Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS26585 and ABIE40_RS26590 overlap by 85 nucleotides ABIE40_RS26590 and ABIE40_RS26595 are separated by 224 nucleotides
ABIE40_RS26585: ABIE40_RS26585 - FAD/NAD(P)-binding protein, at 31,880 to 33,616
_RS26585
ABIE40_RS26590: ABIE40_RS26590 - MOSC domain-containing protein, at 33,532 to 34,431
_RS26590
ABIE40_RS26595: ABIE40_RS26595 - pilus assembly protein TadG-related protein, at 34,656 to 36,011
_RS26595
Position (kb) 33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 32.674 kb on + strand, within ABIE40_RS26585 at 32.674 kb on + strand, within ABIE40_RS26585 at 32.675 kb on - strand, within ABIE40_RS26585 at 32.676 kb on + strand, within ABIE40_RS26585 at 32.676 kb on + strand, within ABIE40_RS26585 at 32.677 kb on - strand, within ABIE40_RS26585 at 32.677 kb on - strand, within ABIE40_RS26585 at 32.677 kb on - strand, within ABIE40_RS26585 at 32.677 kb on - strand, within ABIE40_RS26585 at 32.677 kb on - strand, within ABIE40_RS26585 at 32.680 kb on + strand, within ABIE40_RS26585 at 32.680 kb on + strand, within ABIE40_RS26585 at 32.681 kb on - strand, within ABIE40_RS26585 at 32.825 kb on - strand, within ABIE40_RS26585 at 32.871 kb on + strand, within ABIE40_RS26585 at 32.939 kb on + strand, within ABIE40_RS26585 at 33.017 kb on - strand, within ABIE40_RS26585 at 33.047 kb on + strand, within ABIE40_RS26585 at 33.047 kb on + strand, within ABIE40_RS26585 at 33.047 kb on + strand, within ABIE40_RS26585 at 33.048 kb on - strand, within ABIE40_RS26585 at 33.108 kb on + strand, within ABIE40_RS26585 at 33.134 kb on + strand, within ABIE40_RS26585 at 33.414 kb on - strand, within ABIE40_RS26585 at 33.466 kb on - strand at 33.466 kb on - strand at 33.482 kb on - strand at 33.529 kb on + strand at 33.567 kb on + strand at 33.581 kb on - strand at 33.604 kb on + strand at 33.614 kb on + strand at 33.614 kb on + strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.615 kb on - strand at 33.651 kb on + strand, within ABIE40_RS26590 at 33.843 kb on + strand, within ABIE40_RS26590 at 33.843 kb on + strand, within ABIE40_RS26590 at 33.844 kb on - strand, within ABIE40_RS26590 at 33.883 kb on + strand, within ABIE40_RS26590 at 33.883 kb on + strand, within ABIE40_RS26590 at 33.884 kb on - strand, within ABIE40_RS26590 at 33.908 kb on + strand, within ABIE40_RS26590 at 33.970 kb on + strand, within ABIE40_RS26590 at 34.178 kb on - strand, within ABIE40_RS26590 at 34.252 kb on + strand, within ABIE40_RS26590 at 34.252 kb on + strand, within ABIE40_RS26590 at 34.252 kb on + strand, within ABIE40_RS26590 at 34.252 kb on + strand, within ABIE40_RS26590 at 34.253 kb on - strand, within ABIE40_RS26590 at 34.253 kb on - strand, within ABIE40_RS26590 at 34.253 kb on - strand, within ABIE40_RS26590 at 34.254 kb on + strand, within ABIE40_RS26590 at 34.312 kb on + strand, within ABIE40_RS26590 at 34.333 kb on + strand, within ABIE40_RS26590 at 34.334 kb on - strand, within ABIE40_RS26590 at 34.432 kb on + strand at 34.432 kb on + strand at 34.534 kb on - strand at 34.606 kb on - strand at 34.657 kb on + strand at 34.658 kb on - strand at 34.658 kb on - strand at 34.658 kb on - strand at 34.658 kb on - strand at 34.739 kb on - strand at 34.903 kb on + strand, within ABIE40_RS26595 at 34.916 kb on + strand, within ABIE40_RS26595 at 34.916 kb on + strand, within