Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21760 and ABIE40_RS21765 are separated by 112 nucleotides ABIE40_RS21765 and ABIE40_RS21770 are separated by 82 nucleotides ABIE40_RS21770 and ABIE40_RS21775 overlap by 4 nucleotides ABIE40_RS21775 and ABIE40_RS21780 overlap by 1 nucleotides
ABIE40_RS21760: ABIE40_RS21760 - VOC family protein, at 475,306 to 475,704
_RS21760
ABIE40_RS21765: ABIE40_RS21765 - DUF2934 domain-containing protein, at 475,817 to 476,086
_RS21765
ABIE40_RS21770: ABIE40_RS21770 - cytochrome c, at 476,169 to 477,566
_RS21770
ABIE40_RS21775: ABIE40_RS21775 - (2Fe-2S)-binding protein, at 477,563 to 478,057
_RS21775
ABIE40_RS21780: ABIE40_RS21780 - molybdopterin cofactor-binding domain-containing protein, at 478,057 to 480,297
_RS21780
Position (kb) 476
477
478 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 475.217 kb on + strand at 475.252 kb on - strand at 475.278 kb on + strand at 475.279 kb on - strand at 475.279 kb on - strand at 475.279 kb on - strand at 475.279 kb on - strand at 475.370 kb on - strand, within ABIE40_RS21760 at 475.370 kb on - strand, within ABIE40_RS21760 at 475.370 kb on - strand, within ABIE40_RS21760 at 475.546 kb on + strand, within ABIE40_RS21760 at 475.547 kb on - strand, within ABIE40_RS21760 at 475.621 kb on + strand, within ABIE40_RS21760 at 475.621 kb on + strand, within ABIE40_RS21760 at 475.621 kb on + strand, within ABIE40_RS21760 at 475.621 kb on + strand, within ABIE40_RS21760 at 475.621 kb on + strand, within ABIE40_RS21760 at 475.621 kb on + strand, within ABIE40_RS21760 at 475.621 kb on + strand, within ABIE40_RS21760 at 475.621 kb on + strand, within ABIE40_RS21760 at 475.622 kb on - strand, within ABIE40_RS21760 at 475.622 kb on - strand, within ABIE40_RS21760 at 475.622 kb on - strand, within ABIE40_RS21760 at 475.622 kb on - strand, within ABIE40_RS21760 at 475.622 kb on - strand, within ABIE40_RS21760 at 475.622 kb on - strand, within ABIE40_RS21760 at 475.622 kb on - strand, within ABIE40_RS21760 at 475.737 kb on + strand at 475.749 kb on + strand at 475.760 kb on + strand at 475.760 kb on + strand at 475.786 kb on + strand at 475.787 kb on - strand at 475.787 kb on - strand at 475.791 kb on + strand at 475.791 kb on + strand at 475.800 kb on + strand at 475.814 kb on - strand at 475.825 kb on + strand at 475.826 kb on - strand at 476.096 kb on + strand at 476.097 kb on - strand at 476.097 kb on - strand at 476.110 kb on + strand at 476.343 kb on - strand, within ABIE40_RS21770 at 476.354 kb on + strand, within ABIE40_RS21770 at 476.354 kb on + strand, within ABIE40_RS21770 at 476.354 kb on + strand, within ABIE40_RS21770 at 476.355 kb on - strand, within ABIE40_RS21770 at 476.355 kb on - strand, within ABIE40_RS21770 at 476.355 kb on - strand, within ABIE40_RS21770 at 476.355 kb on - strand, within ABIE40_RS21770 at 476.418 kb on + strand, within ABIE40_RS21770 at 476.418 kb on + strand, within ABIE40_RS21770 at 476.419 kb on - strand, within ABIE40_RS21770 at 476.419 kb on - strand, within ABIE40_RS21770 at 476.419 kb on - strand, within ABIE40_RS21770 at 476.430 kb on - strand, within ABIE40_RS21770 at 476.430 kb on - strand, within ABIE40_RS21770 at 476.430 kb on - strand, within ABIE40_RS21770 at 476.430 kb on - strand, within ABIE40_RS21770 at 476.542 kb on - strand, within ABIE40_RS21770 at 476.574 kb on - strand, within ABIE40_RS21770 at 476.586 kb on + strand, within ABIE40_RS21770 at 476.586 kb on + strand, within ABIE40_RS21770 at 476.586 kb on + strand, within ABIE40_RS21770 at 476.586 kb on + strand, within ABIE40_RS21770 at 476.587 kb on - strand, within ABIE40_RS21770 at 476.587 kb on - strand, within ABIE40_RS21770 at 476.587 kb on - strand, within ABIE40_RS21770 at 476.592 kb on + strand, within ABIE40_RS21770 at 476.592 kb on + strand, within ABIE40_RS21770 at 476.593 kb on - strand, within ABIE40_RS21770 at 476.669 kb on - strand, within ABIE40_RS21770 at 476.755 kb on - strand, within ABIE40_RS21770 at 476.868 kb on + strand, within ABIE40_RS21770 at 476.869 kb on - strand, within ABIE40_RS21770 at 476.928 kb on + strand, within ABIE40_RS21770 at 476.928 kb on + strand, within ABIE40_RS21770 at 476.928 kb on + strand, within ABIE40_RS21770 at 476.928 kb on + strand, within ABIE40_RS21770 at 476.929 kb on - strand, within ABIE40_RS21770 at 476.929 kb on - strand, within ABIE40_RS21770 at 476.929 kb on - strand, within ABIE40_RS21770 at 476.929 kb on - strand, within ABIE40_RS21770 at 476.929 kb on - strand, within ABIE40_RS21770 at 476.943 kb on + strand, within ABIE40_RS21770 at 477.039 kb on + strand, within ABIE40_RS21770 at 477.039 kb on + strand, within ABIE40_RS21770 at 477.039 kb on + strand, within ABIE40_RS21770 at 477.040 kb on - strand, within ABIE40_RS21770 at 477.040 kb on - strand, within ABIE40_RS21770 at 477.195 kb on + strand, within ABIE40_RS21770 at 477.196 kb on - strand, within ABIE40_RS21770 at 477.492 kb on + strand at 477.629 kb on + strand, within ABIE40_RS21775 at 477.629 kb on + strand, within ABIE40_RS21775 at 477.629 kb on + strand, within ABIE40_RS21775 at 477.629 kb on + strand, within ABIE40_RS21775 at 477.629 kb on + strand, within ABIE40_RS21775 at 477.629 kb on + strand, within ABIE40_RS21775 at 477.629 kb on + strand, within ABIE40_RS21775 at 477.629 kb on + strand, within ABIE40_RS21775 at 477.629 kb on + strand, within ABIE40_RS21775 at 477.630 kb on - strand, within ABIE40_RS21775 at 477.630 kb on - strand, within ABIE40_RS21775 at 477.630 kb on - strand, within ABIE40_RS21775 at 477.630 kb