Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS06120

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS06110 and ABIE40_RS06115 are separated by 265 nucleotidesABIE40_RS06115 and ABIE40_RS06120 are separated by 115 nucleotidesABIE40_RS06120 and ABIE40_RS06125 are separated by 123 nucleotidesABIE40_RS06125 and ABIE40_RS06130 are separated by 54 nucleotides ABIE40_RS06110: ABIE40_RS06110 - HD domain-containing protein, at 1,201,153 to 1,201,797 _RS06110 ABIE40_RS06115: ABIE40_RS06115 - hypothetical protein, at 1,202,063 to 1,202,377 _RS06115 ABIE40_RS06120: ABIE40_RS06120 - superoxide dismutase family protein, at 1,202,493 to 1,203,008 _RS06120 ABIE40_RS06125: ABIE40_RS06125 - hypothetical protein, at 1,203,132 to 1,203,707 _RS06125 ABIE40_RS06130: ABIE40_RS06130 - mechanosensitive ion channel domain-containing protein, at 1,203,762 to 1,204,670 _RS06130 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1201.503 kb on + strand, within ABIE40_RS06110at 1201.668 kb on + strand, within ABIE40_RS06110at 1201.669 kb on - strand, within ABIE40_RS06110at 1201.746 kb on + strandat 1201.746 kb on + strandat 1201.746 kb on + strandat 1201.746 kb on + strandat 1201.747 kb on - strandat 1201.747 kb on - strandat 1201.747 kb on - strandat 1201.747 kb on - strandat 1201.834 kb on + strandat 1201.834 kb on + strandat 1201.834 kb on + strandat 1201.834 kb on + strandat 1201.835 kb on - strandat 1201.835 kb on - strandat 1201.835 kb on - strandat 1201.948 kb on - strandat 1201.948 kb on - strandat 1201.948 kb on - strandat 1201.955 kb on + strandat 1201.971 kb on + strandat 1201.981 kb on - strandat 1201.981 kb on - strandat 1202.023 kb on + strandat 1202.096 kb on + strand, within ABIE40_RS06115at 1202.096 kb on + strand, within ABIE40_RS06115at 1202.096 kb on + strand, within ABIE40_RS06115at 1202.096 kb on + strand, within ABIE40_RS06115at 1202.096 kb on + strand, within ABIE40_RS06115at 1202.097 kb on - strand, within ABIE40_RS06115at 1202.097 kb on - strand, within ABIE40_RS06115at 1202.097 kb on - strand, within ABIE40_RS06115at 1202.102 kb on + strand, within ABIE40_RS06115at 1202.102 kb on + strand, within ABIE40_RS06115at 1202.102 kb on + strand, within ABIE40_RS06115at 1202.103 kb on - strand, within ABIE40_RS06115at 1202.103 kb on - strand, within ABIE40_RS06115at 1202.145 kb on + strand, within ABIE40_RS06115at 1202.145 kb on + strand, within ABIE40_RS06115at 1202.283 kb on + strand, within ABIE40_RS06115at 1202.345 kb on + strand, within ABIE40_RS06115at 1202.345 kb on + strand, within ABIE40_RS06115at 1202.345 kb on + strand, within ABIE40_RS06115at 1202.346 kb on - strandat 1202.354 kb on + strandat 1202.354 kb on + strandat 1202.354 kb on + strandat 1202.355 kb on - strandat 1202.375 kb on + strandat 1202.375 kb on + strandat 1202.376 kb on - strandat 1202.376 kb on - strandat 1202.376 kb on - strandat 1202.376 kb on - strandat 1202.376 kb on - strandat 1202.376 kb on - strandat 1202.376 kb on - strandat 1202.396 kb on + strandat 1202.396 kb on + strandat 1202.396 kb on + strandat 1202.396 kb on + strandat 1202.396 kb on + strandat 1202.397 kb on - strandat 1202.397 kb on - strandat 1202.397 kb on - strandat 1202.397 kb on - strandat 1202.398 kb on + strandat 1202.399 kb on - strandat 1202.399 kb on - strandat 1202.832 kb on + strand, within ABIE40_RS06120at 1202.832 kb on + strand, within ABIE40_RS06120at 