Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS16180

Experiment: R2A no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A no stress control
3,202,245	-		ABIE40_RS16175	0.52	+0.1
3,202,529	+		ABIE40_RS16175	0.71	-2.3
3,202,629	-		ABIE40_RS16175	0.77	-0.3
3,202,947	+				-0.5
3,202,947	+				-2.3
3,202,948	-				+0.4
3,202,948	-				+0.4
3,202,975	+				-0.7
3,202,976	-				-1.3
3,202,976	-				+0.3
3,203,010	+				+0.5
3,203,010	+				-0.2
3,203,010	+				+0.8
3,203,010	+				-2.7
3,203,011	-				+0.5
3,203,057	-				+1.8
3,203,151	+				-0.9
3,203,152	-				+0.8
3,203,152	-				-4.2
3,203,152	-				-0.8
3,203,223	+				-3.3
3,203,302	+				-2.2
3,203,302	+				-2.6
3,203,303	-				-2.2
3,203,449	+		ABIE40_RS16180	0.14	-2.1
3,203,449	+		ABIE40_RS16180	0.14	-1.7
3,203,450	-		ABIE40_RS16180	0.14	+3.4
3,203,450	-		ABIE40_RS16180	0.14	-1.3
3,203,450	-		ABIE40_RS16180	0.14	+0.4
3,203,503	+		ABIE40_RS16180	0.17	-2.5
3,203,503	+		ABIE40_RS16180	0.17	-1.4
3,203,503	+		ABIE40_RS16180	0.17	-0.1
3,203,503	+		ABIE40_RS16180	0.17	-3.2
3,203,504	-		ABIE40_RS16180	0.17	-3.1
3,203,504	-		ABIE40_RS16180	0.17	-1.3
3,203,504	-		ABIE40_RS16180	0.17	+1.8
3,203,504	-		ABIE40_RS16180	0.17	-3.0
3,203,514	+		ABIE40_RS16180	0.17	-1.7
3,203,542	+		ABIE40_RS16180	0.19	-1.5
3,203,542	+		ABIE40_RS16180	0.19	-2.3
3,203,543	-		ABIE40_RS16180	0.19	+0.2
3,203,543	-		ABIE40_RS16180	0.19	+0.2
3,203,543	-		ABIE40_RS16180	0.19	-1.3
3,203,571	-		ABIE40_RS16180	0.20	-2.3
3,203,572	+		ABIE40_RS16180	0.20	-0.8
3,203,708	-		ABIE40_RS16180	0.28	+0.2
3,203,810	-		ABIE40_RS16180	0.33	-1.2
3,203,925	+		ABIE40_RS16180	0.39	-1.3
3,203,952	+		ABIE40_RS16180	0.41	-0.2
3,203,952	+		ABIE40_RS16180	0.41	-3.8
3,203,952	+		ABIE40_RS16180	0.41	-2.9
3,203,952	+		ABIE40_RS16180	0.41	-0.8
3,203,952	+		ABIE40_RS16180	0.41	-2.9
3,203,953	-		ABIE40_RS16180	0.41	-4.0
3,203,953	-		ABIE40_RS16180	0.41	-2.6
3,203,953	-		ABIE40_RS16180	0.41	-0.4
3,203,953	-		ABIE40_RS16180	0.41	-1.5
3,204,082	+		ABIE40_RS16180	0.48	-1.3
3,204,082	+		ABIE40_RS16180	0.48	-2.5
3,204,083	-		ABIE40_RS16180	0.48	+0.0
3,204,083	-		ABIE40_RS16180	0.48	-0.6
3,204,103	+		ABIE40_RS16180	0.49	-2.3
3,204,103	+		ABIE40_RS16180	0.49	-0.3
3,204,104	-		ABIE40_RS16180	0.49	+0.1
3,204,104	-		ABIE40_RS16180	0.49	-0.1
3,204,106	+		ABIE40_RS16180	0.49	-0.1
3,204,106	+		ABIE40_RS16180	0.49	-0.1
3,204,106	+		ABIE40_RS16180	0.49	-2.4
3,204,106	+		ABIE40_RS16180	0.49	-2.6
3,204,107	-		ABIE40_RS16180	0.49	+0.5
3,204,107	-		ABIE40_RS16180	0.49	-1.0
3,204,107	-		ABIE40_RS16180	0.49	-3.4
3,204,364	+		ABIE40_RS16180	0.63	-1.1
3,204,364	+		ABIE40_RS16180	0.63	-2.5
3,204,364	+		ABIE40_RS16180	0.63	-2.6
