Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS10030

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS10025 and ABIE40_RS10030 are separated by 119 nucleotidesABIE40_RS10030 and ABIE40_RS10035 are separated by 50 nucleotides ABIE40_RS10025: ABIE40_RS10025 - anhydro-N-acetylmuramic acid kinase, at 1,928,932 to 1,930,068 _RS10025 ABIE40_RS10030: ABIE40_RS10030 - tyrosine--tRNA ligase, at 1,930,188 to 1,931,444 _RS10030 ABIE40_RS10035: ABIE40_RS10035 - DUF3971 domain-containing protein, at 1,931,495 to 1,934,896 _RS10035 Position (kb) 1930 1931 1932Strain fitness (log2 ratio) -2 -1 0 1 2at 1929.188 kb on + strand, within ABIE40_RS10025at 1929.188 kb on + strand, within ABIE40_RS10025at 1929.188 kb on + strand, within ABIE40_RS10025at 1929.188 kb on + strand, within ABIE40_RS10025at 1929.248 kb on + strand, within ABIE40_RS10025at 1929.248 kb on + strand, within ABIE40_RS10025at 1929.248 kb on + strand, within ABIE40_RS10025at 1929.248 kb on + strand, within ABIE40_RS10025at 1929.248 kb on + strand, within ABIE40_RS10025at 1929.248 kb on + strand, within ABIE40_RS10025at 1929.249 kb on - strand, within ABIE40_RS10025at 1929.249 kb on - strand, within ABIE40_RS10025at 1929.362 kb on + strand, within ABIE40_RS10025at 1929.363 kb on - strand, within ABIE40_RS10025at 1929.485 kb on + strand, within ABIE40_RS10025at 1929.485 kb on + strand, within ABIE40_RS10025at 1929.485 kb on + strand, within ABIE40_RS10025at 1929.486 kb on - strand, within ABIE40_RS10025at 1929.486 kb on - strand, within ABIE40_RS10025at 1929.498 kb on + strand, within ABIE40_RS10025at 1929.499 kb on - strand, within ABIE40_RS10025at 1929.499 kb on - strand, within ABIE40_RS10025at 1929.499 kb on - strand, within ABIE40_RS10025at 1929.515 kb on + strand, within ABIE40_RS10025at 1929.515 kb on + strand, within ABIE40_RS10025at 1929.515 kb on + strand, within ABIE40_RS10025at 1929.515 kb on + strand, within ABIE40_RS10025at 1929.515 kb on + strand, within ABIE40_RS10025at 1929.515 kb on + strand, within ABIE40_RS10025at 1929.515 kb on + strand, within ABIE40_RS10025at 1929.515 kb on + strand, within ABIE40_RS10025at 1929.515 kb on + strand, within ABIE40_RS10025at 1929.516 kb on - strand, within ABIE40_RS10025at 1929.516 kb on - strand, within ABIE40_RS10025at 1929.516 kb on - strand, within ABIE40_RS10025at 1929.516 kb on - strand, within ABIE40_RS10025at 1929.516 kb on - strand, within ABIE40_RS10025at 1929.516 kb on - strand, within ABIE40_RS10025at 1929.516 kb on - strand, within ABIE40_RS10025at 1929.516 kb on - strand, within ABIE40_RS10025at 1929.531 kb on + strand, within ABIE40_RS10025at 1929.531 kb on + strand, within ABIE40_RS10025at 1929.532 kb on - strand, within ABIE40_RS10025at 1929.541 kb on - strand, within ABIE40_RS10025at 1929.599 kb on + strand, within ABIE40_RS10025at 1929.599 kb on + strand, within ABIE40_RS10025at 1929.660 kb on - strand, within ABIE40_RS10025at 1929.660 kb on - strand, within ABIE40_RS10025at 1929.837 kb on + strand, within ABIE40_RS10025at 1929.837 kb on + strand, within ABIE40_RS10025at 1929.837 kb on + strand, within ABIE40_RS10025at 1929.837 kb on + strand, within ABIE40_RS10025at 1929.944 kb on + strand, within ABIE40_RS10025at 1929.944 kb on + strand, within ABIE40_RS10025at 1929.945 kb on - strand, within ABIE40_RS10025at 1930.097 kb on - strandat 1930.097 kb on - strandat 1931.443 kb on - strandat 1932.023 kb on - strand, within ABIE40_RS10035at 1932.030 kb on + strand, within ABIE40_RS10035at 1932.178 kb on - strand, within ABIE40_RS10035at 1932.178 kb on - strand, within ABIE40_RS10035

