Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS05730 and ABIE40_RS05735 overlap by 4 nucleotides ABIE40_RS05735 and ABIE40_RS05740 are separated by 41 nucleotides ABIE40_RS05740 and ABIE40_RS05745 are separated by 134 nucleotides
ABIE40_RS05730: ABIE40_RS05730 - hypothetical protein, at 1,128,486 to 1,129,376
_RS05730
ABIE40_RS05735: ABIE40_RS05735 - hypothetical protein, at 1,129,373 to 1,129,522
_RS05735
ABIE40_RS05740: ABIE40_RS05740 - hypothetical protein, at 1,129,564 to 1,129,755
_RS05740
ABIE40_RS05745: ABIE40_RS05745 - uracil-DNA glycosylase, at 1,129,890 to 1,130,774
_RS05745
Position (kb) 1129
1130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1128.390 kb on + strand at 1128.451 kb on + strand at 1128.451 kb on + strand at 1128.451 kb on + strand at 1128.452 kb on - strand at 1128.452 kb on - strand at 1128.452 kb on - strand at 1128.640 kb on - strand, within ABIE40_RS05730 at 1128.775 kb on - strand, within ABIE40_RS05730 at 1128.791 kb on + strand, within ABIE40_RS05730 at 1128.792 kb on - strand, within ABIE40_RS05730 at 1129.107 kb on + strand, within ABIE40_RS05730 at 1129.107 kb on + strand, within ABIE40_RS05730 at 1129.107 kb on + strand, within ABIE40_RS05730 at 1129.108 kb on - strand, within ABIE40_RS05730 at 1129.108 kb on - strand, within ABIE40_RS05730 at 1129.219 kb on - strand, within ABIE40_RS05730 at 1129.273 kb on - strand, within ABIE40_RS05730 at 1129.273 kb on - strand, within ABIE40_RS05730 at 1129.273 kb on - strand, within ABIE40_RS05730 at 1129.302 kb on + strand at 1129.303 kb on - strand at 1129.303 kb on - strand at 1129.303 kb on - strand at 1129.303 kb on - strand at 1129.304 kb on + strand at 1129.304 kb on + strand at 1129.304 kb on + strand at 1129.304 kb on + strand at 1129.374 kb on + strand at 1129.374 kb on + strand at 1129.375 kb on - strand at 1129.440 kb on + strand, within ABIE40_RS05735 at 1129.440 kb on + strand, within ABIE40_RS05735 at 1129.441 kb on - strand, within ABIE40_RS05735 at 1129.441 kb on - strand, within ABIE40_RS05735 at 1129.441 kb on - strand, within ABIE40_RS05735 at 1129.441 kb on - strand, within ABIE40_RS05735 at 1129.471 kb on + strand, within ABIE40_RS05735 at 1129.527 kb on + strand at 1129.527 kb on + strand at 1129.528 kb on - strand at 1129.528 kb on - strand at 1129.568 kb on + strand at 1129.569 kb on - strand at 1129.732 kb on + strand, within ABIE40_RS05740 at 1129.733 kb on - strand, within ABIE40_RS05740 at 1129.733 kb on - strand, within ABIE40_RS05740 at 1129.733 kb on - strand, within ABIE40_RS05740 at 1129.793 kb on + strand at 1129.795 kb on + strand at 1129.795 kb on + strand at 1129.796 kb on - strand at 1129.796 kb on - strand at 1129.796 kb on - strand at 1129.797 kb on + strand at 1129.797 kb on + strand at 1129.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 1,128,390 + -0.3 1,128,451 + +0.3 1,128,451 + +0.7 1,128,451 + -0.3 1,128,452 - +1.0 1,128,452 - +0.9 1,128,452 - -1.7 1,128,640 - ABIE40_RS05730 0.17 -0.6 1,128,775 - ABIE40_RS05730 0.32 -2.6 1,128,791 + ABIE40_RS05730 0.34 -0.3 1,128,792 - ABIE40_RS05730 0.34 +0.5 1,129,107 + ABIE40_RS05730 0.70 -0.0 1,129,107 + ABIE40_RS05730 0.70 +0.5 1,129,107 + ABIE40_RS05730 0.70 +0.9 1,129,108 - ABIE40_RS05730 0.70 +0.4 1,129,108 - ABIE40_RS05730 0.70 -1.6 1,129,219 - ABIE40_RS05730 0.82 +0.3 1,129,273 - ABIE40_RS05730 0.88 -1.6 1,129,273 - ABIE40_RS05730 0.88 +0.6 1,129,273 - ABIE40_RS05730 0.88 -1.2 1,129,302 + -0.8 1,129,303 - -0.9 1,129,303 - +0.4 1,129,303 - -1.1 1,129,303 - +2.8 1,129,304 + -0.7 1,129,304 + -1.9 1,129,304 + -1.3 1,129,304 + -3.6 1,129,374 + -0.3 1,129,374 + +0.9 1,129,375 - -0.1 1,129,440 + ABIE40_RS05735 0.45 -0.2 1,129,440 + ABIE40_RS05735 0.45 -2.1 1,129,441 - ABIE40_RS05735 0.45 -1.6 1,129,441 - ABIE40_RS05735 0.45 -2.2 1,129,441 - ABIE40_RS05735 0.45 -1.9 1,129,441 - ABIE40_RS05735 0.45 +0.5 1,129,471 + ABIE40_RS05735 0.65 -0.3 1,129,527 + -1.4 1,129,527 + -0.0 1,129,528 - +0.3 1,129,528 - +0.1 1,129,568 + -1.5 1,129,569 - -0.6 1,129,732 + ABIE40_RS05740 0.88 +0.3 1,129,733 - ABIE40_RS05740 0.88 +0.6 1,129,733 - ABIE40_RS05740 0.88 +0.5 1,129,733 - ABIE40_RS05740 0.88 +1.8 1,129,793 + +1.6 1,129,795 + +1.1 1,129,795 + -1.5 1,129,796 - +0.7 1,129,796 - -3.2 1,129,796 - -0.4 1,129,797 + -0.5 1,129,797 + +0.8 1,129,798 - -0.5
Or see this region's nucleotide sequence