Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27435 and ABIE40_RS27440 are separated by 21 nucleotides ABIE40_RS27440 and ABIE40_RS27445 are separated by 4 nucleotides ABIE40_RS27445 and ABIE40_RS27450 are separated by 393 nucleotides
ABIE40_RS27435: ABIE40_RS27435 - histidine kinase dimerization/phosphoacceptor domain -containing protein, at 198,155 to 199,468
_RS27435
ABIE40_RS27440: ABIE40_RS27440 - DUF4112 domain-containing protein, at 199,490 to 199,867
_RS27440
ABIE40_RS27445: ABIE40_RS27445 - response regulator, at 199,872 to 200,261
_RS27445
ABIE40_RS27450: ABIE40_RS27450 - hypothetical protein, at 200,655 to 201,569
_RS27450
Position (kb) 199
200 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 198.605 kb on + strand, within ABIE40_RS27435 at 198.605 kb on + strand, within ABIE40_RS27435 at 198.605 kb on + strand, within ABIE40_RS27435 at 198.605 kb on + strand, within ABIE40_RS27435 at 198.605 kb on + strand, within ABIE40_RS27435 at 198.606 kb on - strand, within ABIE40_RS27435 at 198.606 kb on - strand, within ABIE40_RS27435 at 198.606 kb on - strand, within ABIE40_RS27435 at 198.606 kb on - strand, within ABIE40_RS27435 at 198.606 kb on - strand, within ABIE40_RS27435 at 198.606 kb on - strand, within ABIE40_RS27435 at 198.606 kb on - strand, within ABIE40_RS27435 at 198.616 kb on + strand, within ABIE40_RS27435 at 198.623 kb on + strand, within ABIE40_RS27435 at 198.623 kb on + strand, within ABIE40_RS27435 at 198.623 kb on + strand, within ABIE40_RS27435 at 198.623 kb on + strand, within ABIE40_RS27435 at 198.623 kb on + strand, within ABIE40_RS27435 at 198.624 kb on - strand, within ABIE40_RS27435 at 198.624 kb on - strand, within ABIE40_RS27435 at 198.624 kb on - strand, within ABIE40_RS27435 at 198.624 kb on - strand, within ABIE40_RS27435 at 198.624 kb on - strand, within ABIE40_RS27435 at 198.624 kb on - strand, within ABIE40_RS27435 at 198.626 kb on - strand, within ABIE40_RS27435 at 198.626 kb on - strand, within ABIE40_RS27435 at 198.626 kb on - strand, within ABIE40_RS27435 at 198.650 kb on + strand, within ABIE40_RS27435 at 198.650 kb on + strand, within ABIE40_RS27435 at 198.650 kb on + strand, within ABIE40_RS27435 at 198.651 kb on - strand, within ABIE40_RS27435 at 198.651 kb on - strand, within ABIE40_RS27435 at 198.651 kb on - strand, within ABIE40_RS27435 at 198.651 kb on - strand, within ABIE40_RS27435 at 198.651 kb on - strand, within ABIE40_RS27435 at 198.651 kb on - strand, within ABIE40_RS27435 at 198.651 kb on - strand, within ABIE40_RS27435 at 198.654 kb on + strand, within ABIE40_RS27435 at 198.654 kb on + strand, within ABIE40_RS27435 at 198.655 kb on - strand, within ABIE40_RS27435 at 198.655 kb on - strand, within ABIE40_RS27435 at 199.018 kb on + strand, within ABIE40_RS27435 at 199.019 kb on - strand, within ABIE40_RS27435 at 199.052 kb on + strand, within ABIE40_RS27435 at 199.052 kb on + strand, within ABIE40_RS27435 at 199.052 kb on + strand, within ABIE40_RS27435 at 199.140 kb on + strand, within ABIE40_RS27435 at 199.238 kb on + strand, within ABIE40_RS27435 at 199.238 kb on + strand, within ABIE40_RS27435 at 199.239 kb on - strand, within ABIE40_RS27435 at 199.557 kb on + strand, within ABIE40_RS27440 at 199.558 kb on - strand, within ABIE40_RS27440 at 199.656 kb on - strand, within ABIE40_RS27440 at 199.935 kb on - strand, within ABIE40_RS27445 at 199.935 kb on - strand, within ABIE40_RS27445 at 199.984 kb on - strand, within ABIE40_RS27445 at 200.161 kb on + strand, within ABIE40_RS27445 at 200.161 kb on + strand, within ABIE40_RS27445 at 200.161 kb on + strand, within ABIE40_RS27445 at 200.161 kb on + strand, within ABIE40_RS27445 at 200.162 kb on - strand, within ABIE40_RS27445 at 200.162 kb on - strand, within ABIE40_RS27445 at 200.252 kb on + strand at 200.252 kb on + strand at 200.253 kb on - strand at 200.277 kb on + strand at 200.277 kb on + strand at 200.278 kb on - strand at 200.291 kb on - strand at 200.310 kb on + strand at 200.311 kb on - strand at 200.356 kb on + strand at 200.357 kb on - strand at 200.358 kb on + strand at 200.358 kb on + strand at 200.359 kb on - strand at 200.363 kb on + strand at 200.364 kb on + strand at 200.364 kb on + strand at 200.364 kb on + strand at 200.364 kb on + strand at 200.474 kb on + strand at 200.475 kb on - strand at 200.532 kb on - strand at 200.581 kb on + strand at 200.582 kb on - strand at 200.582 kb on - strand at 200.618 kb on + strand at 200.619 kb on - strand at 200.629 kb on + strand at 200.630 kb on - strand at 200.643 kb on + strand at 200.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 198,605 + ABIE40_RS27435 0.34 +2.1 198,605 + ABIE40_RS27435 0.34 +0.2 198,605 + ABIE40_RS27435 0.34 +1.7 198,605 + ABIE40_RS27435 0.34 +0.4 198,605 + ABIE40_RS27435 0.34 +1.2 198,606 - ABIE40_RS27435 0.34 -0.8 198,606 - ABIE40_RS27435 0.34 -0.1 198,606 - ABIE40_RS27435 0.34 -1.3 198,606 - ABIE40_RS27435 0.34 +0.8 198,606 - ABIE40_RS27435 0.34 -1.7 198,606 - ABIE40_RS27435 0.34 +0.7 198,606 - ABIE40_RS27435 0.34 -0.7 198,616 + ABIE40_RS27435 0.35 +1.8 198,623 + ABIE40_RS27435 0.36 +0.4 198,623 + ABIE40_RS27435 0.36 -1.3 198,623 + ABIE40_RS27435 0.36 -4.3 198,623 + ABIE40_RS27435 0.36 +1.0 198,623 + ABIE40_RS27435 0.36 -1.5 198,624 - ABIE40_RS27435 0.36 -0.5 198,624 - ABIE40_RS27435 0.36 +0.7 198,624 - ABIE40_RS27435 0.36 -0.2 198,624 - ABIE40_RS27435 0.36 +0.7 198,624 - ABIE40_RS27435 0.36 -1.9 198,624 - ABIE40_RS27435 0.36 +0.2 198,626 - ABIE40_RS27435 0.36 -1.4 198,626 - ABIE40_RS27435 0.36 +2.3 198,626 - ABIE40_RS27435 0.36 +0.7 198,650 + ABIE40_RS27435 0.38 +1.7 198,650 + ABIE40_RS27435 0.38 -0.9 198,650 + ABIE40_RS27435 0.38 -0.6 198,651 - ABIE40_RS27435 0.38 +0.7 198,651 - ABIE40_RS27435 0.38 -0.3 198,651 - ABIE40_RS27435 0.38 -0.4 198,651 - ABIE40_RS27435 0.38 -0.2 198,651 - ABIE40_RS27435 0.38 -0.3 198,651 - ABIE40_RS27435 0.38 -2.5 198,651 - ABIE40_RS27435 0.38 -1.5 198,654 + ABIE40_RS27435 0.38 -1.2 198,654 + ABIE40_RS27435 0.38 +0.8 198,655 - ABIE40_RS27435 0.38 +0.3 198,655 - ABIE40_RS27435 0.38 -2.2 199,018 + ABIE40_RS27435 0.66 -1.1 199,019 - ABIE40_RS27435 0.66 -1.4 199,052 + ABIE40_RS27435 0.68 +1.7 199,052 + ABIE40_RS27435 0.68 -0.6 199,052 + ABIE40_RS27435 0.68 -1.8 199,140 + ABIE40_RS27435 0.75 -2.4 199,238 + ABIE40_RS27435 0.82 -0.5 199,238 + ABIE40_RS27435 0.82 -1.2 199,239 - ABIE40_RS27435 0.82 +1.7 199,557 + ABIE40_RS27440 0.18 -0.3 199,558 - ABIE40_RS27440 0.18 -0.8 199,656 - ABIE40_RS27440 0.44 -2.1 199,935 - ABIE40_RS27445 0.16 -1.2 199,935 - ABIE40_RS27445 0.16 +2.3 199,984 - ABIE40_RS27445 0.29 +0.7 200,161 + ABIE40_RS27445 0.74 +0.7 200,161 + ABIE40_RS27445 0.74 +1.7 200,161 + ABIE40_RS27445 0.74 +1.1 200,161 + ABIE40_RS27445 0.74 -0.5 200,162 - ABIE40_RS27445 0.74 -2.0 200,162 - ABIE40_RS27445 0.74 +0.2 200,252 + +0.3 200,252 + +2.1 200,253 - +0.5 200,277 + -1.4 200,277 + +0.7 200,278 - -1.8 200,291 - -0.5 200,310 + +0.7 200,311 - +0.2 200,356 + -0.0 200,357 - -0.6 200,358 + -1.0 200,358 + +1.1 200,359 - -0.8 200,363 + +0.1 200,364 + -0.3 200,364 + -0.0 200,364 + -0.0 200,364 + +1.5 200,474 + -0.2 200,475 - -0.8 200,532 - +2.1 200,581 + -0.5 200,582 - +0.2 200,582 - -1.1 200,618 + -0.1 200,619 - -1.1 200,629 + -1.1 200,630 - -1.4 200,643 + -1.3 200,644 - +0.7
Or see this region's nucleotide sequence