3,204,364	+		ABIE40_RS16180	0.63	-1.8
3,204,364	+		ABIE40_RS16180	0.63	-2.0
3,204,364	+		ABIE40_RS16180	0.63	-2.7
3,204,364	+		ABIE40_RS16180	0.63	-0.8
3,204,364	+		ABIE40_RS16180	0.63	-1.5
3,204,364	+		ABIE40_RS16180	0.63	-0.6
3,204,364	+		ABIE40_RS16180	0.63	-3.7
3,204,364	+		ABIE40_RS16180	0.63	-4.2
3,204,365	-		ABIE40_RS16180	0.63	+0.4
3,204,365	-		ABIE40_RS16180	0.63	-0.2
3,204,365	-		ABIE40_RS16180	0.63	-1.1
3,204,365	-		ABIE40_RS16180	0.63	-0.7
3,204,365	-		ABIE40_RS16180	0.63	-1.8
3,204,365	-		ABIE40_RS16180	0.63	-2.1
3,204,365	-		ABIE40_RS16180	0.63	-0.5
3,204,365	-		ABIE40_RS16180	0.63	-0.3
3,204,365	-		ABIE40_RS16180	0.63	-2.1
3,204,368	+		ABIE40_RS16180	0.63	+0.5
3,204,368	+		ABIE40_RS16180	0.63	-1.5
3,204,368	+		ABIE40_RS16180	0.63	-1.0
3,204,368	+		ABIE40_RS16180	0.63	-1.0
3,204,368	+		ABIE40_RS16180	0.63	-1.3
3,204,368	+		ABIE40_RS16180	0.63	-1.3
3,204,368	+		ABIE40_RS16180	0.63	+1.8
3,204,368	+		ABIE40_RS16180	0.63	-0.5
3,204,368	+		ABIE40_RS16180	0.63	-2.2
3,204,368	+		ABIE40_RS16180	0.63	-0.7
3,204,369	-		ABIE40_RS16180	0.63	-0.0
3,204,369	-		ABIE40_RS16180	0.63	-2.7
3,204,369	-		ABIE40_RS16180	0.63	-1.1
3,204,369	-		ABIE40_RS16180	0.63	+0.2
3,204,369	-		ABIE40_RS16180	0.63	-1.5
3,204,369	-		ABIE40_RS16180	0.63	-0.0
3,204,379	+		ABIE40_RS16180	0.64	-3.8
3,204,379	+		ABIE40_RS16180	0.64	-0.5
3,204,379	+		ABIE40_RS16180	0.64	-1.2
3,204,379	+		ABIE40_RS16180	0.64	-1.2
3,204,379	+		ABIE40_RS16180	0.64	-1.8
3,204,379	+		ABIE40_RS16180	0.64	-2.3
3,204,379	+		ABIE40_RS16180	0.64	-3.0
3,204,380	-		ABIE40_RS16180	0.64	+0.3
3,204,380	-		ABIE40_RS16180	0.64	-1.3
3,204,380	-		ABIE40_RS16180	0.64	-0.1
3,204,634	+		ABIE40_RS16180	0.78	+2.8
3,204,634	+		ABIE40_RS16180	0.78	-1.0
3,204,634	+		ABIE40_RS16180	0.78	-1.9
3,204,642	-		ABIE40_RS16180	0.78	-0.8
3,204,694	-		ABIE40_RS16180	0.81	-0.8
3,204,769	+		ABIE40_RS16180	0.85	-1.9
3,204,769	+		ABIE40_RS16180	0.85	-1.8
3,204,769	+		ABIE40_RS16180	0.85	-1.1
3,204,769	+		ABIE40_RS16180	0.85	-1.3
3,204,769	+		ABIE40_RS16180	0.85	+0.2
3,204,769	+		ABIE40_RS16180	0.85	+0.2
3,204,770	-		ABIE40_RS16180	0.85	+0.5
3,204,770	-		ABIE40_RS16180	0.85	-2.5
3,204,778	+		ABIE40_RS16180	0.85	-0.5
3,204,778	+		ABIE40_RS16180	0.85	+0.8
3,204,779	-		ABIE40_RS16180	0.85	-2.2
3,204,779	-		ABIE40_RS16180	0.85	-1.8
3,204,779	-		ABIE40_RS16180	0.85	-0.3
3,204,779	-		ABIE40_RS16180	0.85	-2.5
3,204,779	-		ABIE40_RS16180	0.85	-1.0
3,204,779	-		ABIE40_RS16180	0.85	+0.8
3,204,781	-		ABIE40_RS16180	0.86	-1.5
3,204,781	-		ABIE40_RS16180	0.86	-0.0
3,204,781	-		ABIE40_RS16180	0.86	+0.4
3,204,808	+		ABIE40_RS16180	0.87	-0.3
3,204,808	+		ABIE40_RS16180	0.87	-1.0
