Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23880 and ABIE40_RS23885 are separated by 187 nucleotides ABIE40_RS23885 and ABIE40_RS23890 are separated by 15 nucleotides ABIE40_RS23890 and ABIE40_RS23895 are separated by 252 nucleotides ABIE40_RS23895 and ABIE40_RS23900 are separated by 15 nucleotides
ABIE40_RS23880: ABIE40_RS23880 - efflux RND transporter periplasmic adaptor subunit, at 920,681 to 921,853
_RS23880
ABIE40_RS23885: ABIE40_RS23885 - DedA family protein, at 922,041 to 922,601
_RS23885
ABIE40_RS23890: ABIE40_RS23890 - calcium:proton antiporter, at 922,617 to 923,747
_RS23890
ABIE40_RS23895: ABIE40_RS23895 - helix-turn-helix transcriptional regulator, at 924,000 to 924,227
_RS23895
ABIE40_RS23900: ABIE40_RS23900 - histidine utilization repressor, at 924,243 to 924,998
_RS23900
Position (kb) 922
923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 921.686 kb on - strand, within ABIE40_RS23880 at 921.729 kb on + strand, within ABIE40_RS23880 at 921.792 kb on + strand at 921.792 kb on + strand at 921.792 kb on + strand at 921.792 kb on + strand at 921.792 kb on + strand at 921.793 kb on - strand at 921.793 kb on - strand at 921.793 kb on - strand at 921.793 kb on - strand at 921.793 kb on - strand at 921.793 kb on - strand at 921.821 kb on - strand at 921.896 kb on + strand at 921.896 kb on + strand at 921.896 kb on + strand at 921.896 kb on + strand at 921.896 kb on + strand at 921.896 kb on + strand at 921.896 kb on + strand at 921.896 kb on + strand at 921.897 kb on - strand at 921.897 kb on - strand at 921.897 kb on - strand at 921.897 kb on - strand at 921.901 kb on + strand at 921.901 kb on + strand at 921.902 kb on - strand at 921.902 kb on - strand at 921.917 kb on + strand at 921.918 kb on - strand at 921.937 kb on + strand at 921.938 kb on - strand at 921.938 kb on - strand at 921.960 kb on - strand at 921.967 kb on + strand at 922.061 kb on + strand at 922.061 kb on + strand at 922.061 kb on + strand at 922.061 kb on + strand at 922.061 kb on + strand at 922.062 kb on - strand at 922.062 kb on - strand at 922.063 kb on + strand at 922.063 kb on + strand at 922.064 kb on - strand at 922.064 kb on - strand at 922.064 kb on - strand at 922.064 kb on - strand at 922.155 kb on + strand, within ABIE40_RS23885 at 922.174 kb on + strand, within ABIE40_RS23885 at 922.294 kb on + strand, within ABIE40_RS23885 at 922.295 kb on - strand, within ABIE40_RS23885 at 922.316 kb on + strand, within ABIE40_RS23885 at 922.317 kb on - strand, within ABIE40_RS23885 at 922.317 kb on - strand, within ABIE40_RS23885 at 922.480 kb on + strand, within ABIE40_RS23885 at 922.480 kb on + strand, within ABIE40_RS23885 at 922.481 kb on - strand, within ABIE40_RS23885 at 922.481 kb on - strand, within ABIE40_RS23885 at 922.572 kb on + strand at 922.574 kb on - strand at 922.642 kb on + strand at 922.642 kb on + strand at 922.642 kb on + strand at 922.642 kb on + strand at 922.642 kb on + strand at 922.642 kb on + strand at 