Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04835 and ABIE40_RS04840 are separated by 13 nucleotides ABIE40_RS04840 and ABIE40_RS04845 are separated by 231 nucleotides ABIE40_RS04845 and ABIE40_RS04850 are separated by 250 nucleotides ABIE40_RS04850 and ABIE40_RS04855 are separated by 31 nucleotides
ABIE40_RS04835: ABIE40_RS04835 - DUF1254 domain-containing protein, at 946,733 to 948,193
_RS04835
ABIE40_RS04840: ABIE40_RS04840 - DUF1697 domain-containing protein, at 948,207 to 948,737
_RS04840
ABIE40_RS04845: ABIE40_RS04845 - S9 family peptidase, at 948,969 to 951,077
_RS04845
ABIE40_RS04850: ABIE40_RS04850 - DUF930 domain-containing protein, at 951,328 to 951,717
_RS04850
ABIE40_RS04855: ABIE40_RS04855 - Rrf2 family transcriptional regulator, at 951,749 to 952,192
_RS04855
Position (kb) 948
949
950
951
952 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 948.041 kb on + strand, within ABIE40_RS04835 at 948.041 kb on + strand, within ABIE40_RS04835 at 948.041 kb on + strand, within ABIE40_RS04835 at 948.042 kb on - strand, within ABIE40_RS04835 at 948.042 kb on - strand, within ABIE40_RS04835 at 948.116 kb on + strand at 948.116 kb on + strand at 948.116 kb on + strand at 948.117 kb on - strand at 948.117 kb on - strand at 948.117 kb on - strand at 948.119 kb on - strand at 948.128 kb on + strand at 948.128 kb on + strand at 948.129 kb on - strand at 948.129 kb on - strand at 948.129 kb on - strand at 948.129 kb on - strand at 948.191 kb on + strand at 948.191 kb on + strand at 948.191 kb on + strand at 948.191 kb on + strand at 948.192 kb on - strand at 948.192 kb on - strand at 948.269 kb on + strand, within ABIE40_RS04840 at 948.269 kb on + strand, within ABIE40_RS04840 at 948.269 kb on + strand, within ABIE40_RS04840 at 948.270 kb on - strand, within ABIE40_RS04840 at 948.270 kb on - strand, within ABIE40_RS04840 at 948.270 kb on - strand, within ABIE40_RS04840 at 948.328 kb on - strand, within ABIE40_RS04840 at 948.343 kb on + strand, within ABIE40_RS04840 at 948.343 kb on + strand, within ABIE40_RS04840 at 948.343 kb on + strand, within ABIE40_RS04840 at 948.343 kb on + strand, within ABIE40_RS04840 at 948.343 kb on + strand, within ABIE40_RS04840 at 948.343 kb on + strand, within ABIE40_RS04840 at 948.343 kb on + strand, within ABIE40_RS04840 at 948.344 kb on - strand, within ABIE40_RS04840 at 948.344 kb on - strand, within ABIE40_RS04840 at 948.344 kb on - strand, within ABIE40_RS04840 at 948.344 kb on - strand, within ABIE40_RS04840 at 948.344 kb on - strand, within ABIE40_RS04840 at 948.344 kb on - strand, within ABIE40_RS04840 at 948.344 kb on - strand, within ABIE40_RS04840 at 948.344 kb on - strand, within ABIE40_RS04840 at 948.344 kb on - strand, within ABIE40_RS04840 at 948.344 kb on - strand, within ABIE40_RS04840 at 948.344 kb on - strand, within ABIE40_RS04840 at 948.622 kb on + strand, within ABIE40_RS04840 at 948.623 kb on - strand, within ABIE40_RS04840 at 948.623 kb on - strand, within ABIE40_RS04840 at 948.727 kb on + strand at 948.728 kb on - strand at 948.728 kb on - strand at 948.870 kb on + strand at 948.871 kb on - strand