Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30945 and ABIE40_RS30950 overlap by 4 nucleotides ABIE40_RS30950 and ABIE40_RS30955 overlap by 4 nucleotides
ABIE40_RS30945: ABIE40_RS30945 - NAD-dependent epimerase/dehydratase family protein, at 883,681 to 884,787
_RS30945
ABIE40_RS30950: ABIE40_RS30950 - NAD-dependent epimerase/dehydratase family protein, at 884,784 to 886,826
_RS30950
ABIE40_RS30955: ABIE40_RS30955 - glycosyltransferase family 4 protein, at 886,823 to 887,944
_RS30955
Position (kb) 884
885
886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 883.901 kb on + strand, within ABIE40_RS30945 at 883.901 kb on + strand, within ABIE40_RS30945 at 883.901 kb on + strand, within ABIE40_RS30945 at 883.901 kb on + strand, within ABIE40_RS30945 at 883.901 kb on + strand, within ABIE40_RS30945 at 883.902 kb on - strand, within ABIE40_RS30945 at 883.902 kb on - strand, within ABIE40_RS30945 at 883.902 kb on - strand, within ABIE40_RS30945 at 883.902 kb on - strand, within ABIE40_RS30945 at 883.919 kb on + strand, within ABIE40_RS30945 at 883.920 kb on - strand, within ABIE40_RS30945 at 883.935 kb on + strand, within ABIE40_RS30945 at 883.935 kb on + strand, within ABIE40_RS30945 at 883.935 kb on + strand, within ABIE40_RS30945 at 883.936 kb on - strand, within ABIE40_RS30945 at 883.936 kb on - strand, within ABIE40_RS30945 at 883.936 kb on - strand, within ABIE40_RS30945 at 883.939 kb on + strand, within ABIE40_RS30945 at 883.939 kb on + strand, within ABIE40_RS30945 at 883.954 kb on + strand, within ABIE40_RS30945 at 884.050 kb on + strand, within ABIE40_RS30945 at 884.118 kb on + strand, within ABIE40_RS30945 at 884.120 kb on + strand, within ABIE40_RS30945 at 884.120 kb on + strand, within ABIE40_RS30945 at 884.120 kb on + strand, within ABIE40_RS30945 at 884.121 kb on - strand, within ABIE40_RS30945 at 884.121 kb on - strand, within ABIE40_RS30945 at 884.121 kb on - strand, within ABIE40_RS30945 at 884.223 kb on + strand, within ABIE40_RS30945 at 884.230 kb on + strand, within ABIE40_RS30945 at 884.269 kb on + strand, within ABIE40_RS30945 at 884.269 kb on + strand, within ABIE40_RS30945 at 884.270 kb on - strand, within ABIE40_RS30945 at 884.270 kb on - strand, within ABIE40_RS30945 at 884.338 kb on + strand, within ABIE40_RS30945 at 884.338 kb on + strand, within ABIE40_RS30945 at 884.339 kb on - strand, within ABIE40_RS30945 at 884.402 kb on + strand, within ABIE40_RS30945 at 884.436 kb on - strand, within ABIE40_RS30945 at 884.436 kb on - strand, within ABIE40_RS30945 at 884.479 kb on - strand, within ABIE40_RS30945 at 884.479 kb on - strand, within ABIE40_RS30945 at 884.523 kb on + strand, within ABIE40_RS30945 at 884.523 kb