Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03250

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03250 and ABIE40_RS03255 are separated by 23 nucleotides ABIE40_RS03250: ABIE40_RS03250 - hypothetical protein, at 645,432 to 645,668 _RS03250 ABIE40_RS03255: ABIE40_RS03255 - isocitrate lyase, at 645,692 to 646,981 _RS03255 Position (kb) 645 646Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 644.550 kb on + strandat 644.551 kb on - strandat 644.551 kb on - strandat 644.551 kb on - strandat 644.551 kb on - strandat 644.748 kb on + strandat 644.748 kb on + strandat 644.821 kb on - strandat 644.821 kb on - strandat 644.882 kb on - strandat 644.882 kb on - strandat 644.883 kb on + strandat 644.883 kb on + strandat 644.884 kb on - strandat 644.988 kb on + strandat 644.989 kb on - strandat 644.989 kb on - strandat 644.989 kb on - strandat 644.989 kb on - strandat 644.998 kb on - strandat 644.998 kb on - strandat 645.117 kb on + strandat 645.117 kb on + strandat 645.117 kb on + strandat 645.117 kb on + strandat 645.117 kb on + strandat 645.118 kb on - strandat 645.118 kb on - strandat 645.232 kb on + strandat 645.276 kb on + strandat 645.276 kb on + strandat 645.277 kb on - strandat 645.277 kb on - strandat 645.283 kb on + strandat 645.325 kb on + strandat 645.325 kb on + strandat 645.326 kb on - strandat 645.326 kb on - strandat 645.326 kb on - strandat 645.337 kb on + strandat 645.352 kb on - strandat 645.354 kb on + strandat 645.354 kb on + strandat 645.354 kb on + strandat 645.354 kb on + strandat 645.354 kb on + strandat 645.354 kb on + strandat 645.354 kb on + strandat 645.354 kb on + strandat 645.355 kb on - strandat 645.355 kb on - strandat 645.355 kb on - strandat 645.355 kb on - strandat 645.355 kb on - strandat 645.433 kb on + strandat 645.433 kb on + strandat 645.433 kb on + strandat 645.433 kb on + strandat 645.433 kb on + strandat 645.434 kb on - strandat 645.434 kb on - strandat 645.434 kb on - strandat 645.434 kb on - strandat 645.527 kb on + strand, within ABIE40_RS03250at 645.527 kb on + strand, within ABIE40_RS03250at 645.820 kb on + strandat 645.820 kb on + strandat 645.820 kb on + strandat 645.820 kb on + strandat 645.821 kb on - strand, within ABIE40_RS03255at 645.832 kb on - strand, within ABIE40_RS03255at 645.900 kb on + strand, within ABIE40_RS03255at 645.901 kb on - strand, within ABIE40_RS03255at 645.901 kb on - strand, within ABIE40_RS03255at 645.972 kb on + strand, within ABIE40_RS03255at 645.972 kb on + strand, within ABIE40_RS03255at 645.973 kb on - strand, within ABIE40_RS03255at 645.973 kb on - strand, within ABIE40_RS03255at 645.973 kb on - strand, within ABIE40_RS03255at 645.973 kb on - strand, within ABIE40_RS03255at 646.057 kb on + strand, within ABIE40_RS03255at 646.057 kb on + strand, within ABIE40_RS03255at 646.057 kb on + strand, within ABIE40_RS03255at 646.057 kb on + strand, within ABIE40_RS03255at 646.057 kb on + strand, within ABIE40_RS03255at 646.058 kb on - strand, within ABIE40_RS03255at 646.058 kb on - strand, within ABIE40_RS03255at 646.058 kb on - strand, within ABIE40_RS03255at 646.058 kb on - strand, within ABIE40_RS03255at 646.058 kb on - strand, within ABIE40_RS03255at 646.058 kb on - strand, within ABIE40_RS03255at 646.058 kb on - strand, within ABIE40_RS03255at 646.058 kb on - strand, within ABIE40_RS03255at 646.058 kb on - strand, within ABIE40_RS03255at 646.059 kb on + strand, within ABIE40_RS03255at 646.059 kb on + strand, within ABIE40_RS03255at 646.060 kb on - strand, within ABIE40_RS03255at 646.060 kb on - strand, within ABIE40_RS03255at 646.161 kb on + strand, within ABIE40_RS03255at 646.207 kb on + strand, within ABIE40_RS03255at 646.217 kb on + strand, within ABIE40_RS03255at 646.218 kb on + strand, within ABIE40_RS03255at 646.218 kb on + strand, within ABIE40_RS03255at 646.219 kb on - strand, within ABIE40_RS03255at 646.219 kb on - strand, within ABIE40_RS03255at 646.219 kb on - strand, within ABIE40_RS03255at 646.219 kb on - strand, within ABIE40_RS03255at 646.219 kb on - strand, within ABIE40_RS03255at 646.486 kb on + strand, within ABIE40_RS03255at 646.488 kb on + strand, within ABIE40_RS03255at 646.488 kb on + strand, within ABIE40_RS03255at 646.488 kb on + strand, within ABIE40_RS03255at 646.488 kb on + strand, within ABIE40_RS03255at 646.488 kb on + strand, within ABIE40_RS03255at 646.489 kb on - strand, within ABIE40_RS03255at 646.489 kb on - strand, within ABIE40_RS03255at 646.489 kb on - strand, within ABIE40_RS03255at 646.489 kb on - strand, within ABIE40_RS03255