at 948.871 kb on - strand at 948.871 kb on - strand at 948.871 kb on - strand at 948.871 kb on - strand at 948.871 kb on - strand at 948.874 kb on + strand at 948.874 kb on + strand at 948.874 kb on + strand at 948.875 kb on - strand at 948.970 kb on + strand at 948.970 kb on + strand at 948.970 kb on + strand at 948.971 kb on - strand at 948.971 kb on - strand at 948.971 kb on - strand at 948.971 kb on - strand at 948.971 kb on - strand at 948.971 kb on - strand at 948.971 kb on - strand at 948.971 kb on - strand at 948.971 kb on - strand at 949.067 kb on + strand at 949.145 kb on - strand at 949.193 kb on - strand, within ABIE40_RS04845 at 949.243 kb on + strand, within ABIE40_RS04845 at 949.243 kb on + strand, within ABIE40_RS04845 at 949.243 kb on + strand, within ABIE40_RS04845 at 949.244 kb on - strand, within ABIE40_RS04845 at 949.244 kb on - strand, within ABIE40_RS04845 at 949.244 kb on - strand, within ABIE40_RS04845 at 949.436 kb on + strand, within ABIE40_RS04845 at 949.436 kb on + strand, within ABIE40_RS04845 at 949.436 kb on + strand, within ABIE40_RS04845 at 949.444 kb on + strand, within ABIE40_RS04845 at 949.445 kb on - strand, within ABIE40_RS04845 at 949.445 kb on - strand, within ABIE40_RS04845 at 949.502 kb on + strand, within ABIE40_RS04845 at 949.502 kb on + strand, within ABIE40_RS04845 at 949.502 kb on + strand, within ABIE40_RS04845 at 949.503 kb on - strand, within ABIE40_RS04845 at 949.582 kb on + strand, within ABIE40_RS04845 at 949.582 kb on + strand, within ABIE40_RS04845 at 949.583 kb on - strand, within ABIE40_RS04845 at 949.663 kb on + strand, within ABIE40_RS04845 at 949.663 kb on + strand, within ABIE40_RS04845 at 949.664 kb on - strand, within ABIE40_RS04845 at 949.664 kb on - strand, within ABIE40_RS04845 at 949.708 kb on + strand, within ABIE40_RS04845 at 949.771 kb on + strand, within ABIE40_RS04845 at 949.771 kb on + strand, within ABIE40_RS04845 at 949.771 kb on + strand, within ABIE40_RS04845 at 949.771 kb on + strand, within ABIE40_RS04845 at 949.771 kb on + strand, within ABIE40_RS04845 at 949.772 kb on - strand, within ABIE40_RS04845 at 949.772 kb on - strand, within ABIE40_RS04845 at 949.843 kb on + strand, within ABIE40_RS04845 at 949.843 kb on + strand, within ABIE40_RS04845 at 949.850 kb on - strand, within ABIE40_RS04845 at 949.850 kb on - strand, within ABIE40_RS04845 at 949.879 kb on + strand, within ABIE40_RS04845 at 949.936 kb on + strand, within ABIE40_RS04845 at 949.936 kb on + strand, within ABIE40_RS04845 at 949.937 kb on - strand, within ABIE40_RS04845 at 949.937 kb on - strand, within ABIE40_RS04845 at 950.176 kb on + strand, within ABIE40_RS04845 at 950.176 kb on + strand, within ABIE40_RS04845 at 950.176 kb on + strand, within ABIE40_RS04845 at 950.176 kb on + strand, within ABIE40_RS04845 at 950.176 kb on + strand, within ABIE40_RS04845 at 950.177 kb on - strand, within ABIE40_RS04845 at 950.177 kb on - strand, within ABIE40_RS04845 at 950.177 kb on - strand, within ABIE40_RS04845 at 950.204 kb on + strand, within ABIE40_RS04845 at 950.204 kb on + strand, within ABIE40_RS04845 at 950.204 kb