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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1,929,188 + ABIE40_RS10025 0.23 +0.4
1,929,188 + ABIE40_RS10025 0.23 -0.4
1,929,188 + ABIE40_RS10025 0.23 +0.5
1,929,188 + ABIE40_RS10025 0.23 +0.6
1,929,248 + ABIE40_RS10025 0.28 -0.7
1,929,248 + ABIE40_RS10025 0.28 -0.4
1,929,248 + ABIE40_RS10025 0.28 +0.9
1,929,248 + ABIE40_RS10025 0.28 +1.1
1,929,248 + ABIE40_RS10025 0.28 -1.9
1,929,248 + ABIE40_RS10025 0.28 +1.2
1,929,249 - ABIE40_RS10025 0.28 +0.5
1,929,249 - ABIE40_RS10025 0.28 -1.3
1,929,362 + ABIE40_RS10025 0.38 +1.4
1,929,363 - ABIE40_RS10025 0.38 -0.1
1,929,485 + ABIE40_RS10025 0.49 -1.4
1,929,485 + ABIE40_RS10025 0.49 -0.8
1,929,485 + ABIE40_RS10025 0.49 +0.1
1,929,486 - ABIE40_RS10025 0.49 +0.4
1,929,486 - ABIE40_RS10025 0.49 -0.9
1,929,498 + ABIE40_RS10025 0.50 +0.7
1,929,499 - ABIE40_RS10025 0.50 +1.5
1,929,499 - ABIE40_RS10025 0.50 -0.7
1,929,499 - ABIE40_RS10025 0.50 -0.1
1,929,515 + ABIE40_RS10025 0.51 +0.5
1,929,515 + ABIE40_RS10025 0.51 +0.7
1,929,515 + ABIE40_RS10025 0.51 -0.1
1,929,515 + ABIE40_RS10025 0.51 -0.7
1,929,515 + ABIE40_RS10025 0.51 +0.5
1,929,515 + ABIE40_RS10025 0.51 +0.3
1,929,515 + ABIE40_RS10025 0.51 +1.1
1,929,515 + ABIE40_RS10025 0.51 -0.4
1,929,515 + ABIE40_RS10025 0.51 -1.1
1,929,516 - ABIE40_RS10025 0.51 -0.2
1,929,516 - ABIE40_RS10025 0.51 +0.1
1,929,516 - ABIE40_RS10025 0.51 -0.7
1,929,516 - ABIE40_RS10025 0.51 +1.0
1,929,516 - ABIE40_RS10025 0.51 +0.5
1,929,516 - ABIE40_RS10025 0.51 -0.3
1,929,516 - ABIE40_RS10025 0.51 -0.0
1,929,516 - ABIE40_RS10025 0.51 -0.4
1,929,531 + ABIE40_RS10025 0.53 -0.4
1,929,531 + ABIE40_RS10025 0.53 -0.5
1,929,532 - ABIE40_RS10025 0.53 -0.9
1,929,541 - ABIE40_RS10025 0.54 -0.7
1,929,599 + ABIE40_RS10025 0.59 -0.7
1,929,599 + ABIE40_RS10025 0.59 +1.0
1,929,660 - ABIE40_RS10025 0.64 +0.1
1,929,660 - ABIE40_RS10025 0.64 +0.0
1,929,837 + ABIE40_RS10025 0.80 +0.3
1,929,837 + ABIE40_RS10025 0.80 +0.1
1,929,837 + ABIE40_RS10025 0.80 -0.2
1,929,837 + ABIE40_RS10025 0.80 +0.2
1,929,944 + ABIE40_RS10025 0.89 -0.8
1,929,944 + ABIE40_RS10025 0.89 +1.5
1,929,945 - ABIE40_RS10025 0.89 -0.1
1,930,097 - -0.1
1,930,097 - +1.9
1,931,443 - -0.3
1,932,023 - ABIE40_RS10035 0.16 -0.1
1,932,030 + ABIE40_RS10035 0.16 +1.9
1,932,178 - ABIE40_RS10035 0.20 +0.9
1,932,178 - ABIE40_RS10035 0.20 +1.9

Or see this region's nucleotide sequence