Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23670 and ABIE40_RS23675 are separated by 118 nucleotides ABIE40_RS23675 and ABIE40_RS23680 are separated by 40 nucleotides ABIE40_RS23680 and ABIE40_RS23685 are separated by 256 nucleotides ABIE40_RS23685 and ABIE40_RS23690 are separated by 0 nucleotides
ABIE40_RS23670: ABIE40_RS23670 - hypothetical protein, at 876,305 to 876,481
_RS23670
ABIE40_RS23675: ABIE40_RS23675 - hypothetical protein, at 876,600 to 876,764
_RS23675
ABIE40_RS23680: ABIE40_RS23680 - hypothetical protein, at 876,805 to 876,972
_RS23680
ABIE40_RS23685: ABIE40_RS23685 - hypothetical protein, at 877,229 to 877,699
_RS23685
ABIE40_RS23690: ABIE40_RS23690 - methyl-accepting chemotaxis protein, at 877,700 to 879,286
_RS23690
Position (kb) 877
878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 876.257 kb on - strand at 876.257 kb on - strand at 876.280 kb on + strand at 876.280 kb on + strand at 876.280 kb on + strand at 876.339 kb on + strand, within ABIE40_RS23670 at 876.354 kb on + strand, within ABIE40_RS23670 at 876.354 kb on + strand, within ABIE40_RS23670 at 876.515 kb on + strand at 876.515 kb on + strand at 876.515 kb on + strand at 876.515 kb on + strand at 876.516 kb on - strand at 876.516 kb on - strand at 876.516 kb on - strand at 876.516 kb on - strand at 876.516 kb on - strand at 876.602 kb on - strand at 876.824 kb on + strand, within ABIE40_RS23680 at 876.824 kb on + strand, within ABIE40_RS23680 at 876.824 kb on + strand, within ABIE40_RS23680 at 876.824 kb on + strand, within ABIE40_RS23680 at 876.933 kb on + strand, within ABIE40_RS23680 at 876.933 kb on + strand, within ABIE40_RS23680 at 876.933 kb on + strand, within ABIE40_RS23680 at 876.934 kb on - strand, within ABIE40_RS23680 at 876.934 kb on - strand, within ABIE40_RS23680 at 876.957 kb on - strand at 876.971 kb on - strand at 877.075 kb on + strand at 877.102 kb on - strand at 877.124 kb on - strand at 877.132 kb on + strand at 877.144 kb on - strand at 877.188 kb on + strand at 877.204 kb on + strand at 877.205 kb on - strand at 877.330 kb on + strand, within ABIE40_RS23685 at 877.331 kb on - strand, within ABIE40_RS23685 at 877.427 kb on + strand, within ABIE40_RS23685 at 877.428 kb on - strand, within ABIE40_RS23685 at 877.428 kb on - strand, within ABIE40_RS23685 at 877.428 kb on - strand, within ABIE40_RS23685 at 877.694 kb on - strand at 877.694 kb on - strand at 877.943 kb on + strand, within ABIE40_RS23690 at 877.943 kb on + strand, within ABIE40_RS23690 at 877.943 kb on + strand, within ABIE40_RS23690 at 877.944 kb on - strand, within ABIE40_RS23690 at 877.977 kb on + strand, within ABIE40_RS23690 at 877.977 kb on + strand, within ABIE40_RS23690 at 877.977 kb on + strand, within ABIE40_RS23690 at 877.977 kb on + strand, within ABIE40_RS23690 at 877.977 kb on + strand, within ABIE40_RS23690 at 877.977 kb on + strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.978 kb on - strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.981 kb on + strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.982 kb on - strand, within ABIE40_RS23690 at 877.985 kb on + strand, within ABIE40_RS23690 at 877.986 kb on - strand, within ABIE40_RS23690 at 878.059 kb on + strand, within ABIE40_RS23690 at 878.060 kb on - strand, within ABIE40_RS23690 at 878.081 kb on + strand, within ABIE40_RS23690 at 878.082 kb on - strand, within ABIE40_RS23690 at 878.299 kb on - strand, within ABIE40_RS23690 at 878.299 kb on - strand, within ABIE40_RS23690 at 878.408 kb on + strand, within ABIE40_RS23690 at 878.503 kb on + strand, within ABIE40_RS23690 at 878.503 kb on + strand, within ABIE40_RS23690 at 878.649 kb on + strand, within ABIE40_RS23690
