Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02425 and ABIE40_RS02430 are separated by 30 nucleotides ABIE40_RS02430 and ABIE40_RS02435 are separated by 2 nucleotides ABIE40_RS02435 and ABIE40_RS02440 are separated by 142 nucleotides
ABIE40_RS02425: ABIE40_RS02425 - MATE family efflux transporter, at 480,055 to 481,401
_RS02425
ABIE40_RS02430: ABIE40_RS02430 - CAP domain-containing protein, at 481,432 to 481,929
_RS02430
ABIE40_RS02435: ABIE40_RS02435 - DUF6460 domain-containing protein, at 481,932 to 482,198
_RS02435
ABIE40_RS02440: ABIE40_RS02440 - tetratricopeptide repeat protein, at 482,341 to 483,273
_RS02440
Position (kb) 481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 480.941 kb on + strand, within ABIE40_RS02425 at 480.941 kb on + strand, within ABIE40_RS02425 at 480.941 kb on + strand, within ABIE40_RS02425 at 480.941 kb on + strand, within ABIE40_RS02425 at 480.941 kb on + strand, within ABIE40_RS02425 at 480.941 kb on + strand, within ABIE40_RS02425 at 480.942 kb on - strand, within ABIE40_RS02425 at 480.942 kb on - strand, within ABIE40_RS02425 at 480.942 kb on - strand, within ABIE40_RS02425 at 480.942 kb on - strand, within ABIE40_RS02425 at 480.942 kb on - strand, within ABIE40_RS02425 at 480.942 kb on - strand, within ABIE40_RS02425 at 480.942 kb on - strand, within ABIE40_RS02425 at 480.942 kb on - strand, within ABIE40_RS02425 at 480.986 kb on + strand, within ABIE40_RS02425 at 480.986 kb on + strand, within ABIE40_RS02425 at 480.986 kb on + strand, within ABIE40_RS02425 at 480.987 kb on - strand, within ABIE40_RS02425 at 481.051 kb on + strand, within ABIE40_RS02425 at 481.051 kb on + strand, within ABIE40_RS02425 at 481.051 kb on + strand, within ABIE40_RS02425 at 481.052 kb on - strand, within ABIE40_RS02425 at 481.263 kb on + strand, within ABIE40_RS02425 at 481.263 kb on + strand, within ABIE40_RS02425 at 481.264 kb on - strand, within ABIE40_RS02425 at 481.375 kb on + strand at 481.375 kb on + strand at 481.376 kb on - strand at 481.376 kb on - strand at 481.392 kb on + strand at 481.457 kb on + strand at 481.457 kb on + strand at 481.457 kb on + strand at 481.457 kb on + strand at 481.458 kb on - strand at 481.482 kb on + strand, within ABIE40_RS02430 at 481.482 kb on + strand, within ABIE40_RS02430 at 481.483 kb on - strand, within ABIE40_RS02430 at 481.509 kb on + strand, within ABIE40_RS02430 at 481.511 kb on + strand, within ABIE40_RS02430 at 481.780 kb on + strand, within ABIE40_RS02430 at 481.781 kb on - strand, within ABIE40_RS02430 at 481.897 kb on + strand at 481.942 kb on + strand at 481.942 kb on + strand at 481.943 kb on - strand at 482.071 kb on + strand, within ABIE40_RS02435 at 482.083 kb on + strand, within ABIE40_RS02435 at 482.084 kb on - strand, within ABIE40_RS02435 at 482.084 kb on - strand, within