at 266.071 kb on - strand at 266.071 kb on - strand at 266.076 kb on + strand at 266.076 kb on + strand at 266.077 kb on - strand at 266.077 kb on - strand at 266.080 kb on + strand at 266.194 kb on + strand, within ABIE40_RS27775 at 266.195 kb on - strand, within ABIE40_RS27775 at 266.195 kb on - strand, within ABIE40_RS27775 at 266.195 kb on - strand, within ABIE40_RS27775 at 266.195 kb on - strand, within ABIE40_RS27775 at 266.295 kb on + strand, within ABIE40_RS27775 at 266.296 kb on - strand, within ABIE40_RS27775 at 266.337 kb on - strand, within ABIE40_RS27775 at 266.412 kb on + strand, within ABIE40_RS27775 at 266.413 kb on - strand, within ABIE40_RS27775 at 266.446 kb on + strand at 266.515 kb on + strand at 266.532 kb on - strand at 266.532 kb on - strand at 266.581 kb on + strand at 266.582 kb on - strand at 266.582 kb on - strand at 266.582 kb on - strand at 266.651 kb on - strand at 266.686 kb on - strand at 266.686 kb on - strand at 266.740 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 264,480 - -0.3 264,624 + -1.6 264,624 + +0.5 264,625 - -1.0 264,625 - -1.6 264,625 - -0.4 264,721 + -0.8 264,733 + -0.8 264,733 + -2.6 264,734 - -1.4 264,759 + ABIE40_RS27760 0.14 -0.9 264,760 - ABIE40_RS27760 0.14 -0.2 264,972 + ABIE40_RS27760 0.68 -0.1 264,973 - ABIE40_RS27760 0.68 -1.6 265,000 + ABIE40_RS27760 0.75 +0.7 265,000 + ABIE40_RS27760 0.75 +0.7 265,000 + ABIE40_RS27760 0.75 -1.8 265,001 - ABIE40_RS27760 0.75 -1.4 265,001 - ABIE40_RS27760 0.75 -1.2 265,133 + +0.2 265,133 + -2.6 265,133 + -1.1 265,133 + +0.2 265,134 - -1.7 265,207 + -0.8 265,225 + +0.9 265,226 - -2.2 265,226 - -0.6 265,237 + +1.7 265,237 + +1.0 265,309 + -3.3 265,309 + +2.1 265,310 - -2.1 265,418 - +2.6 265,418 - +0.5 265,435 + -1.6 265,436 - -1.3 265,619 + ABIE40_RS27765 0.54 -0.7 265,620 - ABIE40_RS27765 0.54 -2.3 265,636 - ABIE40_RS27765 0.60 -0.5 265,636 - ABIE40_RS27765 0.60 -1.3 265,779 + -2.4 265,779 + +1.1 265,779 + -0.4 265,779 + -0.3 265,779 + -1.8 265,779 + -0.0 265,779 + -1.0 265,779 + +1.7 265,779 + -2.4 265,779 + -1.1 265,779 + -1.8 265,779 + +1.7 265,780 - +1.3 265,780 - -1.6 265,780 - +0.7 265,780 - -1.0 265,780 - +3.7 265,781 + -0.6 265,781 + -1.6 265,782 - +1.3 265,782 - +1.1 265,782 - +1.4 265,782 - +2.4 265,782 - -2.0 266,007 + ABIE40_RS27770 0.67 +0.9 266,007 + ABIE40_RS27770 0.67 +0.5 266,007 + ABIE40_RS27770 0.67 +0.2 266,008 - ABIE40_RS27770 0.68 -1.3 266,008 - ABIE40_RS27770 0.68 -0.3 266,008 - ABIE40_RS27770 0.68 -1.7 266,070 + -0.7 266,070 + +2.0 266,070 + -2.5 266,071 - +0.6 266,071 - +1.0 266,071 - +0.4 266,071 - -0.8 266,071 - -0.3 266,076 + +0.2 266,076 + +0.2 266,077 - +0.2 266,077 - -1.0 266,080 + +0.5 266,194 + ABIE40_RS27775 0.16 -1.3 266,195 - ABIE40_RS27775 0.16 +0.7 266,195 - ABIE40_RS27775 0.16 +0.9 266,195 - ABIE40_RS27775 0.16 +0.4 266,195 - ABIE40_RS27775 0.16 -1.6 266,295 + ABIE40_RS27775 0.48 +4.7 266,296 - ABIE40_RS27775 0.48 +0.0 266,337 - ABIE40_RS27775 0.62 -0.2 266,412 + ABIE40_RS27775 0.86 -1.7 266,413 - ABIE40_RS27775 0.86 +0.7 266,446 + -0.1 266,515 + -0.6 266,532 - +1.7 266,532 - -1.1 266,581 + -0.3 266,582 - -1.3 266,582 - -0.8 266,582 - -2.2 266,651 - -0.5 266,686 - +0.6 266,686 - +0.7 266,740 + +0.3
Or see this region's nucleotide sequence