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 876,257 - -1.1 876,257 - -1.1 876,280 + -1.1 876,280 + +0.2 876,280 + +1.7 876,339 + ABIE40_RS23670 0.19 +0.9 876,354 + ABIE40_RS23670 0.28 +0.9 876,354 + ABIE40_RS23670 0.28 +0.3 876,515 + +0.5 876,515 + -0.4 876,515 + -0.5 876,515 + +0.1 876,516 - +0.2 876,516 - +0.9 876,516 - +2.1 876,516 - +1.0 876,516 - +0.3 876,602 - +0.6 876,824 + ABIE40_RS23680 0.11 +0.1 876,824 + ABIE40_RS23680 0.11 -1.8 876,824 + ABIE40_RS23680 0.11 -0.4 876,824 + ABIE40_RS23680 0.11 +1.6 876,933 + ABIE40_RS23680 0.76 -3.3 876,933 + ABIE40_RS23680 0.76 +0.5 876,933 + ABIE40_RS23680 0.76 +2.1 876,934 - ABIE40_RS23680 0.77 -0.4 876,934 - ABIE40_RS23680 0.77 -0.6 876,957 - +0.6 876,971 - +0.8 877,075 + +0.7 877,102 - -0.9 877,124 - -1.0 877,132 + +0.1 877,144 - -2.5 877,188 + -0.4 877,204 + +0.1 877,205 - +1.0 877,330 + ABIE40_RS23685 0.21 -0.7 877,331 - ABIE40_RS23685 0.22 -0.4 877,427 + ABIE40_RS23685 0.42 -1.6 877,428 - ABIE40_RS23685 0.42 -1.1 877,428 - ABIE40_RS23685 0.42 -0.2 877,428 - ABIE40_RS23685 0.42 -0.8 877,694 - -2.9 877,694 - +0.6 877,943 + ABIE40_RS23690 0.15 -1.4 877,943 + ABIE40_RS23690 0.15 +0.2 877,943 + ABIE40_RS23690 0.15 +0.6 877,944 - ABIE40_RS23690 0.15 -0.7 877,977 + ABIE40_RS23690 0.17 +3.5 877,977 + ABIE40_RS23690 0.17 -0.4 877,977 + ABIE40_RS23690 0.17 -0.8 877,977 + ABIE40_RS23690 0.17 -0.8 877,977 + ABIE40_RS23690 0.17 +1.2 877,977 + ABIE40_RS23690 0.17 +0.3 877,978 - ABIE40_RS23690 0.18 -1.3 877,978 - ABIE40_RS23690 0.18 +1.4 877,978 - ABIE40_RS23690 0.18 +0.8 877,978 - ABIE40_RS23690 0.18 -0.2 877,978 - ABIE40_RS23690 0.18 -0.1 877,978 - ABIE40_RS23690 0.18 -0.7 877,978 - ABIE40_RS23690 0.18 -0.9 877,978 - ABIE40_RS23690 0.18 -0.8 877,978 - ABIE40_RS23690 0.18 -0.5 877,978 - ABIE40_RS23690 0.18 +0.1 877,978 - ABIE40_RS23690 0.18 -0.4 877,978 - ABIE40_RS23690 0.18 +0.3 877,978 - ABIE40_RS23690 0.18 -1.0 877,978 - ABIE40_RS23690 0.18 -0.8 877,978 - ABIE40_RS23690 0.18 +1.2 877,978 - ABIE40_RS23690 0.18 +0.0 877,978 - ABIE40_RS23690 0.18 -1.0 877,981 + ABIE40_RS23690 0.18 -0.4 877,981 + ABIE40_RS23690 0.18 -0.8 877,981 + ABIE40_RS23690 0.18 -1.4 877,981 + ABIE40_RS23690 0.18 +0.2 877,981 + ABIE40_RS23690 0.18 -0.1 877,981 + ABIE40_RS23690 0.18 -1.2 877,981 + ABIE40_RS23690 0.18 -3.3 877,981 + ABIE40_RS23690 0.18 +1.8 877,981 + ABIE40_RS23690 0.18 -1.4 877,981 + ABIE40_RS23690 0.18 +0.4 877,981 + ABIE40_RS23690 0.18 +0.5 877,981 + ABIE40_RS23690 0.18 -2.3 877,981 + ABIE40_RS23690 0.18 -1.3 877,981 + ABIE40_RS23690 0.18 -0.4 877,982 - ABIE40_RS23690 0.18 -1.3 877,982 - ABIE40_RS23690 0.18 +0.9 877,982 - ABIE40_RS23690 0.18 -1.1 877,982 - ABIE40_RS23690 0.18 -0.7 877,982 - ABIE40_RS23690 0.18 +0.9 877,982 - ABIE40_RS23690 0.18 -1.3 877,982 - ABIE40_RS23690 0.18 -0.6 877,982 - ABIE40_RS23690 0.18 +0.9 877,982 - ABIE40_RS23690 0.18 -0.4 877,982 - ABIE40_RS23690 0.18 +0.3 877,982 - ABIE40_RS23690 0.18 +0.1 877,982 - ABIE40_RS23690 0.18 +1.9 877,982 - ABIE40_RS23690 0.18 -0.2 877,982 - ABIE40_RS23690 0.18 +1.1 877,982 - ABIE40_RS23690 0.18 -1.9 877,982 - ABIE40_RS23690 0.18 +0.3 877,982 - ABIE40_RS23690 0.18 -0.1 877,982 - ABIE40_RS23690 0.18 +1.5 877,982 - ABIE40_RS23690 0.18 +0.2 877,982 - ABIE40_RS23690 0.18 +0.6 877,982 - ABIE40_RS23690 0.18 -1.7 877,982 - ABIE40_RS23690 0.18 -2.9 877,982 - ABIE40_RS23690 0.18 +0.3 877,982 - ABIE40_RS23690 0.18 -0.1 877,982 - ABIE40_RS23690 0.18 +0.8 877,982 - ABIE40_RS23690 0.18 -2.3 877,982 - ABIE40_RS23690 0.18 -0.4 877,985 + ABIE40_RS23690 0.18 -2.4 877,986 - ABIE40_RS23690 0.18 -1.0 878,059 + ABIE40_RS23690 0.23 -2.4 878,060 - ABIE40_RS23690 0.23 -1.4 878,081 + ABIE40_RS23690 0.24 +1.0 878,082 - ABIE40_RS23690 0.24 -0.1 878,299 - ABIE40_RS23690 0.38 +0.3 878,299 - ABIE40_RS23690 0.38 -0.1 878,408 + ABIE40_RS23690 0.45 +1.0 878,503 + ABIE40_RS23690 0.51 -1.9 878,503 + ABIE40_RS23690 0.51 -0.6 878,649 + ABIE40_RS23690 0.60 -0.7
Or see this region's nucleotide sequence