ABIE40_RS02435 at 482.223 kb on + strand at 482.224 kb on - strand at 482.282 kb on + strand at 482.395 kb on + strand at 482.396 kb on - strand at 482.396 kb on - strand at 482.506 kb on + strand, within ABIE40_RS02440 at 482.507 kb on - strand, within ABIE40_RS02440 at 482.651 kb on - strand, within ABIE40_RS02440 at 482.674 kb on + strand, within ABIE40_RS02440 at 482.674 kb on + strand, within ABIE40_RS02440 at 482.674 kb on + strand, within ABIE40_RS02440 at 482.674 kb on + strand, within ABIE40_RS02440 at 482.674 kb on + strand, within ABIE40_RS02440 at 482.674 kb on + strand, within ABIE40_RS02440 at 482.675 kb on - strand, within ABIE40_RS02440 at 482.675 kb on - strand, within ABIE40_RS02440 at 482.675 kb on - strand, within ABIE40_RS02440 at 482.706 kb on + strand, within ABIE40_RS02440 at 482.706 kb on + strand, within ABIE40_RS02440 at 482.717 kb on - strand, within ABIE40_RS02440 at 482.767 kb on + strand, within ABIE40_RS02440 at 482.767 kb on + strand, within ABIE40_RS02440 at 482.768 kb on - strand, within ABIE40_RS02440 at 482.848 kb on + strand, within ABIE40_RS02440 at 482.848 kb on + strand, within ABIE40_RS02440 at 482.848 kb on + strand, within ABIE40_RS02440 at 482.849 kb on - strand, within ABIE40_RS02440 at 482.849 kb on - strand, within ABIE40_RS02440 at 482.896 kb on + strand, within ABIE40_RS02440 at 482.897 kb on - strand, within ABIE40_RS02440 at 482.897 kb on - strand, within ABIE40_RS02440 at 482.897 kb on - strand, within ABIE40_RS02440 at 483.007 kb on + strand, within ABIE40_RS02440 at 483.008 kb on - strand, within ABIE40_RS02440 at 483.008 kb on - strand, within ABIE40_RS02440 at 483.008 kb on - strand, within ABIE40_RS02440 at 483.008 kb on - strand, within ABIE40_RS02440 at 483.008 kb on - strand, within ABIE40_RS02440 at 483.151 kb on + strand, within ABIE40_RS02440 at 483.151 kb on + strand, within ABIE40_RS02440 at 483.151 kb on + strand, within ABIE40_RS02440 at 483.151 kb on + strand, within ABIE40_RS02440 at 483.151 kb on + strand, within ABIE40_RS02440 at 483.151 kb on + strand, within ABIE40_RS02440 at 483.152 kb on - strand, within ABIE40_RS02440 at 483.152 kb on - strand, within ABIE40_RS02440 at 483.152 kb on - strand, within ABIE40_RS02440 at 483.152 kb on - strand, within ABIE40_RS02440 at 483.152 kb on - strand, within ABIE40_RS02440 at 483.152 kb on - strand, within ABIE40_RS02440
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 480,941 + ABIE40_RS02425 0.66 +2.8 480,941 + ABIE40_RS02425 0.66 -2.4 480,941 + ABIE40_RS02425 0.66 +0.6 480,941 + ABIE40_RS02425 0.66 +0.4 480,941 + ABIE40_RS02425 0.66 -0.2 480,941 + ABIE40_RS02425 0.66 +0.5 480,942 - ABIE40_RS02425 0.66 -2.7 480,942 - ABIE40_RS02425 0.66 -0.1 480,942 - ABIE40_RS02425 0.66 -0.0 480,942 - ABIE40_RS02425 0.66 +2.0 480,942 - ABIE40_RS02425 