922.642 kb on + strand at 922.643 kb on - strand at 922.643 kb on - strand at 922.643 kb on - strand at 922.643 kb on - strand at 922.682 kb on + strand at 922.682 kb on + strand at 922.682 kb on + strand at 922.682 kb on + strand at 922.682 kb on + strand at 922.682 kb on + strand at 922.682 kb on + strand at 922.682 kb on + strand at 922.683 kb on - strand at 922.683 kb on - strand at 922.683 kb on - strand at 922.683 kb on - strand at 922.787 kb on + strand, within ABIE40_RS23890 at 922.981 kb on + strand, within ABIE40_RS23890 at 922.981 kb on + strand, within ABIE40_RS23890 at 922.981 kb on + strand, within ABIE40_RS23890 at 922.982 kb on - strand, within ABIE40_RS23890 at 922.982 kb on - strand, within ABIE40_RS23890 at 923.030 kb on + strand, within ABIE40_RS23890 at 923.030 kb on + strand, within ABIE40_RS23890 at 923.030 kb on + strand, within ABIE40_RS23890 at 923.030 kb on + strand, within ABIE40_RS23890 at 923.031 kb on - strand, within ABIE40_RS23890 at 923.031 kb on - strand, within ABIE40_RS23890 at 923.032 kb on + strand, within ABIE40_RS23890 at 923.032 kb on + strand, within ABIE40_RS23890 at 923.032 kb on + strand, within ABIE40_RS23890 at 923.032 kb on + strand, within ABIE40_RS23890 at 923.032 kb on + strand, within ABIE40_RS23890 at 923.032 kb on + strand, within ABIE40_RS23890 at 923.033 kb on - strand, within ABIE40_RS23890 at 923.033 kb on - strand, within ABIE40_RS23890 at 923.033 kb on - strand, within ABIE40_RS23890 at 923.033 kb on - strand, within ABIE40_RS23890 at 923.033 kb on - strand, within ABIE40_RS23890 at 923.033 kb on - strand, within ABIE40_RS23890 at 923.033 kb on - strand, within ABIE40_RS23890 at 923.125 kb on + strand, within ABIE40_RS23890 at 923.125 kb on + strand, within ABIE40_RS23890 at 923.126 kb on - strand, within ABIE40_RS23890 at 923.167 kb on + strand, within ABIE40_RS23890 at 923.168 kb on - strand, within ABIE40_RS23890 at 923.168 kb on - strand, within ABIE40_RS23890 at 923.238 kb on - strand, within ABIE40_RS23890 at 923.238 kb on - strand, within ABIE40_RS23890 at 923.238 kb on - strand, within ABIE40_RS23890 at 923.290 kb on + strand, within ABIE40_RS23890 at 923.290 kb on + strand, within ABIE40_RS23890 at 923.291 kb on - strand, within ABIE40_RS23890 at 923.291 kb on - strand, within ABIE40_RS23890 at 923.291 kb on - strand, within ABIE40_RS23890 at 923.291 kb on - strand, within ABIE40_RS23890 at 923.355 kb on + strand, within ABIE40_RS23890 at 923.356 kb on - strand, within ABIE40_RS23890 at 923.503 kb on + strand, within ABIE40_RS23890 at 923.504 kb on - strand, within ABIE40_RS23890 at 923.785 kb on + strand at 923.785 kb on + strand at 923.786 kb on - strand at 923.845 kb on + strand at 923.845 kb on + strand at 923.845 kb on + strand at 923.845 kb on + strand at 923.846 kb on - strand at 924.037 kb on + strand, within ABIE40_RS23895 at 924.038 kb on - strand, within ABIE40_RS23895 at 924.038 kb on - strand, within ABIE40_RS23895 at 924.038 kb on - strand, within