ABIE40_RS26595 at 34.948 kb on - strand, within ABIE40_RS26595 at 35.050 kb on + strand, within ABIE40_RS26595 at 35.050 kb on + strand, within ABIE40_RS26595 at 35.050 kb on + strand, within ABIE40_RS26595 at 35.050 kb on + strand, within ABIE40_RS26595 at 35.050 kb on + strand, within ABIE40_RS26595 at 35.051 kb on - strand, within ABIE40_RS26595 at 35.076 kb on - strand, within ABIE40_RS26595 at 35.079 kb on + strand, within ABIE40_RS26595 at 35.080 kb on - strand, within ABIE40_RS26595 at 35.100 kb on - strand, within ABIE40_RS26595 at 35.100 kb on - strand, within ABIE40_RS26595 at 35.102 kb on - strand, within ABIE40_RS26595 at 35.102 kb on - strand, within ABIE40_RS26595 at 35.142 kb on - strand, within ABIE40_RS26595 at 35.159 kb on - strand, within ABIE40_RS26595 at 35.159 kb on - strand, within ABIE40_RS26595 at 35.159 kb on - strand, within ABIE40_RS26595 at 35.229 kb on - strand, within ABIE40_RS26595 at 35.229 kb on - strand, within ABIE40_RS26595 at 35.230 kb on + strand, within ABIE40_RS26595 at 35.230 kb on + strand, within ABIE40_RS26595 at 35.230 kb on + strand, within ABIE40_RS26595 at 35.231 kb on - strand, within ABIE40_RS26595 at 35.272 kb on + strand, within ABIE40_RS26595 at 35.272 kb on + strand, within ABIE40_RS26595 at 35.273 kb on - strand, within ABIE40_RS26595 at 35.273 kb on - strand, within ABIE40_RS26595 at 35.273 kb on - strand, within ABIE40_RS26595 at 35.273 kb on - strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.276 kb on + strand, within ABIE40_RS26595 at 35.277 kb on - strand, within ABIE40_RS26595 at 35.277 kb on - strand, within ABIE40_RS26595 at 35.277 kb on - strand, within ABIE40_RS26595 at 35.278 kb on + strand, within ABIE40_RS26595 at 35.278 kb on + strand, within ABIE40_RS26595 at 35.279 kb on - strand, within ABIE40_RS26595 at 35.327 kb on + strand, within ABIE40_RS26595 at 35.328 kb on - strand, within ABIE40_RS26595 at 35.328 kb on - strand, within ABIE40_RS26595 at 35.381 kb on + strand, within ABIE40_RS26595 at 35.409 kb on - strand, within ABIE40_RS26595 at 35.409 kb on - strand, within ABIE40_RS26595 at 35.409 kb on - strand, within ABIE40_RS26595 at 35.414 kb on + strand, within ABIE40_RS26595 at 35.414 kb on + strand, within ABIE40_RS26595 at 35.414 kb on + strand, within ABIE40_RS26595 at 35.415 kb on - strand, within ABIE40_RS26595 at 35.415 kb on - strand, within ABIE40_RS26595 at 35.419 kb on - strand, within ABIE40_RS26595 at 35.423 kb on + strand, within ABIE40_RS26595 at 35.423 kb on + strand, within ABIE40_RS26595 at 35.423 kb on + strand, within ABIE40_RS26595 at 35.424 kb on - strand, within ABIE40_RS26595
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 32,674 + ABIE40_RS26585 0.46 -0.2 32,674 + ABIE40_RS26585 0.46 -2.2 32,675 - ABIE40_RS26585 0.46 +0.6 32,676 + ABIE40_RS26585 0.46 +1.2 32,676 + ABIE40_RS26585 0.46 -0.1 32,677 - ABIE40_RS26585 0.46 -1.3 32,677 - ABIE40_RS26585 0.46 +0.3 32,677 - ABIE40_RS26585 0.46 +0.9 32,677 - ABIE40_RS26585 0.46 +0.9 32,677 - ABIE40_RS26585 0.46 +0.9 32,680 + ABIE40_RS26585 0.46 +2.9 32,680 + ABIE40_RS26585 0.46 -0.6 32,681 - ABIE40_RS26585 0.46 -0.6 32,825 - ABIE40_RS26585 0.54 +1.9 32,871 + ABIE40_RS26585 0.57 -1.6 32,939 + ABIE40_RS26585 0.61 -0.1 33,017 - ABIE40_RS26585 0.65 +0.5 33,047 + ABIE40_RS26585 0.67 -0.9 33,047 + ABIE40_RS26585 0.67 +0.1 33,047 + ABIE40_RS26585 0.67 +1.9 33,048 - ABIE40_RS26585 0.67 +0.2 33,108 + ABIE40_RS26585 0.71 -1.1 33,134 + ABIE40_RS26585 0.72 +0.6 33,414 - ABIE40_RS26585 0.88 +0.9 33,466 - +0.3 33,466 - +1.0 33,482 - -1.0 33,529 + -3.1 33,567 + -0.6 33,581 - -0.9 33,604 + -1.1 33,614 + +0.9 33,614 + +1.9 33,615 - -1.2 33,615 - -1.7 33,615 - -0.8 33,651 + ABIE40_RS26590 0.13 +0.9 33,843 + ABIE40_RS26590 0.35 -3.0 33,843 + ABIE40_RS26590 0.35 +0.3 33,844 - ABIE40_RS26590 0.35 -2.6 33,883 + ABIE40_RS26590 0.39 -0.5 33,883 + ABIE40_RS26590 0.39 +0.9 33,884 - ABIE40_RS26590 0.39 +0.6 33,908 + ABIE40_RS26590 0.42 -0.1 33,970 + ABIE40_RS26590 0.49 +0.3 34,178 - ABIE40_RS26590 0.72 -0.9 34,252 + ABIE40_RS26590 0.80 +0.3 34,252 + ABIE40_RS26590 0.80 +0.0 34,252 + ABIE40_RS26590 0.80 +0.3 34,252 + ABIE40_RS26590 0.80 -0.4 34,253 - ABIE40_RS26590 0.80 -1.4 34,253 - ABIE40_RS26590 0.80 +0.2 34,253 - ABIE40_RS26590 0.80 +1.0 34,254 + ABIE40_RS26590 0.80 +0.9 34,312 + ABIE40_RS26590 0.87 -0.1 34,333 + ABIE40_RS26590 0.89 -2.1 34,334 - ABIE40_RS26590 0.89 -0.9 34,432 + +1.9 34,432 + -0.6 34,534 - -0.9 34,606 - -0.1 34,657 + -0.3 34,658 - +0.5 34,658 - +0.9 34,658 - +0.0 34,658 - -0.3 34,739 - +0.9 34,903 + ABIE40_RS26595 0.18 +1.9 34,916 + ABIE40_RS26595 0.19 -1.0 34,916 + ABIE40_RS26595 0.19 +0.9 34,948 - ABIE40_RS26595 0.22 -1.8 35,050 + ABIE40_RS26595 0.29 -3.0 35,050 + ABIE40_RS26595 0.29 +0.9 35,050 + ABIE40_RS26595 0.29 -0.9 35,050 + ABIE40_RS26595 0.29 -1.3 35,050 + ABIE40_RS26595 0.29 -0.7 35,051 - ABIE40_RS26595 0.29 +0.9 35,076 - ABIE40_RS26595 0.31 -0.3 35,079 + ABIE40_RS26595 0.31 +0.7 35,080 - ABIE40_RS26595 0.31 +0.0 35,100 - ABIE40_RS26595 0.33 +0.7 35,100 - ABIE40_RS26595 0.33 +2.9 35,102 - ABIE40_RS26595 0.33 -0.4 35,102 - ABIE40_RS26595 0.33 -1.4 35,142 - ABIE40_RS26595 0.36 +2.9 35,159 - ABIE40_RS26595 0.37 +0.9 35,159 - ABIE40_RS26595 0.37 -0.1 35,159 - ABIE40_RS26595 0.37 +1.5 35,229 - ABIE40_RS26595 0.42 -0.6 35,229 - ABIE40_RS26595 0.42 -0.8 35,230 + ABIE40_RS26595 0.42 +0.7 35,230 + ABIE40_RS26595 0.42 -0.7 35,230 + ABIE40_RS26595 0.42 -0.1 35,231 - ABIE40_RS26595 0.42 -1.1 35,272 + ABIE40_RS26595 0.45 -1.9 35,272 + ABIE40_RS26595 0.45 -0.1 35,273 - ABIE40_RS26595 0.46 -0.1 35,273 - ABIE40_RS26595 0.46 -0.1 35,273 - ABIE40_RS26595 0.46 +0.5 35,273 - ABIE40_RS26595 0.46 -3.3 35,276 + ABIE40_RS26595 0.46 +0.6 35,276 + ABIE40_RS26595 0.46 -1.4 35,276 + ABIE40_RS26595 0.46 -2.3 35,276 + ABIE40_RS26595 0.46 -0.7 35,276 + ABIE40_RS26595 0.46 -0.3 35,276 + ABIE40_RS26595 0.46 +1.9 35,276 + ABIE40_RS26595 0.46 -0.8 35,276 + ABIE40_RS26595 0.46 +1.0 35,277 - ABIE40_RS26595 0.46 -0.9 35,277 - ABIE40_RS26595 0.46 -0.5 35,277 - ABIE40_RS26595 0.46 -2.7 35,278 + ABIE40_RS26595 0.46 +1.9 35,278 + ABIE40_RS26595 0.46 -1.7 35,279 - ABIE40_RS26595 0.46 +3.9 35,327 + ABIE40_RS26595 0.49 -0.1 35,328 - ABIE40_RS26595 0.50 +0.6 35,328 - ABIE40_RS26595 0.50 +2.1 35,381 + ABIE40_RS26595 0.53 +0.6 35,409 - ABIE40_RS26595 0.56 +0.9 35,409 - ABIE40_RS26595 0.56 -0.4 35,409 - ABIE40_RS26595 0.56 -1.0 35,414 + ABIE40_RS26595 0.56 +2.9 35,414 + ABIE40_RS26595 0.56 -1.9 35,414 + ABIE40_RS26595 0.56 +0.2 35,415 - ABIE40_RS26595 0.56 +2.5 35,415 - ABIE40_RS26595 0.56 -0.9 35,419 - ABIE40_RS26595 0.56 +0.9 35,423 + ABIE40_RS26595 0.57 -0.5 35,423 + ABIE40_RS26595 0.57 -1.3 35,423 + ABIE40_RS26595 0.57 -0.4 35,424 - ABIE40_RS26595 0.57 +0.2
Or see this region's nucleotide sequence