0.66 -0.6 480,942 - ABIE40_RS02425 0.66 +0.3 480,942 - ABIE40_RS02425 0.66 -2.3 480,942 - ABIE40_RS02425 0.66 -1.6 480,986 + ABIE40_RS02425 0.69 +0.4 480,986 + ABIE40_RS02425 0.69 -0.5 480,986 + ABIE40_RS02425 0.69 -0.5 480,987 - ABIE40_RS02425 0.69 +0.7 481,051 + ABIE40_RS02425 0.74 -0.4 481,051 + ABIE40_RS02425 0.74 -1.1 481,051 + ABIE40_RS02425 0.74 -2.8 481,052 - ABIE40_RS02425 0.74 +0.8 481,263 + ABIE40_RS02425 0.90 +3.3 481,263 + ABIE40_RS02425 0.90 +0.6 481,264 - ABIE40_RS02425 0.90 +0.6 481,375 + -0.4 481,375 + -1.0 481,376 - -0.9 481,376 - -1.0 481,392 + +0.8 481,457 + -2.6 481,457 + -1.2 481,457 + -1.0 481,457 + -1.6 481,458 - -0.3 481,482 + ABIE40_RS02430 0.10 +0.0 481,482 + ABIE40_RS02430 0.10 +0.4 481,483 - ABIE40_RS02430 0.10 +2.8 481,509 + ABIE40_RS02430 0.15 -0.2 481,511 + ABIE40_RS02430 0.16 +0.3 481,780 + ABIE40_RS02430 0.70 +0.7 481,781 - ABIE40_RS02430 0.70 -0.9 481,897 + +0.8 481,942 + +1.8 481,942 + -0.5 481,943 - +0.3 482,071 + ABIE40_RS02435 0.52 -1.1 482,083 + ABIE40_RS02435 0.57 -1.8 482,084 - ABIE40_RS02435 0.57 -2.5 482,084 - ABIE40_RS02435 0.57 +1.6 482,223 + -0.8 482,224 - -1.3 482,282 + -0.1 482,395 + -0.7 482,396 - +1.3 482,396 - -1.7 482,506 + ABIE40_RS02440 0.18 -1.3 482,507 - ABIE40_RS02440 0.18 -1.8 482,651 - ABIE40_RS02440 0.33 -0.3 482,674 + ABIE40_RS02440 0.36 -0.3 482,674 + ABIE40_RS02440 0.36 -0.5 482,674 + ABIE40_RS02440 0.36 +0.1 482,674 + ABIE40_RS02440 0.36 +0.1 482,674 + ABIE40_RS02440 0.36 +1.1 482,674 + ABIE40_RS02440 0.36 +0.1 482,675 - ABIE40_RS02440 0.36 -0.0 482,675 - ABIE40_RS02440 0.36 +1.1 482,675 - ABIE40_RS02440 0.36 +0.5 482,706 + ABIE40_RS02440 0.39 +0.4 482,706 + ABIE40_RS02440 0.39 +0.6 482,717 - ABIE40_RS02440 0.40 +0.4 482,767 + ABIE40_RS02440 0.46 -0.4 482,767 + ABIE40_RS02440 0.46 +0.2 482,768 - ABIE40_RS02440 0.46 +0.3 482,848 + ABIE40_RS02440 0.54 +1.2 482,848 + ABIE40_RS02440 0.54 -0.5 482,848 + ABIE40_RS02440 0.54 +1.8 482,849 - ABIE40_RS02440 0.54 +1.8 482,849 - ABIE40_RS02440 0.54 -0.7 482,896 + ABIE40_RS02440 0.59 +1.6 482,897 - ABIE40_RS02440 0.60 +1.3 482,897 - ABIE40_RS02440 0.60 +0.0 482,897 - ABIE40_RS02440 0.60 +0.3 483,007 + ABIE40_RS02440 0.71 -0.5 483,008 - ABIE40_RS02440 0.71 +0.6 483,008 - ABIE40_RS02440 0.71 +0.5 483,008 - ABIE40_RS02440 0.71 -0.4 483,008 - ABIE40_RS02440 0.71 +1.8 483,008 - ABIE40_RS02440 0.71 +0.8 483,151 + ABIE40_RS02440 0.87 +0.3 483,151 + ABIE40_RS02440 0.87 +1.2 483,151 + ABIE40_RS02440 0.87 -1.0 483,151 + ABIE40_RS02440 0.87 -0.9 483,151 + ABIE40_RS02440 0.87 -0.9 483,151 + ABIE40_RS02440 0.87 +1.0 483,152 - ABIE40_RS02440 0.87 -1.7 483,152 - ABIE40_RS02440 0.87 -1.3 483,152 - ABIE40_RS02440 0.87 +1.2 483,152 - ABIE40_RS02440 0.87 -0.8 483,152 - ABIE40_RS02440 0.87 -0.2 483,152 - ABIE40_RS02440 0.87 +1.3
Or see this region's nucleotide sequence