Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22175

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22170 and ABIE40_RS22175 are separated by 111 nucleotidesABIE40_RS22175 and ABIE40_RS22180 are separated by 125 nucleotidesABIE40_RS22180 and ABIE40_RS22185 are separated by 172 nucleotides ABIE40_RS22170: ABIE40_RS22170 - phosphatase PAP2 family protein, at 569,837 to 570,871 _RS22170 ABIE40_RS22175: ABIE40_RS22175 - hypothetical protein, at 570,983 to 572,182 _RS22175 ABIE40_RS22180: ABIE40_RS22180 - putative glycolipid-binding domain-containing protein, at 572,308 to 572,871 _RS22180 ABIE40_RS22185: ABIE40_RS22185 - glucose-6-phosphate dehydrogenase, at 573,044 to 574,540 _RS22185 Position (kb) 570 571 572 573Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 570.026 kb on + strand, within ABIE40_RS22170at 570.066 kb on + strand, within ABIE40_RS22170at 570.066 kb on + strand, within ABIE40_RS22170at 570.067 kb on - strand, within ABIE40_RS22170at 570.067 kb on - strand, within ABIE40_RS22170at 570.067 kb on - strand, within ABIE40_RS22170at 570.114 kb on + strand, within ABIE40_RS22170at 570.114 kb on + strand, within ABIE40_RS22170at 570.115 kb on - strand, within ABIE40_RS22170at 570.115 kb on - strand, within ABIE40_RS22170at 570.140 kb on + strand, within ABIE40_RS22170at 570.140 kb on + strand, within ABIE40_RS22170at 570.141 kb on - strand, within ABIE40_RS22170at 570.141 kb on - strand, within ABIE40_RS22170at 570.141 kb on - strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.179 kb on + strand, within ABIE40_RS22170at 570.180 kb on - strand, within ABIE40_RS22170at 570.180 kb on - strand, within ABIE40_RS22170at 570.262 kb on + strand, within ABIE40_RS22170at 570.262 kb on + strand, within ABIE40_RS22170at 570.263 kb on - strand, within ABIE40_RS22170at 570.263 kb on - strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.269 kb on + strand, within ABIE40_RS22170at 570.270 kb on - strand, within ABIE40_RS22170at 570.270 kb on - strand, within ABIE40_RS22170at 570.270 kb on - strand, within ABIE40_RS22170at 570.317 kb on + strand, within ABIE40_RS22170at 570.317 kb on + strand, within ABIE40_RS22170at 570.318 kb on - strand, within ABIE40_RS22170at 570.339 kb on + strand, within ABIE40_RS22170at 570.340 kb on - strand, within ABIE40_RS22170at 570.357 kb on + strand, within ABIE40_RS22170at 570.358 kb on - strand, within ABIE40_RS22170at 570.358 kb on - strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.467 kb on + strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.468 kb on - strand, within ABIE40_RS22170at 570.473 kb on + strand, within ABIE40_RS22170at 570.473 kb on + strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.474 kb on - strand, within ABIE40_RS22170at 570.476 kb on + strand, within ABIE40_RS22170at 570.513 kb on + strand, within ABIE40_RS22170at 570.513 kb on + strand, within ABIE40_RS22170at 570.513 kb on + strand, within ABIE40_RS22170at 570.514 kb on - strand, within