Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22095 and ABIE40_RS22100 overlap by 4 nucleotides ABIE40_RS22100 and ABIE40_RS22105 are separated by 13 nucleotides ABIE40_RS22105 and ABIE40_RS22110 are separated by 86 nucleotides ABIE40_RS22110 and ABIE40_RS22115 are separated by 47 nucleotides
ABIE40_RS22095: ABIE40_RS22095 - LysR substrate-binding domain-containing protein, at 554,758 to 555,672
_RS22095
ABIE40_RS22100: ABIE40_RS22100 - helix-turn-helix domain-containing protein, at 555,669 to 556,124
_RS22100
ABIE40_RS22105: ABIE40_RS22105 - MarR family transcriptional regulator, at 556,138 to 556,578
_RS22105
ABIE40_RS22110: ABIE40_RS22110 - chloride channel protein, at 556,665 to 558,470
_RS22110
ABIE40_RS22115: ABIE40_RS22115 - ABC-F family ATP-binding cassette domain-containing protein, at 558,518 to 560,050
_RS22115
Position (kb) 556
557
558
559 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 555.862 kb on + strand, within ABIE40_RS22100 at 555.862 kb on + strand, within ABIE40_RS22100 at 556.190 kb on - strand, within ABIE40_RS22105 at 556.258 kb on + strand, within ABIE40_RS22105 at 556.258 kb on + strand, within ABIE40_RS22105 at 556.258 kb on + strand, within ABIE40_RS22105 at 556.258 kb on + strand, within ABIE40_RS22105 at 556.258 kb on + strand, within ABIE40_RS22105 at 556.259 kb on - strand, within ABIE40_RS22105 at 556.259 kb on - strand, within ABIE40_RS22105 at 556.259 kb on - strand, within ABIE40_RS22105 at 556.259 kb on - strand, within ABIE40_RS22105 at 556.259 kb on - strand, within ABIE40_RS22105 at 556.259 kb on - strand, within ABIE40_RS22105 at 556.547 kb on + strand at 556.547 kb on + strand at 556.547 kb on + strand at 556.547 kb on + strand at 556.547 kb on + strand at 556.548 kb on - strand at 556.548 kb on - strand at 556.548 kb on - strand at 557.478 kb on + strand, within ABIE40_RS22110 at 557.478 kb on + strand, within ABIE40_RS22110 at 557.595 kb on + strand, within ABIE40_RS22110 at 557.600 kb on + strand, within ABIE40_RS22110 at 557.601 kb on - strand, within ABIE40_RS22110 at 557.767 kb on + strand, within ABIE40_RS22110 at 557.767 kb on + strand, within ABIE40_RS22110 at 557.767 kb on + strand, within ABIE40_RS22110 at 557.768 kb on - strand, within ABIE40_RS22110 at 557.768 kb on - strand, within ABIE40_RS22110 at 557.768 kb on - strand, within ABIE40_RS22110 at 557.853 kb on + strand, within ABIE40_RS22110 at 557.922 kb on + strand, within ABIE40_RS22110 at 557.922 kb on + strand, within ABIE40_RS22110 at 558.004 kb on - strand, within ABIE40_RS22110 at 558.135 kb on + strand, within ABIE40_RS22110 at 558.135 kb on + strand, within ABIE40_RS22110 at 558.739 kb on - strand, within ABIE40_RS22115 at 558.739 kb on - strand, within ABIE40_RS22115 at 558.739 kb on - strand, within ABIE40_RS22115 at 558.913 kb on + strand, within ABIE40_RS22115 at 558.952 kb on - strand, within ABIE40_RS22115 at 559.159 kb on + strand, within ABIE40_RS22115 at 559.160 kb on - strand, within ABIE40_RS22115 at 559.319 kb on - strand, within ABIE40_RS22115 at 559.319 kb on - strand, within ABIE40_RS22115 at 559.319 kb on - strand, within ABIE40_RS22115 at 559.377 kb on + strand, within ABIE40_RS22115 at 559.378 kb on - strand, within ABIE40_RS22115 at 559.431 kb on + strand, within ABIE40_RS22115 at 559.431 kb on + strand, within ABIE40_RS22115
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 555,862 + ABIE40_RS22100 0.42 -2.6 555,862 + ABIE40_RS22100 0.42 -0.2 556,190 - ABIE40_RS22105 0.12 +0.6 556,258 + ABIE40_RS22105 0.27 +0.8 556,258 + ABIE40_RS22105 0.27 +0.2 556,258 + ABIE40_RS22105 0.27 +1.6 556,258 + ABIE40_RS22105 0.27 +0.3 556,258 + ABIE40_RS22105 0.27 -0.7 556,259 - ABIE40_RS22105 0.27 +0.8 556,259 - ABIE40_RS22105 0.27 +0.5 556,259 - ABIE40_RS22105 0.27 +0.5 556,259 - ABIE40_RS22105 0.27 -1.2 556,259 - ABIE40_RS22105 0.27 +0.5 556,259 - ABIE40_RS22105 0.27 +3.2 556,547 + +0.2 556,547 + +0.3 556,547 + +0.8 556,547 + -1.7 556,547 + -0.5 556,548 - -0.3 556,548 - -1.6 556,548 - +0.1 557,478 + ABIE40_RS22110 0.45 +0.0 557,478 + ABIE40_RS22110 0.45 -0.4 557,595 + ABIE40_RS22110 0.51 -0.7 557,600 + ABIE40_RS22110 0.52 -0.3 557,601 - ABIE40_RS22110 0.52 +0.3 557,767 + ABIE40_RS22110 0.61 -1.2 557,767 + ABIE40_RS22110 0.61 -0.0 557,767 + ABIE40_RS22110 0.61 -1.9 557,768 - ABIE40_RS22110 0.61 +0.8 557,768 - ABIE40_RS22110 0.61 -0.2 557,768 - ABIE40_RS22110 0.61 +0.5 557,853 + ABIE40_RS22110 0.66 -3.4 557,922 + ABIE40_RS22110 0.70 -0.4 557,922 + ABIE40_RS22110 0.70 -0.7 558,004 - ABIE40_RS22110 0.74 -0.2 558,135 + ABIE40_RS22110 0.81 -1.3 558,135 + ABIE40_RS22110 0.81 -0.7 558,739 - ABIE40_RS22115 0.14 -0.1 558,739 - ABIE40_RS22115 0.14 +1.5 558,739 - ABIE40_RS22115 0.14 -0.7 558,913 + ABIE40_RS22115 0.26 -0.2 558,952 - ABIE40_RS22115 0.28 -0.7 559,159 + ABIE40_RS22115 0.42 +1.8 559,160 - ABIE40_RS22115 0.42 +0.1 559,319 - ABIE40_RS22115 0.52 +0.8 559,319 - ABIE40_RS22115 0.52 -2.2 559,319 - ABIE40_RS22115 0.52 -0.6 559,377 + ABIE40_RS22115 0.56 +1.8 559,378 - ABIE40_RS22115 0.56 +0.7 559,431 + ABIE40_RS22115 0.60 -1.5 559,431 + ABIE40_RS22115 0.60 +0.4
Or see this region's nucleotide sequence