Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21150

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21140 and ABIE40_RS21145 are separated by 27 nucleotidesABIE40_RS21145 and ABIE40_RS21150 are separated by 22 nucleotidesABIE40_RS21150 and ABIE40_RS21155 are separated by 21 nucleotides ABIE40_RS21140: ABIE40_RS21140 - metallophosphoesterase, at 342,903 to 344,057 _RS21140 ABIE40_RS21145: ABIE40_RS21145 - hypothetical protein, at 344,085 to 344,969 _RS21145 ABIE40_RS21150: ABIE40_RS21150 - threonine/serine dehydratase, at 344,992 to 345,939 _RS21150 ABIE40_RS21155: ABIE40_RS21155 - ornithine cyclodeaminase family protein, at 345,961 to 346,950 _RS21155 Position (kb) 344 345 346Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 344.105 kb on + strandat 344.105 kb on + strandat 344.105 kb on + strandat 344.105 kb on + strandat 344.105 kb on + strandat 344.106 kb on - strandat 344.106 kb on - strandat 344.106 kb on - strandat 344.106 kb on - strandat 344.106 kb on - strandat 344.106 kb on - strandat 344.194 kb on + strand, within ABIE40_RS21145at 344.194 kb on + strand, within ABIE40_RS21145at 344.194 kb on + strand, within ABIE40_RS21145at 344.194 kb on + strand, within ABIE40_RS21145at 344.194 kb on + strand, within ABIE40_RS21145at 344.194 kb on + strand, within ABIE40_RS21145at 344.194 kb on + strand, within ABIE40_RS21145at 344.194 kb on + strand, within ABIE40_RS21145at 344.195 kb on - strand, within ABIE40_RS21145at 344.195 kb on - strand, within ABIE40_RS21145at 344.195 kb on - strand, within ABIE40_RS21145at 344.195 kb on - strand, within ABIE40_RS21145at 344.398 kb on + strand, within ABIE40_RS21145at 344.398 kb on + strand, within ABIE40_RS21145at 344.402 kb on + strand, within ABIE40_RS21145at 344.503 kb on + strand, within ABIE40_RS21145at 344.504 kb on - strand, within ABIE40_RS21145at 344.602 kb on - strand, within ABIE40_RS21145at 344.969 kb on + strandat 344.969 kb on + strandat 344.970 kb on - strandat 344.970 kb on - strandat 344.970 kb on - strandat 344.985 kb on + strandat 344.988 kb on + strandat 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.314 kb on + strand, within ABIE40_RS21150at 345.315 kb on - strand, within ABIE40_RS21150at 345.315 kb on - strand, within ABIE40_RS21150at 345.315 kb on - strand, within ABIE40_RS21150at 345.315 kb on - strand, within ABIE40_RS21150at 345.315 kb on - strand, within ABIE40_RS21150at 345.315 kb on - strand, within ABIE40_RS21150at 345.315 kb on - strand, within ABIE40_RS21150at 345.315 kb on - strand, within ABIE40_RS21150at 345.315 kb on - strand, within ABIE40_RS21150at 345.315 kb on - strand, within ABIE40_RS21150at 345.315 kb on - strand, within ABIE40_RS21150at 345.432 kb on + strand, within ABIE40_RS21150at 345.433 kb on - strand, within ABIE40_RS21150at 345.506 kb on + strand, within ABIE40_RS21150at 345.516 kb on + strand, within ABIE40_RS21150at 345.516 kb on + strand, within ABIE40_RS21150at 345.516 kb on + strand, within ABIE40_RS21150at 345.517 kb on - strand, within ABIE40_RS21150at 345.517 kb on - strand, within ABIE40_RS21150at 345.517 kb on - strand, within ABIE40_RS21150at 345.517 kb on - strand, within ABIE40_RS21150at 345.517 kb on - strand, within ABIE40_RS21150at 345.517 kb on - strand, within ABIE40_RS21150at 345.518 kb on - strand, within ABIE40_RS21150at 345.519 kb on - strand, within ABIE40_RS21150at 345.519 kb on - strand, within ABIE40_RS21150at 345.519 