ABIE40_RS22170at 570.514 kb on - strand, within ABIE40_RS22170at 570.514 kb on - strand, within ABIE40_RS22170at 570.527 kb on + strand, within ABIE40_RS22170at 570.527 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.673 kb on + strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.674 kb on - strand, within ABIE40_RS22170at 570.678 kb on - strand, within ABIE40_RS22170at 570.738 kb on - strand, within ABIE40_RS22170at 570.783 kb on + strandat 570.802 kb on + strandat 570.802 kb on + strandat 570.802 kb on + strandat 570.802 kb on + strandat 570.803 kb on - strandat 570.840 kb on + strandat 570.841 kb on - strandat 570.903 kb on + strandat 570.903 kb on + strandat 570.903 kb on + strandat 570.904 kb on - strandat 570.904 kb on - strandat 570.925 kb on + strandat 570.944 kb on - strandat 570.945 kb on + strandat 570.945 kb on + strandat 570.946 kb on - strandat 570.946 kb on - strandat 570.946 kb on - strandat 570.946 kb on - strandat 570.984 kb on + strandat 571.178 kb on + strand, within ABIE40_RS22175at 571.178 kb on + strand, within ABIE40_RS22175at 571.178 kb on + strand, within ABIE40_RS22175at 571.179 kb on - strand, within ABIE40_RS22175at 571.179 kb on - strand, within ABIE40_RS22175at 571.179 kb on - strand, within ABIE40_RS22175at 571.179 kb on - strand, within ABIE40_RS22175at 571.280 kb on + strand, within ABIE40_RS22175at 571.281 kb on - strand, within ABIE40_RS22175at 571.281 kb on - strand, within ABIE40_RS22175at 571.281 kb on - strand, within ABIE40_RS22175at 571.415 kb on - strand, within ABIE40_RS22175at 571.623 kb on + strand, within ABIE40_RS22175at 571.689 kb on + strand, within ABIE40_RS22175at 571.690 kb on - strand, within ABIE40_RS22175at 571.690 kb on - strand, within ABIE40_RS22175at 571.755 kb on + strand, within ABIE40_RS22175at 571.755 kb on + strand, within ABIE40_RS22175at 571.755 kb on + strand, within ABIE40_RS22175at 571.755 kb on + strand, within ABIE40_RS22175at 571.755 kb on + strand, within ABIE40_RS22175at 571.756 kb on - strand, within ABIE40_RS22175at 571.756 kb on - strand, within ABIE40_RS22175at 571.756 kb on - strand, within ABIE40_RS22175at 571.947 kb on - strand, within ABIE40_RS22175at 571.947 kb on - strand, within ABIE40_RS22175at 571.969 kb on + strand, within ABIE40_RS22175at 571.970 kb on - strand, within ABIE40_RS22175at 571.970 kb on - strand, within ABIE40_RS22175at 572.049 kb on + strand, within ABIE40_RS22175at 572.049 kb on + strand, within ABIE40_RS22175at 572.049 kb on + strand, within ABIE40_RS22175at 572.050 kb on - strand, within ABIE40_RS22175at 572.133 kb on + strandat 572.133 kb on + strandat 572.133 kb on + strandat 572.133 kb on + strandat 572.133 kb on + strandat 572.133 kb on + strandat 572.159 kb on + strandat 572.159 kb on + strandat 572.160 kb on - strandat 572.160 kb on - strandat 572.160 kb on - strandat 572.160 kb on - strandat 572.173 kb on - strandat 572.268 kb on + strandat 572.268 kb on + strandat 572.269 kb on - strandat 572.271 kb on - strandat 572.271 