Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27365 and ABIE40_RS27370 are separated by 19 nucleotides ABIE40_RS27370 and ABIE40_RS27375 are separated by 93 nucleotides ABIE40_RS27375 and ABIE40_RS27380 are separated by 206 nucleotides ABIE40_RS27380 and ABIE40_RS27385 overlap by 8 nucleotides ABIE40_RS27385 and ABIE40_RS27390 are separated by 342 nucleotides
ABIE40_RS27365: ABIE40_RS27365 - ATPase domain-containing protein, at 187,562 to 189,001
_RS27365
ABIE40_RS27370: ABIE40_RS27370 - response regulator, at 189,021 to 189,383
_RS27370
ABIE40_RS27375: ABIE40_RS27375 - response regulator, at 189,477 to 189,863
_RS27375
ABIE40_RS27380: ABIE40_RS27380 - hypothetical protein, at 190,070 to 190,279
_RS27380
ABIE40_RS27385: ABIE40_RS27385 - hypothetical protein, at 190,272 to 190,481
_RS27385
ABIE40_RS27390: ABIE40_RS27390 - ferritin-like domain-containing protein, at 190,824 to 191,324
_RS27390
Position (kb) 189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 188.664 kb on - strand, within ABIE40_RS27365 at 188.675 kb on - strand, within ABIE40_RS27365 at 188.725 kb on + strand, within ABIE40_RS27365 at 188.728 kb on + strand, within ABIE40_RS27365 at 188.729 kb on - strand, within ABIE40_RS27365 at 188.729 kb on - strand, within ABIE40_RS27365 at 188.729 kb on - strand, within ABIE40_RS27365 at 188.729 kb on - strand, within ABIE40_RS27365 at 188.817 kb on + strand, within ABIE40_RS27365 at 188.818 kb on - strand, within ABIE40_RS27365 at 188.833 kb on - strand, within ABIE40_RS27365 at 188.833 kb on - strand, within ABIE40_RS27365 at 188.850 kb on - strand, within ABIE40_RS27365 at 189.038 kb on - strand at 189.071 kb on + strand, within ABIE40_RS27370 at 189.071 kb on + strand, within ABIE40_RS27370 at 189.071 kb on + strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.072 kb on - strand, within ABIE40_RS27370 at 189.218 kb on + strand, within ABIE40_RS27370 at 189.219 kb on - strand, within ABIE40_RS27370 at 189.262 kb on + strand, within ABIE40_RS27370 at 189.262 kb on + strand, within ABIE40_RS27370 at 189.263 kb on - strand, within ABIE40_RS27370 at 189.263 kb on - strand, within ABIE40_RS27370 at 189.331 kb on - strand, within ABIE40_RS27370 at 189.384 kb on + strand at 189.436 kb on + strand at 189.437 kb on - strand at 189.437 kb on - strand at 189.441 kb on + strand at 189.448 kb on + strand at 189.448 kb on + strand at 189.449 kb on - strand at 189.449 kb on - strand at 189.507 kb on - strand at 189.518 kb on + strand, within ABIE40_RS27375 at 189.543 kb on + strand, within ABIE40_RS27375 at 189.543 kb on + strand, within ABIE40_RS27375 at 189.543 kb on + strand, within ABIE40_RS27375 at 189.543 kb on + strand, within ABIE40_RS27375 at 189.544 kb on - strand, within ABIE40_RS27375 at 189.637 kb on + strand, within ABIE40_RS27375 at 189.892 kb on + strand at 189.903 kb on - strand at 189.903 kb on - strand at 189.903 kb on - strand at 189.903 kb on - strand at 189.930 kb on + strand at 189.930 kb on + strand at 190.035 kb on + strand at 190.035 kb on + strand at 190.036 kb on - strand at 190.138 kb on + strand, within ABIE40_RS27380 at 190.138 kb on + strand, within ABIE40_RS27380 at 190.138 kb on + strand, within ABIE40_RS27380 at 