on + strand, within ABIE40_RS04845 at 950.204 kb on + strand, within ABIE40_RS04845 at 950.205 kb on - strand, within ABIE40_RS04845 at 950.205 kb on - strand, within ABIE40_RS04845 at 950.206 kb on + strand, within ABIE40_RS04845 at 950.207 kb on - strand, within ABIE40_RS04845 at 950.207 kb on - strand, within ABIE40_RS04845 at 950.207 kb on - strand, within ABIE40_RS04845 at 950.207 kb on - strand, within ABIE40_RS04845 at 950.309 kb on + strand, within ABIE40_RS04845 at 950.310 kb on - strand, within ABIE40_RS04845 at 950.311 kb on + strand, within ABIE40_RS04845 at 950.311 kb on + strand, within ABIE40_RS04845 at 950.311 kb on + strand, within ABIE40_RS04845 at 950.312 kb on - strand, within ABIE40_RS04845 at 950.374 kb on + strand, within ABIE40_RS04845 at 950.375 kb on - strand, within ABIE40_RS04845 at 950.375 kb on - strand, within ABIE40_RS04845 at 950.459 kb on - strand, within ABIE40_RS04845 at 950.587 kb on + strand, within ABIE40_RS04845 at 950.587 kb on + strand, within ABIE40_RS04845 at 950.587 kb on + strand, within ABIE40_RS04845 at 950.588 kb on - strand, within ABIE40_RS04845 at 950.588 kb on - strand, within ABIE40_RS04845 at 950.644 kb on + strand, within ABIE40_RS04845 at 950.644 kb on + strand, within ABIE40_RS04845 at 950.644 kb on + strand, within ABIE40_RS04845 at 950.644 kb on + strand, within ABIE40_RS04845 at 950.644 kb on + strand, within ABIE40_RS04845 at 950.645 kb on - strand, within ABIE40_RS04845 at 950.645 kb on - strand, within ABIE40_RS04845 at 950.734 kb on + strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.888 kb on + strand at 950.888 kb on + strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.967 kb on - strand at 950.986 kb on + strand at 950.987 kb on - strand at 951.116 kb on + strand at 951.116 kb on + strand at 951.116 kb on + strand at 951.116 kb on + strand at 951.116 kb on + strand at 951.117 kb on - strand at 951.117 kb on - strand at 951.117 kb on - strand at 951.117 kb on - strand at 951.163 kb on + strand at 951.164 kb on - strand at 951.164 kb on - strand at 951.174 kb on + strand at 951.174 kb on + strand at 951.219 kb on + strand at 951.310 kb on + strand at 951.325 kb on + strand at 951.326 kb on - strand at 951.520 kb on + strand, within ABIE40_RS04850 at 951.520 kb on + strand, within ABIE40_RS04850 at 951.598 kb on + strand, within ABIE40_RS04850 at 951.599 kb on - strand, within ABIE40_RS04850 at 951.610 kb on + strand, within ABIE40_RS04850 at 951.611 kb on - strand, within ABIE40_RS04850 at 951.611 kb on - strand, within ABIE40_RS04850 at 951.688 kb on - strand at 951.688 kb on - strand at 951.688 kb on - strand at 951.688 kb on - strand at 951.700 kb on + strand at 951.700 kb on + strand at 951.700 kb on + strand at 951.701 kb on - strand at 951.701 kb on - strand at 951.701 kb on - strand at 951.703 kb on + strand at 951.703 kb on + strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.709 kb on + strand at 951.709 kb on + strand at 951.730 kb on - strand at 951.740 kb on + strand at 951.740 kb on + strand at 951.741 kb on - strand at 951.