ABIE40_RS23895 at 924.084 kb on + strand, within ABIE40_RS23895 at 924.084 kb on + strand, within ABIE40_RS23895 at 924.085 kb on - strand, within ABIE40_RS23895 at 924.173 kb on + strand, within ABIE40_RS23895 at 924.173 kb on + strand, within ABIE40_RS23895 at 924.173 kb on + strand, within ABIE40_RS23895 at 924.174 kb on - strand, within ABIE40_RS23895 at 924.174 kb on - strand, within ABIE40_RS23895 at 924.222 kb on - strand at 924.238 kb on + strand at 924.239 kb on - strand at 924.239 kb on - strand at 924.244 kb on + strand at 924.463 kb on - strand, within ABIE40_RS23900 at 924.463 kb on - strand, within ABIE40_RS23900 at 924.463 kb on - strand, within ABIE40_RS23900 at 924.466 kb on + strand, within ABIE40_RS23900 at 924.466 kb on + strand, within ABIE40_RS23900 at 924.466 kb on + strand, within ABIE40_RS23900 at 924.467 kb on - strand, within ABIE40_RS23900 at 924.467 kb on - strand, within ABIE40_RS23900 at 924.467 kb on - strand, within ABIE40_RS23900 at 924.467 kb on - strand, within ABIE40_RS23900 at 924.467 kb on - strand, within ABIE40_RS23900 at 924.505 kb on + strand, within ABIE40_RS23900 at 924.506 kb on - strand, within ABIE40_RS23900 at 924.532 kb on + strand, within ABIE40_RS23900 at 924.532 kb on + strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.736 kb on - strand, within ABIE40_RS23900
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 921,686 - ABIE40_RS23880 0.86 -0.5 921,729 + ABIE40_RS23880 0.89 -1.5 921,792 + -1.7 921,792 + +1.9 921,792 + -1.0 921,792 + +0.7 921,792 + -0.5 921,793 - -1.3 921,793 - -0.8 921,793 - +1.9 921,793 - +0.0 921,793 - +0.1 921,793 - -0.9 921,821 - -0.7 921,896 + +0.7 921,896 + -0.4 921,896 + -1.9 921,896 + -0.5 921,896 + -0.7 921,896 + +0.4 921,896 + -0.7 921,896 + +1.8 921,897 - -0.6 921,897 - -2.0 921,897 - +1.3 921,897 - -0.4 921,901 + +0.5 921,901 + -1.0 921,902 - -0.9 921,902 - -2.0 921,917 + -0.1 921,918 - -1.3 921,937 + -1.2 921,938 - -0.6 921,938 - -1.3 921,960 - +2.9 921,967 + -1.4 922,061 + +0.6 922,061 + -0.3 922,061 + -1.3 922,061 + +0.1 922,061 + -1.1 922,062 - +0.9 922,062 - +0.7 922,063 + -1.6 922,063 + -1.3 922,064 - +0.7 922,064 - -1.6 922,064 - +0.9 922,064 - -0.1 922,155 + ABIE40_RS23885 0.20 -0.1 922,174 + ABIE40_RS23885 0.24 +0.8 922,294 + ABIE40_RS23885 0.45 -0.1 922,295 - ABIE40_RS23885 0.45 +0.3 922,316 + ABIE40_RS23885 0.49 -0.8 922,317 - ABIE40_RS23885 0.49 +0.2 922,317 - ABIE40_RS23885 0.49 -0.2 922,480 + ABIE40_RS23885 0.78 -3.3 922,480 + ABIE40_RS23885 0.78 -0.7 922,481 - ABIE40_RS23885 0.78 +0.7 922,481 - ABIE40_RS23885 0.78 +0.1 922,572 + -0.5 922,574 - -0.2 922,642 + +0.1 922,642 + -1.4 922,642 + +0.9 922,642 + -0.3 922,642 + -0.7 922,642 + -0.5 922,642 + +0.9 922,643 - -1.6 922,643 - +3.5 922,643 - +0.5 922,643 - +1.6 922,682 + -0.4 922,682 + -1.2 922,682 + -1.0 922,682 + +0.7 922,682 + +0.3 922,682 + -0.8 922,682 + -2.2 922,682 + -0.0 922,683 - +1.0 922,683 - -0.1 922,683 - -0.2 922,683 - +0.6 922,787 + ABIE40_RS23890 