kb on - strand, within ABIE40_RS21150at 345.519 kb on - strand, within ABIE40_RS21150at 345.519 kb on - strand, within ABIE40_RS21150at 345.519 kb on - strand, within ABIE40_RS21150at 345.519 kb on - strand, within ABIE40_RS21150at 345.519 kb on - strand, within ABIE40_RS21150at 345.519 kb on - strand, within ABIE40_RS21150at 345.519 kb on - strand, within ABIE40_RS21150at 345.519 kb on - strand, within ABIE40_RS21150at 345.602 kb on + strand, within ABIE40_RS21150at 345.602 kb on + strand, within ABIE40_RS21150at 345.603 kb on - strand, within ABIE40_RS21150at 345.686 kb on + strand, within ABIE40_RS21150at 345.791 kb on + strand, within ABIE40_RS21150at 345.791 kb on + strand, within ABIE40_RS21150at 345.791 kb on + strand, within ABIE40_RS21150at 345.792 kb on - strand, within ABIE40_RS21150at 345.792 kb on - strand, within ABIE40_RS21150at 345.827 kb on + strand, within ABIE40_RS21150at 345.827 kb on + strand, within ABIE40_RS21150at 345.828 kb on - strand, within ABIE40_RS21150at 345.828 kb on - strand, within ABIE40_RS21150at 345.828 kb on - strand, within ABIE40_RS21150at 345.962 kb on + strandat 346.007 kb on + strandat 346.008 kb on + strandat 346.008 kb on + strandat 346.008 kb on + strandat 346.008 kb on + strandat 346.008 kb on + strandat 346.008 kb on + strandat 346.008 kb on + strandat 346.009 kb on - strandat 346.009 kb on - strandat 346.010 kb on + strandat 346.010 kb on + strandat 346.010 kb on + strandat 346.010 kb on + strandat 346.010 kb on + strandat 346.011 kb on - strandat 346.011 kb on - strandat 346.017 kb on - strandat 346.017 kb on - strandat 346.017 kb on - strandat 346.017 kb on - strandat 346.061 kb on + strand, within ABIE40_RS21155at 346.061 kb on + strand, within ABIE40_RS21155at 346.061 kb on + strand, within ABIE40_RS21155at 346.062 kb on - strand, within ABIE40_RS21155at 346.134 kb on + strand, within ABIE40_RS21155at 346.134 kb on + strand, within ABIE40_RS21155at 346.134 kb on + strand, within ABIE40_RS21155at 346.134 kb on + strand, within ABIE40_RS21155at 346.135 kb on - strand, within ABIE40_RS21155at 346.135 kb on - strand, within ABIE40_RS21155at 346.135 kb on - strand, within ABIE40_RS21155at 346.135 kb on - strand, within ABIE40_RS21155at 346.208 kb on + strand, within ABIE40_RS21155at 346.208 kb on + strand, within ABIE40_RS21155at 346.208 kb on + strand, within ABIE40_RS21155at 346.208 kb on + strand, within ABIE40_RS21155at 346.209 kb on - strand, within ABIE40_RS21155at 346.209 kb on - strand, within ABIE40_RS21155at 346.346 kb on - strand, within ABIE40_RS21155

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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344,105 + +1.5
344,105 + +0.4
344,105 + -1.4
344,105 + -1.0
344,105 + -2.2
344,106 - -0.6
344,106 - +0.1
344,106 - -0.3
344,106 - +1.9
344,106 - +0.5
344,106 - -0.3
344,194 + ABIE40_RS21145 0.12 +0.2
344,194 + ABIE40_RS21145 0.12 -0.1
344,194 + ABIE40_RS21145 0.12 -0.6
344,194 + ABIE40_RS21145 0.12 -0.0
344,194 + ABIE40_RS21145 0.12 +0.5
344,194 + ABIE40_RS21145 0.12 -2.2
344,194 + ABIE40_RS21145 0.12 +0.6
344,194 + ABIE40_RS21145 0.12 -0.2
344,195 - ABIE40_RS21145 0.12 +0.3
344,195 - ABIE40_RS21145 0.12 +0.0
344,195 - ABIE40_RS21145 0.12 -0.5
344,195 - ABIE40_RS21145 0.12 -0.2
344,398 + ABIE40_RS21145 0.35 +0.6
344,398 + ABIE40_RS21145 0.35 -0.5
344,402 + ABIE40_RS21145 0.36 -0.9
344,503 + ABIE40_RS21145 0.47 -0.0
344,504 - ABIE40_RS21145 0.47 +1.8