kb on - strandat 572.271 kb on - strandat 572.271 kb on - strandat 572.292 kb on + strandat 572.345 kb on + strandat 572.345 kb on + strandat 572.346 kb on - strandat 572.346 kb on - strandat 572.346 kb on - strandat 572.417 kb on + strand, within ABIE40_RS22180at 572.417 kb on + strand, within ABIE40_RS22180at 572.418 kb on - strand, within ABIE40_RS22180at 572.447 kb on + strand, within ABIE40_RS22180at 572.447 kb on + strand, within ABIE40_RS22180at 572.514 kb on + strand, within ABIE40_RS22180at 572.889 kb on + strandat 573.045 kb on + strandat 573.045 kb on + strandat 573.045 kb on + strandat 573.046 kb on - strandat 573.141 kb on + strandat 573.142 kb on - strandat 573.142 kb on - strandat 573.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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570,026 + ABIE40_RS22170 0.18 +2.8
570,066 + ABIE40_RS22170 0.22 +1.3
570,066 + ABIE40_RS22170 0.22 -1.4
570,067 - ABIE40_RS22170 0.22 +0.4
570,067 - ABIE40_RS22170 0.22 -0.9
570,067 - ABIE40_RS22170 0.22 +1.8
570,114 + ABIE40_RS22170 0.27 +0.3
570,114 + ABIE40_RS22170 0.27 +0.8
570,115 - ABIE40_RS22170 0.27 +1.8
570,115 - ABIE40_RS22170 0.27 -0.7
570,140 + ABIE40_RS22170 0.29 -0.0
570,140 + ABIE40_RS22170 0.29 -0.7
570,141 - ABIE40_RS22170 0.29 +0.4
570,141 - ABIE40_RS22170 0.29 -1.0
570,141 - ABIE40_RS22170 0.29 +0.3
570,179 + ABIE40_RS22170 0.33 +0.9
570,179 + ABIE40_RS22170 0.33 +0.8
570,179 + ABIE40_RS22170 0.33 -0.7
570,179 + ABIE40_RS22170 0.33 +0.3
570,179 + ABIE40_RS22170 0.33 -1.6
570,180 - ABIE40_RS22170 0.33 -0.5
570,180 - ABIE40_RS22170 0.33 -1.2
570,262 + ABIE40_RS22170 0.41 +0.1
570,262 + ABIE40_RS22170 0.41 +0.4
570,263 - ABIE40_RS22170 0.41 +0.3
570,263 - ABIE40_RS22170 0.41 +1.2
570,269 + ABIE40_RS22170 0.42 +0.3
570,269 + ABIE40_RS22170 0.42 -0.2
570,269 + ABIE40_RS22170 0.42 -2.0
570,269 + ABIE40_RS22170 0.42 -0.6
570,269 + ABIE40_RS22170 0.42 -0.3
570,270 - ABIE40_RS22170 0.42 +0.5
570,270 - ABIE40_RS22170 0.42 -1.5
570,270 - ABIE40_RS22170 0.42 -0.5
570,317 + ABIE40_RS22170 0.46 -0.6
570,317 + ABIE40_RS22170 0.46 +0.5
570,318 - ABIE40_RS22170 0.46 -2.2
570,339 + ABIE40_RS22170 0.49 -0.7
570,340 - ABIE40_RS22170 0.49 -0.6
570,357 + ABIE40_RS22170 0.50 -1.2
570,358 - ABIE40_RS22170 0.50 +0.4
570,358 - ABIE40_RS22170 0.50 +1.3
570,467 + ABIE40_RS22170 0.61 -1.0
570,467 + ABIE40_RS22170 0.61 -1.2
570,467 + ABIE40_RS22170 0.61 +1.1
570,467 + ABIE40_RS22170 0.61 +1.4
570,467 + ABIE40_RS22170 0.61 +2.8
570,467 + ABIE40_RS22170 0.61 -0.7
570,467 + ABIE40_RS22170 0.61 -1.0
570,467 + ABIE40_RS22170 0.61 -1.0
570,467 + ABIE40_RS22170 0.61 -0.8
570,468 - ABIE40_RS22170 0.61 -0.9
570,468 - ABIE40_RS22170 0.61 +0.0
570,468 - ABIE40_RS22170 0.61 -1.3
570,468 - ABIE40_RS22170 0.61 +0.5
570,473 + ABIE40_RS22170 0.61 +0.6
570,473 + ABIE40_RS22170 0.61 -3.3
570,474 - ABIE40_RS22170 0.62 +0.2
570,474 - ABIE40_RS22170 0.62 -0.5
570,474 - ABIE40_RS22170 0.62 -0.2
570,474 - ABIE40_RS22170 0.62 +1.4
570,476 + ABIE40_RS22170 0.62 -0.7