0.15 +0.8 922,981 + ABIE40_RS23890 0.32 -0.0 922,981 + ABIE40_RS23890 0.32 +0.6 922,981 + ABIE40_RS23890 0.32 -1.1 922,982 - ABIE40_RS23890 0.32 -1.5 922,982 - ABIE40_RS23890 0.32 +1.2 923,030 + ABIE40_RS23890 0.37 -1.8 923,030 + ABIE40_RS23890 0.37 +0.7 923,030 + ABIE40_RS23890 0.37 -0.4 923,030 + ABIE40_RS23890 0.37 -0.1 923,031 - ABIE40_RS23890 0.37 +1.0 923,031 - ABIE40_RS23890 0.37 -0.1 923,032 + ABIE40_RS23890 0.37 +0.1 923,032 + ABIE40_RS23890 0.37 +1.3 923,032 + ABIE40_RS23890 0.37 +0.7 923,032 + ABIE40_RS23890 0.37 -0.1 923,032 + ABIE40_RS23890 0.37 +0.9 923,032 + ABIE40_RS23890 0.37 +1.1 923,033 - ABIE40_RS23890 0.37 -2.0 923,033 - ABIE40_RS23890 0.37 +0.4 923,033 - ABIE40_RS23890 0.37 +0.1 923,033 - ABIE40_RS23890 0.37 -1.1 923,033 - ABIE40_RS23890 0.37 -0.4 923,033 - ABIE40_RS23890 0.37 -0.4 923,033 - ABIE40_RS23890 0.37 -1.1 923,125 + ABIE40_RS23890 0.45 -1.1 923,125 + ABIE40_RS23890 0.45 +0.1 923,126 - ABIE40_RS23890 0.45 +0.2 923,167 + ABIE40_RS23890 0.49 -1.2 923,168 - ABIE40_RS23890 0.49 +0.4 923,168 - ABIE40_RS23890 0.49 -0.1 923,238 - ABIE40_RS23890 0.55 -1.1 923,238 - ABIE40_RS23890 0.55 -0.6 923,238 - ABIE40_RS23890 0.55 -0.9 923,290 + ABIE40_RS23890 0.60 -0.4 923,290 + ABIE40_RS23890 0.60 -0.3 923,291 - ABIE40_RS23890 0.60 +1.0 923,291 - ABIE40_RS23890 0.60 +0.9 923,291 - ABIE40_RS23890 0.60 -0.1 923,291 - ABIE40_RS23890 0.60 +0.5 923,355 + ABIE40_RS23890 0.65 +0.7 923,356 - ABIE40_RS23890 0.65 +0.9 923,503 + ABIE40_RS23890 0.78 +1.4 923,504 - ABIE40_RS23890 0.78 +0.8 923,785 + +2.2 923,785 + -0.8 923,786 - +1.9 923,845 + +1.9 923,845 + +0.3 923,845 + -0.7 923,845 + +0.7 923,846 - +0.7 924,037 + ABIE40_RS23895 0.16 -0.1 924,038 - ABIE40_RS23895 0.17 +0.6 924,038 - ABIE40_RS23895 0.17 -0.2 924,038 - ABIE40_RS23895 0.17 +0.0 924,084 + ABIE40_RS23895 0.37 +1.9 924,084 + ABIE40_RS23895 0.37 +0.3 924,085 - ABIE40_RS23895 0.37 -0.4 924,173 + ABIE40_RS23895 0.76 +0.6 924,173 + ABIE40_RS23895 0.76 -2.6 924,173 + ABIE40_RS23895 0.76 -2.1 924,174 - ABIE40_RS23895 0.76 +1.1 924,174 - ABIE40_RS23895 0.76 -0.0 924,222 - -1.4 924,238 + +0.4 924,239 - -1.3 924,239 - +0.3 924,244 + -1.1 924,463 - ABIE40_RS23900 0.29 +0.4 924,463 - ABIE40_RS23900 0.29 -2.4 924,463 - ABIE40_RS23900 0.29 -0.1 924,466 + ABIE40_RS23900 0.29 +0.1 924,466 + ABIE40_RS23900 0.29 +1.1 924,466 + ABIE40_RS23900 0.29 -1.6 924,467 - ABIE40_RS23900 0.30 +0.9 924,467 - ABIE40_RS23900 0.30 -2.0 924,467 - ABIE40_RS23900 0.30 +1.3 924,467 - ABIE40_RS23900 0.30 +1.9 924,467 - ABIE40_RS23900 0.30 -0.3 924,505 + ABIE40_RS23900 0.35 +0.7 924,506 - ABIE40_RS23900 0.35 -0.4 924,532 + ABIE40_RS23900 0.38 +0.4 924,532 + ABIE40_RS23900 0.38 +2.1 924,533 - ABIE40_RS23900 0.38 -1.4 924,533 - ABIE40_RS23900 0.38 +0.1 924,533 - ABIE40_RS23900 0.38 -1.7 924,533 - ABIE40_RS23900 0.38 +0.7 924,533 - ABIE40_RS23900 0.38 -1.7 924,533 - ABIE40_RS23900 0.38 -1.3 924,533 - ABIE40_RS23900 0.38 +0.6 924,736 - ABIE40_RS23900 0.65 -0.9
Or see this region's nucleotide sequence