1202.832 kb on + strand, within ABIE40_RS06120at 1202.832 kb on + strand, within ABIE40_RS06120at 1202.833 kb on - strand, within ABIE40_RS06120at 1202.833 kb on - strand, within ABIE40_RS06120at 1202.833 kb on - strand, within ABIE40_RS06120at 1202.833 kb on - strand, within ABIE40_RS06120at 1202.833 kb on - strand, within ABIE40_RS06120at 1202.873 kb on + strand, within ABIE40_RS06120at 1202.874 kb on - strand, within ABIE40_RS06120at 1202.874 kb on - strand, within ABIE40_RS06120at 1202.874 kb on - strand, within ABIE40_RS06120at 1202.876 kb on + strand, within ABIE40_RS06120at 1202.876 kb on + strand, within ABIE40_RS06120at 1202.876 kb on + strand, within ABIE40_RS06120at 1202.876 kb on + strand, within ABIE40_RS06120at 1202.876 kb on + strand, within ABIE40_RS06120at 1202.877 kb on - strand, within ABIE40_RS06120at 1202.949 kb on + strand, within ABIE40_RS06120at 1203.007 kb on - strandat 1203.081 kb on + strandat 1203.139 kb on + strandat 1203.139 kb on + strandat 1203.140 kb on - strandat 1203.140 kb on - strandat 1203.140 kb on - strandat 1203.140 kb on - strandat 1203.140 kb on - strandat 1203.142 kb on + strandat 1203.142 kb on + strandat 1203.142 kb on + strandat 1203.143 kb on - strandat 1203.143 kb on - strandat 1203.145 kb on + strandat 1203.157 kb on + strandat 1203.157 kb on + strandat 1203.157 kb on + strandat 1203.157 kb on + strandat 1203.158 kb on - strandat 1203.346 kb on + strand, within ABIE40_RS06125at 1203.346 kb on + strand, within ABIE40_RS06125at 1203.347 kb on - strand, within ABIE40_RS06125at 1203.364 kb on + strand, within ABIE40_RS06125at 1203.364 kb on + strand, within ABIE40_RS06125at 1203.365 kb on - strand, within ABIE40_RS06125at 1203.428 kb on + strand, within ABIE40_RS06125at 1203.429 kb on - strand, within ABIE40_RS06125at 1203.430 kb on + strand, within ABIE40_RS06125at 1203.437 kb on + strand, within ABIE40_RS06125at 1203.438 kb on - strand, within ABIE40_RS06125at 1203.469 kb on + strand, within ABIE40_RS06125at 1203.470 kb on - strand, within ABIE40_RS06125at 1203.577 kb on + strand, within ABIE40_RS06125at 1203.578 kb on - strand, within ABIE40_RS06125at 1203.601 kb on + strand, within ABIE40_RS06125at 1203.601 kb on + strand, within ABIE40_RS06125at 1203.601 kb on + strand, within ABIE40_RS06125at 1203.602 kb on - strand, within ABIE40_RS06125at 1203.602 kb on - strand, within ABIE40_RS06125at 1203.602 kb on - strand, within ABIE40_RS06125at 1203.602 kb on - strand, within ABIE40_RS06125at 1203.628 kb on + strand, within ABIE40_RS06125at 1203.628 kb on + strand, within ABIE40_RS06125at 1203.628 kb on + strand, within ABIE40_RS06125at 1203.628 kb on + strand, within ABIE40_RS06125at 1203.629 kb on - strand, within ABIE40_RS06125at 1203.629 kb on - strand, within ABIE40_RS06125at 1203.629 kb on - strand, within ABIE40_RS06125at 1203.692 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,201,503 + ABIE40_RS06110 0.54 +1.0
1,201,668 + ABIE40_RS06110 0.80 -1.3
1,201,669 - ABIE40_RS06110 0.80 -1.0
1,201,746 + -0.2
1,201,746 + -0.3
1,201,746 + -0.3
1,201,746 + +1.2
1,201,747 - +0.4
1,201,747 - -0.5
1,201,747 - -1.2
1,201,747 - +0.7
1,201,834 + -3.2
1,201,834 + +1.6
1,201,834 + -0.9
1,201,834 + +0.1
1,201,835 - +0.3
1,201,835 - +0.3
1,201,835 - +0.4
1,201,948 - -0.8
1,201,948 - +1.1
1,201,948 - +1.0
1,201,955 + -1.0
1,201,971 + -0.1
1,201,981 - -0.8
1,201,981 - +1.6