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 948,041 + ABIE40_RS04835 0.90 -0.6 948,041 + ABIE40_RS04835 0.90 -0.1 948,041 + ABIE40_RS04835 0.90 -0.0 948,042 - ABIE40_RS04835 0.90 -2.3 948,042 - ABIE40_RS04835 0.90 -0.0 948,116 + -0.1 948,116 + +0.2 948,116 + +0.3 948,117 - +0.3 948,117 - -0.6 948,117 - +1.5 948,119 - +0.7 948,128 + +0.3 948,128 + +0.5 948,129 - +0.0 948,129 - +0.1 948,129 - +0.3 948,129 - -0.6 948,191 + -1.9 948,191 + +0.4 948,191 + -0.7 948,191 + -0.7 948,192 - +0.8 948,192 - +0.6 948,269 + ABIE40_RS04840 0.12 +2.0 948,269 + ABIE40_RS04840 0.12 -1.3 948,269 + ABIE40_RS04840 0.12 +0.7 948,270 - ABIE40_RS04840 0.12 +0.3 948,270 - ABIE40_RS04840 0.12 -0.9 948,270 - ABIE40_RS04840 0.12 +0.7 948,328 - ABIE40_RS04840 0.23 -0.4 948,343 + ABIE40_RS04840 0.26 -0.5 948,343 + ABIE40_RS04840 0.26 +0.8 948,343 + ABIE40_RS04840 0.26 -0.5 948,343 + ABIE40_RS04840 0.26 +0.5 948,343 + ABIE40_RS04840 0.26 -2.3 948,343 + ABIE40_RS04840 0.26 -1.2 948,343 + ABIE40_RS04840 0.26 +0.3 948,344 - ABIE40_RS04840 0.26 +0.0 948,344 - ABIE40_RS04840 0.26 -0.4 948,344 - ABIE40_RS04840 0.26 -0.3 948,344 - ABIE40_RS04840 0.26 -0.5 948,344 - ABIE40_RS04840 0.26 +0.2 948,344 - ABIE40_RS04840 0.26 -0.8 948,344 - ABIE40_RS04840 0.26 +1.6 948,344 - ABIE40_RS04840 0.26 -0.4 948,344 - ABIE40_RS04840 0.26 +0.4 948,344 - ABIE40_RS04840 0.26 -0.2 948,344 - ABIE40_RS04840 0.26 -1.0 948,622 + ABIE40_RS04840 0.78 +1.1 948,623 - ABIE40_RS04840 0.78 -0.4 948,623 - ABIE40_RS04840 0.78 -2.2 948,727 + -1.3 948,728 - +0.4 948,728 - -0.6 948,870 + -2.6 948,871 - +0.2 948,871 - +0.4 948,871 - -1.5 948,871 - -0.2 948,871 - -0.1 948,871 - +0.1 948,874 + +0.6 948,874 + +1.1 948,874 + +1.8 948,875 - -0.5 948,970 + +0.2 948,970 + +2.4 948,970 + -1.0 948,971 - -1.1 948,971 - -0.1 948,971 - -0.2 948,971 - -0.0 948,971 - -0.0 948,971 - +0.3 948,971 - +1.1 948,971 - -1.0 948,971 - +0.1 949,067 + -0.5 949,145 - -1.3 949,193 - ABIE40_RS04845 0.11 -4.1 949,243 + ABIE40_RS04845 0.13 -1.5 949,243 + ABIE40_RS04845 0.13 -2.1 949,243 + ABIE40_RS04845 0.13 -2.0 949,244 - ABIE40_RS04845 0.13 -0.9 949,244 - ABIE40_RS04845 0.13 -1.9 949,244 - ABIE40_RS04845 0.13 -3.9 949,436 + ABIE40_RS04845 0.22 -3.9 949,436 + ABIE40_RS04845 0.22 -1.4 949,436 + ABIE40_RS04845 0.22 -1.2 949,444 + ABIE40_RS04845 0.23 -0.9 949,445 - ABIE40_RS04845 0.23 -1.7 949,445 - ABIE40_RS04845 0.23 -2.1 949,502 + ABIE40_RS04845 0.25 -1.9 949,502 + ABIE40_RS04845 0.25 -2.2 949,502 + ABIE40_RS04845 0.25 +0.5 949,503 - ABIE40_RS04845 0.25 -0.5 949,582 + ABIE40_RS04845 0.29 -1.2 949,582 + ABIE40_RS04845 0.29 -1.5 949,583 - ABIE40_RS04845 0.29 -2.6 949,663 + ABIE40_RS04845 0.33 -3.9 949,663 + ABIE40_RS04845 0.33 -1.4 949,664 - ABIE40_RS04845 0.33 -0.5 949,664 - ABIE40_RS04845 0.33 -0.9 949,708 + ABIE40_RS04845 0.35 -2.3 949,771 + ABIE40_RS04845 0.38 -0.0 949,771 + ABIE40_RS04845 0.38 +1.0 949,771 + ABIE40_RS04845 0.38 -1.3 949,771 + ABIE40_RS04845 0.38 -1.2 949,771 + ABIE40_RS04845 0.38 -2.1 949,772 - ABIE40_RS04845 0.38 -3.8 949,772 - ABIE40_RS04845 0.38 -2.1 949,843 + ABIE40_RS04845 0.41 -1.0 949,843 + ABIE40_RS04845 0.41 -3.0 949,850 - ABIE40_RS04845 0.42 -1.3 949,850 - ABIE40_RS04845 