190.139 kb on - strand, within ABIE40_RS27380 at 190.160 kb on + strand, within ABIE40_RS27380 at 190.160 kb on + strand, within ABIE40_RS27380 at 190.231 kb on + strand, within ABIE40_RS27380 at 190.231 kb on + strand, within ABIE40_RS27380 at 190.231 kb on + strand, within ABIE40_RS27380 at 190.232 kb on - strand, within ABIE40_RS27380 at 190.232 kb on - strand, within ABIE40_RS27380 at 190.443 kb on + strand, within ABIE40_RS27385 at 190.443 kb on + strand, within ABIE40_RS27385 at 190.443 kb on + strand, within ABIE40_RS27385 at 190.444 kb on - strand, within ABIE40_RS27385 at 190.444 kb on - strand, within ABIE40_RS27385 at 190.444 kb on - strand, within ABIE40_RS27385 at 190.444 kb on - strand, within ABIE40_RS27385 at 190.502 kb on + strand at 190.502 kb on + strand at 190.502 kb on + strand at 190.685 kb on - strand at 190.749 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 188,664 - ABIE40_RS27365 0.77 +0.5 188,675 - ABIE40_RS27365 0.77 -2.6 188,725 + ABIE40_RS27365 0.81 -1.4 188,728 + ABIE40_RS27365 0.81 +1.4 188,729 - ABIE40_RS27365 0.81 -1.9 188,729 - ABIE40_RS27365 0.81 +0.2 188,729 - ABIE40_RS27365 0.81 +0.3 188,729 - ABIE40_RS27365 0.81 -2.1 188,817 + ABIE40_RS27365 0.87 -1.1 188,818 - ABIE40_RS27365 0.87 -2.5 188,833 - ABIE40_RS27365 0.88 -1.3 188,833 - ABIE40_RS27365 0.88 -0.0 188,850 - ABIE40_RS27365 0.89 +0.2 189,038 - +0.7 189,071 + ABIE40_RS27370 0.14 -0.6 189,071 + ABIE40_RS27370 0.14 -0.1 189,071 + ABIE40_RS27370 0.14 +0.7 189,072 - ABIE40_RS27370 0.14 +0.2 189,072 - ABIE40_RS27370 0.14 +0.2 189,072 - ABIE40_RS27370 0.14 +0.4 189,072 - ABIE40_RS27370 0.14 -0.8 189,072 - ABIE40_RS27370 0.14 +0.1 189,072 - ABIE40_RS27370 0.14 -2.2 189,218 + ABIE40_RS27370 0.54 -1.7 189,219 - ABIE40_RS27370 0.55 -2.8 189,262 + ABIE40_RS27370 0.66 +0.0 189,262 + ABIE40_RS27370 0.66 +0.5 189,263 - ABIE40_RS27370 0.67 -1.7 189,263 - ABIE40_RS27370 0.67 -0.9 189,331 - ABIE40_RS27370 0.85 -0.3 189,384 + -0.3 189,436 + -1.1 189,437 - +0.7 189,437 - +2.2 189,441 + -1.5 189,448 + +1.2 189,448 + -2.2 189,449 - -1.1 189,449 - +0.2 189,507 - -0.3 189,518 + ABIE40_RS27375 0.11 -1.1 189,543 + ABIE40_RS27375 0.17 +1.7 189,543 + ABIE40_RS27375 0.17 -1.6 189,543 + ABIE40_RS27375 0.17 -0.3 189,543 + ABIE40_RS27375 0.17 -0.8 189,544 - ABIE40_RS27375 0.17 -1.8 189,637 + ABIE40_RS27375 0.41 -0.8 189,892 + -0.1 189,903 - +0.2 189,903 - -0.7 189,903 - +0.0 189,903 - +0.2 189,930 + -2.2 189,930 + +0.4 190,035 + +0.3 190,035 + +3.1 190,036 - -0.1 190,138 + ABIE40_RS27380 0.32 +0.8 190,138 + ABIE40_RS27380 0.32 +0.6 190,138 + ABIE40_RS27380 0.32 +0.2 190,139 - ABIE40_RS27380 0.33 -0.5 190,160 + ABIE40_RS27380 0.43 +0.7 190,160 + ABIE40_RS27380 0.43 +1.4 190,231 + ABIE40_RS27380 0.77 -1.4 190,231 + ABIE40_RS27380 0.77 +0.6 190,231 + ABIE40_RS27380 0.77 -1.5 190,232 - ABIE40_RS27380 0.77 +0.7 190,232 - ABIE40_RS27380 0.77 -1.7 190,443 + ABIE40_RS27385 0.81 -0.3 190,443 + ABIE40_RS27385 0.81 -0.6 190,443 + ABIE40_RS27385 0.81 +0.3 190,444 - ABIE40_RS27385 0.82 +0.6 190,444 - ABIE40_RS27385 0.82 +0.4 190,444 - ABIE40_RS27385 0.82 +0.4 190,444 - ABIE40_RS27385 0.82 +0.0 190,502 + +0.1 190,502 + +1.3 190,502 + +0.6 190,685 - -0.3 190,749 + -0.5
Or see this region's nucleotide sequence