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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644,550 + +0.0
644,551 - -0.7
644,551 - +0.1
644,551 - +0.8
644,551 - -0.2
644,748 + +0.6
644,748 + +0.2
644,821 - +0.0
644,821 - -2.9
644,882 - -2.1
644,882 - -0.5
644,883 + +1.0
644,883 + -0.3
644,884 - +3.9
644,988 + -1.3
644,989 - -2.0
644,989 - +1.9
644,989 - +0.7
644,989 - +0.2
644,998 - -0.9
644,998 - -0.3
645,117 + +0.5
645,117 + +0.7
645,117 + +0.6
645,117 + +1.7
645,117 + -1.0
645,118 - -0.5
645,118 - -0.0
645,232 + +0.2
645,276 + +0.2
645,276 + +0.4
645,277 - -1.1
645,277 - +0.1
645,283 + +0.1
645,325 + -2.8
645,325 + -0.1
645,326 - +0.6
645,326 - +2.1
645,326 - +0.9
645,337 + +0.5
645,352 - -0.1
645,354 + +0.5
645,354 + +0.2
645,354 + -0.0
645,354 + +0.3
645,354 + +0.5
645,354 + +0.7
645,354 + +0.7
645,354 + -0.0
645,355 - +0.3
645,355 - -1.1
645,355 - +0.4
645,355 - +3.7
645,355 - +1.9
645,433 + -0.1
645,433 + -2.3
645,433 + +0.9
645,433 + +0.5
645,433 + +0.5
645,434 - +0.6
645,434 - -0.2
645,434 - +0.8
645,434 - -1.3
645,527 + ABIE40_RS03250 0.40 -0.8
645,527 + ABIE40_RS03250 0.40 -2.1
645,820 + -3.7
645,820 + +1.3
645,820 + +0.7
645,820 + -0.4
645,821 - ABIE40_RS03255 0.10 +1.2
645,832 - ABIE40_RS03255 0.11 -0.6
645,900 + ABIE40_RS03255 0.16 -2.1
645,901 - ABIE40_RS03255 0.16 +0.7
645,901 - ABIE40_RS03255 0.16 +1.9
645,972 + ABIE40_RS03255 0.22 -0.4
645,972 + ABIE40_RS03255 0.22 +0.3
645,973 - ABIE40_RS03255 0.22 +1.7
645,973 - ABIE40_RS03255 0.22 -2.5
645,973 - ABIE40_RS03255 0.22 +0.8
645,973 - ABIE40_RS03255 0.22 -0.1
646,057 + ABIE40_RS03255 0.28 +2.6
646,057 + ABIE40_RS03255 0.28 +0.5
646,057 + ABIE40_RS03255 0.28 -1.2
646,057 + ABIE40_RS03255 0.28 -0.6
646,057 + ABIE40_RS03255 0.28 -0.8
646,058 - ABIE40_RS03255 0.28 +0.4
646,058 - ABIE40_RS03255 0.28 -1.3
646,058 - ABIE40_RS03255 0.28 +1.9
646,058 - ABIE40_RS03255 0.28 -0.5
646,058 - ABIE40_RS03255 0.28 -0.3
646,058 - ABIE40_RS03255 0.28 +0.5
646,058 - ABIE40_RS03255 0.28 -0.3
646,058 - ABIE40_RS03255 0.28 -1.2
646,058 - ABIE40_RS03255 0.28 -0.9
646,059 + ABIE40_RS03255 0.28 -3.0
646,059 + ABIE40_RS03255 0.28 +1.3
646,060 - ABIE40_RS03255 0.29 +0.3
646,060 - ABIE40_RS03255 0.29 +0.8
646,161 + ABIE40_RS03255 0.36 -0.5
646,207 + ABIE40_RS03255 0.40 -0.3
646,217 + ABIE40_RS03255 0.41 -0.4
646,218 + ABIE40_RS03255 0.41 +1.3
646,218 + ABIE40_RS03255 0.41 -2.1
646,219 - ABIE40_RS03255 0.41 +1.3
646,219 - ABIE40_RS03255 0.41 -0.0
646,219 - ABIE40_RS03255 0.41 +0.2
646,219 - ABIE40_RS03255 0.41 -1.0
646,219 - ABIE40_RS03255 0.41 -1.1
646,486 + ABIE40_RS03255 0.62 -0.1
646,488 + ABIE40_RS03255 0.62 -0.9
646,488 + ABIE40_RS03255 0.62 +0.2
646,488 + ABIE40_RS03255 0.62 +0.5
646,488 + ABIE40_RS03255 0.62 -1.0
646,488 + ABIE40_RS03255 0.62 -2.3
646,489 - ABIE40_RS03255 0.62 -0.2
646,489 - ABIE40_RS03255 0.62 +1.2
646,489 - ABIE40_RS03255 0.62 +0.8
646,489 - ABIE40_RS03255 0.62 +0.2

Or see this region's nucleotide sequence