on - strand, within ABIE40_RS21775 at 477.630 kb on - strand, within ABIE40_RS21775 at 477.630 kb on - strand, within ABIE40_RS21775 at 477.630 kb on - strand, within ABIE40_RS21775 at 477.630 kb on - strand, within ABIE40_RS21775 at 477.630 kb on - strand, within ABIE40_RS21775 at 477.630 kb on - strand, within ABIE40_RS21775 at 477.630 kb on - strand, within ABIE40_RS21775 at 477.857 kb on + strand, within ABIE40_RS21775 at 477.862 kb on + strand, within ABIE40_RS21775 at 477.863 kb on - strand, within ABIE40_RS21775 at 477.973 kb on + strand, within ABIE40_RS21775 at 477.973 kb on + strand, within ABIE40_RS21775 at 477.973 kb on + strand, within ABIE40_RS21775 at 477.973 kb on + strand, within ABIE40_RS21775 at 477.973 kb on + strand, within ABIE40_RS21775 at 477.973 kb on + strand, within ABIE40_RS21775 at 477.973 kb on + strand, within ABIE40_RS21775 at 477.974 kb on - strand, within ABIE40_RS21775 at 477.974 kb on - strand, within ABIE40_RS21775 at 477.974 kb on - strand, within ABIE40_RS21775 at 477.974 kb on - strand, within ABIE40_RS21775 at 477.974 kb on - strand, within ABIE40_RS21775 at 478.062 kb on + strand at 478.062 kb on + strand at 478.062 kb on + strand at 478.063 kb on - strand at 478.063 kb on - strand at 478.063 kb on - strand at 478.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 475,217 + -1.0 475,252 - +1.6 475,278 + -0.5 475,279 - +1.6 475,279 - -0.9 475,279 - -0.6 475,279 - +0.4 475,370 - ABIE40_RS21760 0.16 -0.5 475,370 - ABIE40_RS21760 0.16 -2.2 475,370 - ABIE40_RS21760 0.16 -1.8 475,546 + ABIE40_RS21760 0.60 +1.4 475,547 - ABIE40_RS21760 0.60 +2.0 475,621 + ABIE40_RS21760 0.79 -0.2 475,621 + ABIE40_RS21760 0.79 +1.3 475,621 + ABIE40_RS21760 0.79 +0.2 475,621 + ABIE40_RS21760 0.79 +0.9 475,621 + ABIE40_RS21760 0.79 +1.1 475,621 + ABIE40_RS21760 0.79 +2.3 475,621 + ABIE40_RS21760 0.79 -2.3 475,621 + ABIE40_RS21760 0.79 -1.3 475,622 - ABIE40_RS21760 0.79 +0.6 475,622 - ABIE40_RS21760 0.79 +0.9 475,622 - ABIE40_RS21760 0.79 +0.2 475,622 - ABIE40_RS21760 0.79 +0.5 475,622 - ABIE40_RS21760 0.79 -0.2 475,622 - ABIE40_RS21760 0.79 -0.0 475,622 - ABIE40_RS21760 0.79 -1.5 475,737 + +2.4 475,749 + +0.2 475,760 + -0.4 475,760 + -4.4 475,786 + -2.5 475,787 - -2.7 475,787 - -0.8 475,791 + -0.5 475,791 + -0.2 475,800 + -2.0 475,814 - -0.0 475,825 + +0.6 475,826 - -2.0 476,096 + +0.5 476,097 - -0.2 476,097 - -2.5 476,110 + +0.5 476,343 - ABIE40_RS21770 0.12 -0.1 476,354 + ABIE40_RS21770 0.13 -1.0 476,354 + ABIE40_RS21770 0.13 -1.3 476,354 + ABIE40_RS21770 0.13 -0.2 476,355 - ABIE40_RS21770 0.13 -2.6 476,355 - ABIE40_RS21770 0.13 -1.0 476,355 - ABIE40_RS21770 0.13 +0.3 476,355 - ABIE40_RS21770 0.13 +0.2 476,418 + ABIE40_RS21770 0.18 -0.9 476,418 + ABIE40_RS21770 0.18 -0.8 476,419 - ABIE40_RS21770 