on + strand, within ABIE40_RS30945 at 884.780 kb on + strand at 884.780 kb on + strand at 884.791 kb on + strand at 884.791 kb on + strand at 884.916 kb on + strand at 884.917 kb on - strand at 885.030 kb on + strand, within ABIE40_RS30950 at 885.135 kb on + strand, within ABIE40_RS30950 at 885.135 kb on + strand, within ABIE40_RS30950 at 885.243 kb on + strand, within ABIE40_RS30950 at 885.243 kb on + strand, within ABIE40_RS30950 at 885.244 kb on - strand, within ABIE40_RS30950 at 885.244 kb on - strand, within ABIE40_RS30950 at 885.455 kb on + strand, within ABIE40_RS30950 at 885.480 kb on - strand, within ABIE40_RS30950 at 885.492 kb on + strand, within ABIE40_RS30950 at 885.493 kb on - strand, within ABIE40_RS30950 at 885.576 kb on + strand, within ABIE40_RS30950 at 885.643 kb on - strand, within ABIE40_RS30950 at 885.728 kb on + strand, within ABIE40_RS30950 at 885.856 kb on + strand, within ABIE40_RS30950 at 886.034 kb on - strand, within ABIE40_RS30950 at 886.034 kb on - strand, within ABIE40_RS30950 at 886.101 kb on - strand, within ABIE40_RS30950 at 886.149 kb on + strand, within ABIE40_RS30950 at 886.149 kb on + strand, within ABIE40_RS30950 at 886.150 kb on - strand, within ABIE40_RS30950 at 886.189 kb on - strand, within ABIE40_RS30950 at 886.189 kb on - strand, within ABIE40_RS30950 at 886.194 kb on + strand, within ABIE40_RS30950 at 886.195 kb on - strand, within ABIE40_RS30950 at 886.296 kb on + strand, within ABIE40_RS30950 at 886.296 kb on + strand, within ABIE40_RS30950 at 886.309 kb on - strand, within ABIE40_RS30950 at 886.672 kb on - strand at 886.678 kb on + strand at 887.164 kb on + strand, within ABIE40_RS30955 at 887.165 kb on - strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.196 kb on + strand, within ABIE40_RS30955 at 887.197 kb on - strand, within ABIE40_RS30955 at 887.197 kb on - strand, within ABIE40_RS30955 at 887.414 kb on + strand, within ABIE40_RS30955 at 887.414 kb on + strand, within ABIE40_RS30955 at 887.414 kb on + strand, within ABIE40_RS30955 at 887.415 kb on - strand, within ABIE40_RS30955 at 887.415 kb on - strand, within ABIE40_RS30955
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 883,901 + ABIE40_RS30945 0.20 -0.3 883,901 + ABIE40_RS30945 0.20 -1.5 883,901 + ABIE40_RS30945 0.20 +2.1 883,901 + ABIE40_RS30945 0.20 -0.5 883,901 + ABIE40_RS30945 0.20 +0.2 883,902 - ABIE40_RS30945 0.20 +0.8 883,902 - ABIE40_RS30945 0.20 -0.5 883,902 - ABIE40_RS30945 0.20 -0.3 883,902 - ABIE40_RS30945 0.20 +0.4 883,919 + ABIE40_RS30945 0.21 +0.5 883,920 - ABIE40_RS30945 0.22 +0.1 883,935 + ABIE40_RS30945 0.23 +1.8 883,935 + ABIE40_RS30945 0.23 +0.0 883,935 + ABIE40_RS30945 0.23 +0.2 883,936 - ABIE40_RS30945 