570,513 + ABIE40_RS22170 0.65 -0.9
570,513 + ABIE40_RS22170 0.65 -1.5
570,513 + ABIE40_RS22170 0.65 -1.2
570,514 - ABIE40_RS22170 0.65 -0.4
570,514 - ABIE40_RS22170 0.65 -1.3
570,514 - ABIE40_RS22170 0.65 -1.1
570,527 + ABIE40_RS22170 0.67 -0.5
570,527 + ABIE40_RS22170 0.67 -2.0
570,673 + ABIE40_RS22170 0.81 +0.8
570,673 + ABIE40_RS22170 0.81 -1.5
570,673 + ABIE40_RS22170 0.81 +1.0
570,673 + ABIE40_RS22170 0.81 -2.0
570,673 + ABIE40_RS22170 0.81 +0.2
570,674 - ABIE40_RS22170 0.81 -0.9
570,674 - ABIE40_RS22170 0.81 -1.9
570,674 - ABIE40_RS22170 0.81 -1.3
570,674 - ABIE40_RS22170 0.81 +0.3
570,674 - ABIE40_RS22170 0.81 +0.1
570,674 - ABIE40_RS22170 0.81 +0.8
570,678 - ABIE40_RS22170 0.81 +0.8
570,738 - ABIE40_RS22170 0.87 +0.5
570,783 + -1.6
570,802 + -0.5
570,802 + -0.5
570,802 + +0.1
570,802 + -1.7
570,803 - +1.4
570,840 + -0.7
570,841 - -0.6
570,903 + -0.5
570,903 + -0.1
570,903 + +0.3
570,904 - +1.5
570,904 - +0.7
570,925 + +0.7
570,944 - +1.3
570,945 + -2.4
570,945 + -0.5
570,946 - -0.6
570,946 - +0.3
570,946 - +1.8
570,946 - -0.1
570,984 + +0.5
571,178 + ABIE40_RS22175 0.16 -1.3
571,178 + ABIE40_RS22175 0.16 +1.6
571,178 + ABIE40_RS22175 0.16 -0.9
571,179 - ABIE40_RS22175 0.16 +1.3
571,179 - ABIE40_RS22175 0.16 -0.5
571,179 - ABIE40_RS22175 0.16 +0.3
571,179 - ABIE40_RS22175 0.16 +0.8
571,280 + ABIE40_RS22175 0.25 +0.8
571,281 - ABIE40_RS22175 0.25 +0.0
571,281 - ABIE40_RS22175 0.25 -0.9
571,281 - ABIE40_RS22175 0.25 -3.4
571,415 - ABIE40_RS22175 0.36 +0.7
571,623 + ABIE40_RS22175 0.53 -0.4
571,689 + ABIE40_RS22175 0.59 +0.8
571,690 - ABIE40_RS22175 0.59 -0.5
571,690 - ABIE40_RS22175 0.59 -0.9
571,755 + ABIE40_RS22175 0.64 -0.1
571,755 + ABIE40_RS22175 0.64 +0.1
571,755 + ABIE40_RS22175 0.64 +2.3
571,755 + ABIE40_RS22175 0.64 +0.3
571,755 + ABIE40_RS22175 0.64 +0.3
571,756 - ABIE40_RS22175 0.64 +0.7
571,756 - ABIE40_RS22175 0.64 +1.2
571,756 - ABIE40_RS22175 0.64 -2.3
571,947 - ABIE40_RS22175 0.80 +0.0
571,947 - ABIE40_RS22175 0.80 +0.7
571,969 + ABIE40_RS22175 0.82 +1.5
571,970 - ABIE40_RS22175 0.82 +0.7
571,970 - ABIE40_RS22175 0.82 -1.4
572,049 + ABIE40_RS22175 0.89 -0.2
572,049 + ABIE40_RS22175 0.89 -0.9
572,049 + ABIE40_RS22175 0.89 -0.3
572,050 - ABIE40_RS22175 0.89 +5.0
572,133 + -1.9
572,133 + +0.4
572,133 + -0.1
572,133 + -2.1
572,133 + +1.1
572,133 + +1.2
572,159 + +0.6
572,159 + -0.2
572,160 - +1.8
572,160 - +0.0
572,160 - +0.6
572,160 - -1.2
572,173 - +3.1
572,268 + -1.2
572,268 + +1.8
572,269 - +0.6
572,271 - -0.7
572,271 - +1.5
572,271 - -1.1
572,271 - +0.8
572,292 + -1.0
572,345 + +1.4
572,345 + -0.3
572,346 - +1.8
572,346 - -2.2
572,346 - +0.4
572,417 + ABIE40_RS22180 0.19 +0.7
572,417 + ABIE40_RS22180 0.19 -1.0
572,418 - ABIE40_RS22180 0.20 +0.0
572,447 + ABIE40_RS22180 0.25 -3.4
572,447 + ABIE40_RS22180 0.25 +0.5
572,514 + ABIE40_RS22180 0.37 +0.1
572,889 + +0.1
573,045 + -2.8
573,045 + -0.1
573,045 + -1.2
573,046 - -0.7
573,141 + +0.3
573,142 - +0.0
573,142 - +0.1
573,142 - -1.2

Or see this region's nucleotide sequence