0.18 -2.8 476,419 - ABIE40_RS21770 0.18 +0.6 476,419 - ABIE40_RS21770 0.18 -1.6 476,430 - ABIE40_RS21770 0.19 +2.4 476,430 - ABIE40_RS21770 0.19 -0.2 476,430 - ABIE40_RS21770 0.19 +1.3 476,430 - ABIE40_RS21770 0.19 -0.6 476,542 - ABIE40_RS21770 0.27 -0.9 476,574 - ABIE40_RS21770 0.29 +1.6 476,586 + ABIE40_RS21770 0.30 +2.3 476,586 + ABIE40_RS21770 0.30 -0.8 476,586 + ABIE40_RS21770 0.30 -2.7 476,586 + ABIE40_RS21770 0.30 +3.1 476,587 - ABIE40_RS21770 0.30 -2.3 476,587 - ABIE40_RS21770 0.30 +0.1 476,587 - ABIE40_RS21770 0.30 +0.1 476,592 + ABIE40_RS21770 0.30 -1.5 476,592 + ABIE40_RS21770 0.30 +0.6 476,593 - ABIE40_RS21770 0.30 +1.3 476,669 - ABIE40_RS21770 0.36 -1.5 476,755 - ABIE40_RS21770 0.42 -3.2 476,868 + ABIE40_RS21770 0.50 +0.3 476,869 - ABIE40_RS21770 0.50 +2.0 476,928 + ABIE40_RS21770 0.54 -1.6 476,928 + ABIE40_RS21770 0.54 -0.7 476,928 + ABIE40_RS21770 0.54 +1.2 476,928 + ABIE40_RS21770 0.54 -0.7 476,929 - ABIE40_RS21770 0.54 -2.7 476,929 - ABIE40_RS21770 0.54 +1.1 476,929 - ABIE40_RS21770 0.54 +0.3 476,929 - ABIE40_RS21770 0.54 -1.9 476,929 - ABIE40_RS21770 0.54 -0.8 476,943 + ABIE40_RS21770 0.55 -0.4 477,039 + ABIE40_RS21770 0.62 +0.3 477,039 + ABIE40_RS21770 0.62 +0.8 477,039 + ABIE40_RS21770 0.62 +0.7 477,040 - ABIE40_RS21770 0.62 -0.2 477,040 - ABIE40_RS21770 0.62 -1.2 477,195 + ABIE40_RS21770 0.73 -1.0 477,196 - ABIE40_RS21770 0.73 +2.2 477,492 + +0.7 477,629 + ABIE40_RS21775 0.13 +0.5 477,629 + ABIE40_RS21775 0.13 -1.5 477,629 + ABIE40_RS21775 0.13 -0.5 477,629 + ABIE40_RS21775 0.13 -1.3 477,629 + ABIE40_RS21775 0.13 -0.3 477,629 + ABIE40_RS21775 0.13 +0.4 477,629 + ABIE40_RS21775 0.13 -0.9 477,629 + ABIE40_RS21775 0.13 +0.1 477,629 + ABIE40_RS21775 0.13 +1.8 477,630 - ABIE40_RS21775 0.14 +1.8 477,630 - ABIE40_RS21775 0.14 +0.4 477,630 - ABIE40_RS21775 0.14 +0.5 477,630 - ABIE40_RS21775 0.14 -0.0 477,630 - ABIE40_RS21775 0.14 -2.5 477,630 - ABIE40_RS21775 0.14 +0.4 477,630 - ABIE40_RS21775 0.14 -0.3 477,630 - ABIE40_RS21775 0.14 +0.2 477,630 - ABIE40_RS21775 0.14 +0.3 477,630 - ABIE40_RS21775 0.14 -1.5 477,630 - ABIE40_RS21775 0.14 +0.7 477,857 + ABIE40_RS21775 0.59 +0.1 477,862 + ABIE40_RS21775 0.60 -0.3 477,863 - ABIE40_RS21775 0.61 +0.3 477,973 + ABIE40_RS21775 0.83 +0.2 477,973 + ABIE40_RS21775 0.83 +0.3 477,973 + ABIE40_RS21775 0.83 -0.1 477,973 + ABIE40_RS21775 0.83 -0.5 477,973 + ABIE40_RS21775 0.83 -0.1 477,973 + ABIE40_RS21775 0.83 -1.5 477,973 + ABIE40_RS21775 0.83 +0.4 477,974 - ABIE40_RS21775 0.83 +1.8 477,974 - ABIE40_RS21775 0.83 +0.2 477,974 - ABIE40_RS21775 0.83 -0.2 477,974 - ABIE40_RS21775 0.83 +0.3 477,974 - ABIE40_RS21775 0.83 -0.2 478,062 + -1.5 478,062 + -0.8 478,062 + -0.5 478,063 - +1.2 478,063 - -1.0 478,063 - -1.1 478,063 - +0.0
Or see this region's nucleotide sequence