0.23 -0.9 883,936 - ABIE40_RS30945 0.23 -0.3 883,936 - ABIE40_RS30945 0.23 +1.5 883,939 + ABIE40_RS30945 0.23 -0.2 883,939 + ABIE40_RS30945 0.23 +0.1 883,954 + ABIE40_RS30945 0.25 +0.2 884,050 + ABIE40_RS30945 0.33 +1.8 884,118 + ABIE40_RS30945 0.39 -0.1 884,120 + ABIE40_RS30945 0.40 +1.8 884,120 + ABIE40_RS30945 0.40 -0.5 884,120 + ABIE40_RS30945 0.40 +0.6 884,121 - ABIE40_RS30945 0.40 -1.0 884,121 - ABIE40_RS30945 0.40 +0.2 884,121 - ABIE40_RS30945 0.40 +0.5 884,223 + ABIE40_RS30945 0.49 +0.4 884,230 + ABIE40_RS30945 0.50 -1.8 884,269 + ABIE40_RS30945 0.53 -0.8 884,269 + ABIE40_RS30945 0.53 -0.2 884,270 - ABIE40_RS30945 0.53 +1.0 884,270 - ABIE40_RS30945 0.53 -1.8 884,338 + ABIE40_RS30945 0.59 +0.2 884,338 + ABIE40_RS30945 0.59 +1.0 884,339 - ABIE40_RS30945 0.59 +1.8 884,402 + ABIE40_RS30945 0.65 +0.8 884,436 - ABIE40_RS30945 0.68 +1.2 884,436 - ABIE40_RS30945 0.68 +0.8 884,479 - ABIE40_RS30945 0.72 +0.8 884,479 - ABIE40_RS30945 0.72 -1.0 884,523 + ABIE40_RS30945 0.76 -0.8 884,523 + ABIE40_RS30945 0.76 -0.2 884,780 + -1.0 884,780 + -1.0 884,791 + +0.8 884,791 + -0.8 884,916 + -0.7 884,917 - +0.4 885,030 + ABIE40_RS30950 0.12 +0.1 885,135 + ABIE40_RS30950 0.17 +0.2 885,135 + ABIE40_RS30950 0.17 -0.2 885,243 + ABIE40_RS30950 0.22 +1.2 885,243 + ABIE40_RS30950 0.22 -0.2 885,244 - ABIE40_RS30950 0.23 +0.6 885,244 - ABIE40_RS30950 0.23 -0.3 885,455 + ABIE40_RS30950 0.33 -3.4 885,480 - ABIE40_RS30950 0.34 -0.5 885,492 + ABIE40_RS30950 0.35 -0.9 885,493 - ABIE40_RS30950 0.35 +1.8 885,576 + ABIE40_RS30950 0.39 -2.5 885,643 - ABIE40_RS30950 0.42 -3.5 885,728 + ABIE40_RS30950 0.46 +0.3 885,856 + ABIE40_RS30950 0.52 +0.2 886,034 - ABIE40_RS30950 0.61 -0.7 886,034 - ABIE40_RS30950 0.61 -1.2 886,101 - ABIE40_RS30950 0.64 -0.7 886,149 + ABIE40_RS30950 0.67 -1.9 886,149 + ABIE40_RS30950 0.67 -0.2 886,150 - ABIE40_RS30950 0.67 +0.8 886,189 - ABIE40_RS30950 0.69 -1.3 886,189 - ABIE40_RS30950 0.69 +0.2 886,194 + ABIE40_RS30950 0.69 -0.1 886,195 - ABIE40_RS30950 0.69 -1.2 886,296 + ABIE40_RS30950 0.74 +1.8 886,296 + ABIE40_RS30950 0.74 +0.8 886,309 - ABIE40_RS30950 0.75 +0.6 886,672 - +2.8 886,678 + +0.5 887,164 + ABIE40_RS30955 0.30 -0.3 887,165 - ABIE40_RS30955 0.30 +0.1 887,196 + ABIE40_RS30955 0.33 +0.8 887,196 + ABIE40_RS30955 0.33 -0.0 887,196 + ABIE40_RS30955 0.33 +0.8 887,196 + ABIE40_RS30955 0.33 -0.2 887,196 + ABIE40_RS30955 0.33 +1.8 887,196 + ABIE40_RS30955 0.33 -2.9 887,197 - ABIE40_RS30955 0.33 +1.8 887,197 - ABIE40_RS30955 0.33 -0.5 887,414 + ABIE40_RS30955 0.53 +0.3 887,414 + ABIE40_RS30955 0.53 +0.8 887,414 + ABIE40_RS30955 0.53 -0.2 887,415 - ABIE40_RS30955 0.53 -1.3 887,415 - ABIE40_RS30955 0.53 +1.0
Or see this region's nucleotide sequence