1,202,023 + +2.2
1,202,096 + ABIE40_RS06115 0.10 -1.8
1,202,096 + ABIE40_RS06115 0.10 -1.5
1,202,096 + ABIE40_RS06115 0.10 -0.7
1,202,096 + ABIE40_RS06115 0.10 +0.0
1,202,096 + ABIE40_RS06115 0.10 -0.2
1,202,097 - ABIE40_RS06115 0.11 +0.4
1,202,097 - ABIE40_RS06115 0.11 -0.3
1,202,097 - ABIE40_RS06115 0.11 -1.2
1,202,102 + ABIE40_RS06115 0.12 +0.0
1,202,102 + ABIE40_RS06115 0.12 +0.2
1,202,102 + ABIE40_RS06115 0.12 -0.2
1,202,103 - ABIE40_RS06115 0.13 +1.0
1,202,103 - ABIE40_RS06115 0.13 +1.7
1,202,145 + ABIE40_RS06115 0.26 +1.3
1,202,145 + ABIE40_RS06115 0.26 +1.5
1,202,283 + ABIE40_RS06115 0.70 +0.3
1,202,345 + ABIE40_RS06115 0.90 -0.4
1,202,345 + ABIE40_RS06115 0.90 -0.2
1,202,345 + ABIE40_RS06115 0.90 +0.0
1,202,346 - -1.6
1,202,354 + -0.7
1,202,354 + -1.0
1,202,354 + +0.7
1,202,355 - -1.3
1,202,375 + -0.2
1,202,375 + -0.6
1,202,376 - +2.0
1,202,376 - -0.9
1,202,376 - -0.3
1,202,376 - +0.0
1,202,376 - -0.0
1,202,376 - +0.1
1,202,376 - -1.8
1,202,396 + +0.7
1,202,396 + +0.1
1,202,396 + +0.8
1,202,396 + +0.4
1,202,396 + -0.1
1,202,397 - -0.0
1,202,397 - +2.4
1,202,397 - -0.9
1,202,397 - -0.8
1,202,398 + +0.0
1,202,399 - -1.6
1,202,399 - -1.3
1,202,832 + ABIE40_RS06120 0.66 -0.4
1,202,832 + ABIE40_RS06120 0.66 -0.1
1,202,832 + ABIE40_RS06120 0.66 -2.1
1,202,832 + ABIE40_RS06120 0.66 +0.3
1,202,833 - ABIE40_RS06120 0.66 -0.8
1,202,833 - ABIE40_RS06120 0.66 +1.3
1,202,833 - ABIE40_RS06120 0.66 -0.0
1,202,833 - ABIE40_RS06120 0.66 -0.6
1,202,833 - ABIE40_RS06120 0.66 +2.0
1,202,873 + ABIE40_RS06120 0.74 -0.7
1,202,874 - ABIE40_RS06120 0.74 +0.8
1,202,874 - ABIE40_RS06120 0.74 -1.0
1,202,874 - ABIE40_RS06120 0.74 -1.0
1,202,876 + ABIE40_RS06120 0.74 +0.1
1,202,876 + ABIE40_RS06120 0.74 -0.0
1,202,876 + ABIE40_RS06120 0.74 +0.5
1,202,876 + ABIE40_RS06120 0.74 -0.2
1,202,876 + ABIE40_RS06120 0.74 +0.5
1,202,877 - ABIE40_RS06120 0.74 -0.8
1,202,949 + ABIE40_RS06120 0.88 +0.1
1,203,007 - +0.7
1,203,081 + +0.8
1,203,139 + +0.6
1,203,139 + -2.0
1,203,140 - +0.1
1,203,140 - -0.4
1,203,140 - -0.5
1,203,140 - +0.6
1,203,140 - -0.0
1,203,142 + +1.2
1,203,142 + -0.8
1,203,142 + -0.2
1,203,143 - +0.0
1,203,143 - +1.8
1,203,145 + +0.1
1,203,157 + -0.0
1,203,157 + -0.2
1,203,157 + -0.1
1,203,157 + -1.4
1,203,158 - -0.1
1,203,346 + ABIE40_RS06125 0.37 +0.4
1,203,346 + ABIE40_RS06125 0.37 +2.1
1,203,347 - ABIE40_RS06125 0.37 +1.3
1,203,364 + ABIE40_RS06125 0.40 -0.3
1,203,364 + ABIE40_RS06125 0.40 +1.0
1,203,365 - ABIE40_RS06125 0.40 -0.5
1,203,428 + ABIE40_RS06125 0.51 -0.6
1,203,429 - ABIE40_RS06125 0.52 -0.0
1,203,430 + ABIE40_RS06125 0.52 +0.9
1,203,437 + ABIE40_RS06125 0.53 -0.2
1,203,438 - ABIE40_RS06125 0.53 +0.8
1,203,469 + ABIE40_RS06125 0.59 +0.7
1,203,470 - ABIE40_RS06125 0.59 -0.4
1,203,577 + ABIE40_RS06125 0.77 +0.1
1,203,578 - ABIE40_RS06125 0.77 -1.1
1,203,601 + ABIE40_RS06125 0.81 +0.1
1,203,601 + ABIE40_RS06125 0.81 -0.6
1,203,601 + ABIE40_RS06125 0.81 -0.2
1,203,602 - ABIE40_RS06125 0.82 -0.3
1,203,602 - ABIE40_RS06125 0.82 +0.4
1,203,602 - ABIE40_RS06125 0.82 +0.8
1,203,602 - ABIE40_RS06125 0.82 -0.1
1,203,628 + ABIE40_RS06125 0.86 -0.2
1,203,628 + ABIE40_RS06125 0.86 -0.1
1,203,628 + ABIE40_RS06125 0.86 -0.7
1,203,628 + ABIE40_RS06125 0.86 -1.6
1,203,629 - ABIE40_RS06125 0.86 +1.2
1,203,629 - ABIE40_RS06125 0.86 +0.8
1,203,629 - ABIE40_RS06125 0.86 -1.3
1,203,692 - -0.3

Or see this region's nucleotide sequence