3,204,808	+		ABIE40_RS16180	0.87	-0.6
3,204,808	+		ABIE40_RS16180	0.87	-2.6
3,204,808	+		ABIE40_RS16180	0.87	-2.6
3,204,809	-		ABIE40_RS16180	0.87	-0.7
3,204,809	-		ABIE40_RS16180	0.87	-3.6
3,204,809	-		ABIE40_RS16180	0.87	-3.3
3,204,809	-		ABIE40_RS16180	0.87	-0.5
3,204,814	+		ABIE40_RS16180	0.87	-1.1
3,204,815	-		ABIE40_RS16180	0.87	-3.6
3,204,815	-		ABIE40_RS16180	0.87	-1.7
3,204,815	-		ABIE40_RS16180	0.87	-1.7
3,204,815	-		ABIE40_RS16180	0.87	-0.2
3,204,815	-		ABIE40_RS16180	0.87	+0.5
3,204,815	-		ABIE40_RS16180	0.87	-0.4
3,204,815	-		ABIE40_RS16180	0.87	+0.1
3,204,820	+		ABIE40_RS16180	0.88	-0.4
3,204,821	-		ABIE40_RS16180	0.88	-2.5
3,204,821	-		ABIE40_RS16180	0.88	+0.8
3,204,821	-		ABIE40_RS16180	0.88	-3.0
3,204,853	+		ABIE40_RS16180	0.89	-0.3
3,204,853	+		ABIE40_RS16180	0.89	-3.0
3,204,854	-		ABIE40_RS16180	0.90	+0.2
3,204,854	-		ABIE40_RS16180	0.90	-0.8
3,204,895	+				-1.8
3,204,895	+				-3.4
3,204,895	+				-2.6
3,204,895	+				-2.2
3,204,896	-				-3.7
3,204,896	-				-1.1
3,204,896	-				-1.1
3,205,091	-				+1.1
3,205,093	+				-0.2
3,205,093	+				-0.8
3,205,094	-				+1.8
3,205,094	-				-0.2
3,205,094	-				-1.6
3,205,094	-				+0.1
3,205,248	-				-1.4
3,205,248	-				+0.3
3,205,272	+				-0.3
3,205,272	+				-2.3
3,205,272	+				+2.8
3,205,273	-				+0.3
3,205,273	-				-0.5
3,205,273	-				-0.2
3,205,273	-				+1.8
3,205,273	-				-0.9
3,205,273	-				-0.2
3,205,273	-				+0.1
3,205,286	-				-0.6
3,205,286	-				-0.5
3,205,286	-				+0.0
3,205,286	-				-1.2
3,205,331	+				-0.1
3,205,331	+				-1.5
3,205,331	+				-2.9
3,205,331	+				+0.5
3,205,331	+				-1.1
3,205,331	+				-1.2
3,205,331	+				-0.8
3,205,331	+				-0.5
3,205,331	+				-0.3
3,205,332	-				-0.5
3,205,332	-				-0.1
3,205,332	-				-0.4
3,205,332	-				+0.6
3,205,443	+		ABIE40_RS16185	0.10	-0.8
3,205,444	-		ABIE40_RS16185	0.10	-1.1
3,205,452	+		ABIE40_RS16185	0.11	-1.7
3,205,452	+		ABIE40_RS16185	0.11	+0.1
3,205,453	-		ABIE40_RS16185	0.11	-0.3
3,205,453	-		ABIE40_RS16185	0.11	+0.3
3,205,600	-		ABIE40_RS16185	0.24	+0.5
3,205,641	+		ABIE40_RS16185	0.28	-0.3
3,205,641	+		ABIE40_RS16185	0.28	-1.5
3,205,642	-		ABIE40_RS16185	0.28	+1.2
3,205,642	-		ABIE40_RS16185	0.28	+0.5
3,205,642	-		ABIE40_RS16185	0.28	+1.1
3,205,642	-		ABIE40_RS16185	0.28	+0.9
3,205,693	-		ABIE40_RS16185	0.33	-0.2
3,205,785	+		ABIE40_RS16185	0.41	+0.8
3,205,786	-		ABIE40_RS16185	0.41	-1.7
3,205,786	-		ABIE40_RS16185	0.41	+0.3
3,205,794	+		ABIE40_RS16185	0.42	-0.4
3,205,794	+		ABIE40_RS16185	0.42	-0.5
3,205,795	-		ABIE40_RS16185	0.42	-0.2
3,205,795	-		ABIE40_RS16185	0.42	+0.1
3,206,006	+		ABIE40_RS16185	0.61	+0.8
3,206,007	-		ABIE40_RS16185	0.61	-0.4