344,602 - ABIE40_RS21145 0.58 -0.1
344,969 + +0.0
344,969 + -0.8
344,970 - +0.4
344,970 - -0.8
344,970 - +0.1
344,985 + +3.0
344,988 + +0.8
345,314 + ABIE40_RS21150 0.34 +1.2
345,314 + ABIE40_RS21150 0.34 +0.6
345,314 + ABIE40_RS21150 0.34 -0.5
345,314 + ABIE40_RS21150 0.34 -0.1
345,314 + ABIE40_RS21150 0.34 +0.4
345,314 + ABIE40_RS21150 0.34 -0.3
345,314 + ABIE40_RS21150 0.34 -0.0
345,314 + ABIE40_RS21150 0.34 +1.8
345,314 + ABIE40_RS21150 0.34 +0.8
345,314 + ABIE40_RS21150 0.34 +2.0
345,314 + ABIE40_RS21150 0.34 +0.6
345,314 + ABIE40_RS21150 0.34 +2.5
345,314 + ABIE40_RS21150 0.34 -2.3
345,314 + ABIE40_RS21150 0.34 -0.2
345,314 + ABIE40_RS21150 0.34 -1.2
345,315 - ABIE40_RS21150 0.34 +0.8
345,315 - ABIE40_RS21150 0.34 +1.8
345,315 - ABIE40_RS21150 0.34 +0.0
345,315 - ABIE40_RS21150 0.34 +2.4
345,315 - ABIE40_RS21150 0.34 +0.1
345,315 - ABIE40_RS21150 0.34 +2.4
345,315 - ABIE40_RS21150 0.34 -0.8
345,315 - ABIE40_RS21150 0.34 +1.0
345,315 - ABIE40_RS21150 0.34 +1.1
345,315 - ABIE40_RS21150 0.34 +0.6
345,315 - ABIE40_RS21150 0.34 +0.0
345,432 + ABIE40_RS21150 0.46 +0.5
345,433 - ABIE40_RS21150 0.47 -2.7
345,506 + ABIE40_RS21150 0.54 +2.6
345,516 + ABIE40_RS21150 0.55 +1.1
345,516 + ABIE40_RS21150 0.55 +1.1
345,516 + ABIE40_RS21150 0.55 -1.1
345,517 - ABIE40_RS21150 0.55 -1.2
345,517 - ABIE40_RS21150 0.55 -0.6
345,517 - ABIE40_RS21150 0.55 -0.2
345,517 - ABIE40_RS21150 0.55 +0.4
345,517 - ABIE40_RS21150 0.55 +0.2
345,517 - ABIE40_RS21150 0.55 -0.6
345,518 - ABIE40_RS21150 0.55 -0.3
345,519 - ABIE40_RS21150 0.56 -0.3
345,519 - ABIE40_RS21150 0.56 -0.1
345,519 - ABIE40_RS21150 0.56 -0.5
345,519 - ABIE40_RS21150 0.56 +0.8
345,519 - ABIE40_RS21150 0.56 -1.4
345,519 - ABIE40_RS21150 0.56 -1.3
345,519 - ABIE40_RS21150 0.56 -0.5
345,519 - ABIE40_RS21150 0.56 -0.8
345,519 - ABIE40_RS21150 0.56 +0.5
345,519 - ABIE40_RS21150 0.56 -0.3
345,519 - ABIE40_RS21150 0.56 -1.5
345,602 + ABIE40_RS21150 0.64 -0.2
345,602 + ABIE40_RS21150 0.64 -0.4
345,603 - ABIE40_RS21150 0.64 +0.3
345,686 + ABIE40_RS21150 0.73 +0.1
345,791 + ABIE40_RS21150 0.84 +1.2
345,791 + ABIE40_RS21150 0.84 -0.1
345,791 + ABIE40_RS21150 0.84 +1.8
345,792 - ABIE40_RS21150 0.84 -0.4
345,792 - ABIE40_RS21150 0.84 -3.1
345,827 + ABIE40_RS21150 0.88 -0.1
345,827 + ABIE40_RS21150 0.88 +0.6
345,828 - ABIE40_RS21150 0.88 -0.0
345,828 - ABIE40_RS21150 0.88 -2.6
345,828 - ABIE40_RS21150 0.88 +0.1
345,962 + -2.2
346,007 + -0.2
346,008 + +0.0
346,008 + -0.5
346,008 + -1.0
346,008 + +0.2
346,008 + +1.6
346,008 + +0.2
346,008 + -0.9
346,009 - -1.2
346,009 - -1.5
346,010 + -0.1
346,010 + -0.3
346,010 + +0.2
346,010 + +0.7
346,010 + +0.2
346,011 - -0.2
346,011 - -0.9
346,017 - -0.2
346,017 - -0.2
346,017 - -2.3
346,017 - +2.7
346,061 + ABIE40_RS21155 0.10 -1.3
346,061 + ABIE40_RS21155 0.10 -1.1
346,061 + ABIE40_RS21155 0.10 +0.4
346,062 - ABIE40_RS21155 0.10 -0.2
346,134 + ABIE40_RS21155 0.17 -0.8
346,134 + ABIE40_RS21155 0.17 -0.8
346,134 + ABIE40_RS21155 0.17 +0.4
346,134 + ABIE40_RS21155 0.17 -0.4
346,135 - ABIE40_RS21155 0.18 -0.1
346,135 - ABIE40_RS21155 0.18 +0.4
346,135 - ABIE40_RS21155 0.18 +0.2
346,135 - ABIE40_RS21155 0.18 +0.2
346,208 + ABIE40_RS21155 0.25 +1.1
346,208 + ABIE40_RS21155 0.25 +0.9
346,208 + ABIE40_RS21155 0.25 -0.2
346,208 + ABIE40_RS21155 0.25 +1.8
346,209 - ABIE40_RS21155 0.25 +0.5
346,209 - ABIE40_RS21155 0.25 +0.3
346,346 - ABIE40_RS21155 0.39 -0.5

Or see this region's nucleotide sequence