0.42 -2.1 949,879 + ABIE40_RS04845 0.43 -1.7 949,936 + ABIE40_RS04845 0.46 -1.3 949,936 + ABIE40_RS04845 0.46 -2.4 949,937 - ABIE40_RS04845 0.46 +0.3 949,937 - ABIE40_RS04845 0.46 -1.5 950,176 + ABIE40_RS04845 0.57 +0.8 950,176 + ABIE40_RS04845 0.57 -1.6 950,176 + ABIE40_RS04845 0.57 -1.3 950,176 + ABIE40_RS04845 0.57 -1.2 950,176 + ABIE40_RS04845 0.57 -1.6 950,177 - ABIE40_RS04845 0.57 -1.9 950,177 - ABIE40_RS04845 0.57 -4.1 950,177 - ABIE40_RS04845 0.57 -2.8 950,204 + ABIE40_RS04845 0.59 -0.6 950,204 + ABIE40_RS04845 0.59 -0.2 950,204 + ABIE40_RS04845 0.59 -2.1 950,204 + ABIE40_RS04845 0.59 +3.0 950,205 - ABIE40_RS04845 0.59 -1.5 950,205 - ABIE40_RS04845 0.59 -1.7 950,206 + ABIE40_RS04845 0.59 -1.9 950,207 - ABIE40_RS04845 0.59 -1.6 950,207 - ABIE40_RS04845 0.59 -1.5 950,207 - ABIE40_RS04845 0.59 -2.1 950,207 - ABIE40_RS04845 0.59 -1.7 950,309 + ABIE40_RS04845 0.64 -0.6 950,310 - ABIE40_RS04845 0.64 -0.7 950,311 + ABIE40_RS04845 0.64 +0.3 950,311 + ABIE40_RS04845 0.64 -1.8 950,311 + ABIE40_RS04845 0.64 -0.2 950,312 - ABIE40_RS04845 0.64 -0.2 950,374 + ABIE40_RS04845 0.67 -1.0 950,375 - ABIE40_RS04845 0.67 -1.5 950,375 - ABIE40_RS04845 0.67 -0.4 950,459 - ABIE40_RS04845 0.71 -0.2 950,587 + ABIE40_RS04845 0.77 -2.7 950,587 + ABIE40_RS04845 0.77 -2.7 950,587 + ABIE40_RS04845 0.77 -1.7 950,588 - ABIE40_RS04845 0.77 +1.3 950,588 - ABIE40_RS04845 0.77 -2.2 950,644 + ABIE40_RS04845 0.79 -1.3 950,644 + ABIE40_RS04845 0.79 -0.8 950,644 + ABIE40_RS04845 0.79 -1.9 950,644 + ABIE40_RS04845 0.79 -3.0 950,644 + ABIE40_RS04845 0.79 -0.2 950,645 - ABIE40_RS04845 0.79 -3.5 950,645 - ABIE40_RS04845 0.79 -1.5 950,734 + ABIE40_RS04845 0.84 -3.5 950,735 - ABIE40_RS04845 0.84 -2.6 950,735 - ABIE40_RS04845 0.84 -1.3 950,735 - ABIE40_RS04845 0.84 -0.8 950,735 - ABIE40_RS04845 0.84 -3.2 950,735 - ABIE40_RS04845 0.84 +1.8 950,735 - ABIE40_RS04845 0.84 -2.0 950,888 + +0.8 950,888 + -1.3 950,889 - -1.9 950,889 - -0.3 950,889 - -2.6 950,889 - -4.7 950,889 - -1.3 950,889 - -3.5 950,889 - -1.4 950,889 - +1.1 950,890 + -3.7 950,890 + +0.3 950,890 + -1.7 950,890 + -2.8 950,890 + +0.3 950,890 + -2.7 950,890 + -1.6 950,890 + -0.5 950,967 - -1.7 950,986 + +0.5 950,987 - -1.5 951,116 + -1.3 951,116 + -3.4 951,116 + -1.5 951,116 + -0.7 951,116 + -1.3 951,117 - +0.1 951,117 - +0.7 951,117 - -0.5 951,117 - +0.1 951,163 + -0.9 951,164 - -1.6 951,164 - -1.3 951,174 + -1.7 951,174 + -2.9 951,219 + -1.3 951,310 + +0.7 951,325 + -0.5 951,326 - -2.2 951,520 + ABIE40_RS04850 0.49 -0.1 951,520 + ABIE40_RS04850 0.49 -0.5 951,598 + ABIE40_RS04850 0.69 -0.2 951,599 - ABIE40_RS04850 0.69 -0.2 951,610 + ABIE40_RS04850 0.72 +1.0 951,611 - ABIE40_RS04850 0.73 -1.0 951,611 - ABIE40_RS04850 0.73 -0.0 951,688 - +3.4 951,688 - +0.4 951,688 - -0.6 951,688 - -1.7 951,700 + +0.2 951,700 + -0.5 951,700 + -1.1 951,701 - +0.8 951,701 - -0.2 951,701 - -1.0 951,703 + -2.2 951,703 + -1.6 951,704 - -2.9 951,704 - -1.3 951,704 - +3.1 951,704 - +0.8 951,704 - -0.7 951,704 - -1.3 951,709 + +2.8 951,709 + -1.0 951,730 - -0.1 951,740 + +1.8 951,740 + -0.3 951,741 - +1.8 951,741 - -0.2
Or see this region's nucleotide sequence