Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03580

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03570 and ABIE40_RS03575 are separated by 8 nucleotidesABIE40_RS03575 and ABIE40_RS03580 are separated by 325 nucleotidesABIE40_RS03580 and ABIE40_RS03585 are separated by 136 nucleotides ABIE40_RS03570: ABIE40_RS03570 - hypothetical protein, at 709,977 to 710,408 _RS03570 ABIE40_RS03575: ABIE40_RS03575 - porin family protein, at 710,417 to 711,076 _RS03575 ABIE40_RS03580: ABIE40_RS03580 - L,D-transpeptidase, at 711,402 to 712,073 _RS03580 ABIE40_RS03585: ABIE40_RS03585 - L,D-transpeptidase, at 712,210 to 712,965 _RS03585 Position (kb) 711 712 713Strain fitness (log2 ratio) -2 -1 0 1 2 3at 710.418 kb on + strandat 710.418 kb on + strandat 710.419 kb on - strandat 710.461 kb on + strandat 710.461 kb on + strandat 710.461 kb on + strandat 710.462 kb on - strandat 710.462 kb on - strandat 710.511 kb on + strand, within ABIE40_RS03575at 710.511 kb on + strand, within ABIE40_RS03575at 710.511 kb on + strand, within ABIE40_RS03575at 710.511 kb on + strand, within ABIE40_RS03575at 710.511 kb on + strand, within ABIE40_RS03575at 710.511 kb on + strand, within ABIE40_RS03575at 710.512 kb on - strand, within ABIE40_RS03575at 710.523 kb on + strand, within ABIE40_RS03575at 710.523 kb on + strand, within ABIE40_RS03575at 710.523 kb on + strand, within ABIE40_RS03575at 710.523 kb on + strand, within ABIE40_RS03575at 710.676 kb on + strand, within ABIE40_RS03575at 710.676 kb on + strand, within ABIE40_RS03575at 710.676 kb on + strand, within ABIE40_RS03575at 710.677 kb on - strand, within ABIE40_RS03575at 710.799 kb on + strand, within ABIE40_RS03575at 710.799 kb on + strand, within ABIE40_RS03575at 710.800 kb on - strand, within ABIE40_RS03575at 710.800 kb on - strand, within ABIE40_RS03575at 710.815 kb on + strand, within ABIE40_RS03575at 710.815 kb on + strand, within ABIE40_RS03575at 710.815 kb on + strand, within ABIE40_RS03575at 710.815 kb on + strand, within ABIE40_RS03575at 710.816 kb on - strand, within ABIE40_RS03575at 710.816 kb on - strand, within ABIE40_RS03575at 710.817 kb on + strand, within ABIE40_RS03575at 710.817 kb on + strand, within ABIE40_RS03575at 710.817 kb on + strand, within ABIE40_RS03575at 710.817 kb on + strand, within ABIE40_RS03575at 710.817 kb on + strand, within ABIE40_RS03575at 710.817 kb on + strand, within ABIE40_RS03575at 710.818 kb on - strand, within ABIE40_RS03575at 710.818 kb on - strand, within ABIE40_RS03575at 710.818 kb on - strand, within ABIE40_RS03575at 710.883 kb on + strand, within ABIE40_RS03575at 710.884 kb on - strand, within ABIE40_RS03575at 710.884 kb on - strand, within ABIE40_RS03575at 710.887 kb on - strand, within ABIE40_RS03575at 710.887 kb on - strand, within ABIE40_RS03575at 710.887 kb on - strand, within ABIE40_RS03575at 710.960 kb on - strand, within ABIE40_RS03575at 710.976 kb on + strand, within ABIE40_RS03575at 710.986 kb on - strand, within ABIE40_RS03575at 710.986 kb on - strand, within ABIE40_RS03575at 711.108 kb on + strandat 711.109 kb on - strandat 711.109 kb on - strandat 711.123 kb on - strandat 711.131 kb on + strandat 711.131 kb on + strandat 711.131 kb on + strandat 711.131 kb on + strandat 711.132 kb on - strandat 711.393 kb on + strandat 711.517 kb on + strand, within ABIE40_RS03580at 711.517 kb on + strand, within ABIE40_RS03580at 711.634 kb on + strand, within ABIE40_RS03580at 711.636 kb on + strand, within ABIE40_RS03580at 711.636 kb on + strand, within ABIE40_RS03580at 711.636 kb on + strand, within ABIE40_RS03580at 711.636 kb on + strand, within ABIE40_RS03580at 711.636 kb on + strand, within ABIE40_RS03580at 711.636 kb on + strand, within ABIE40_RS03580at 711.636 kb on + strand, within ABIE40_RS03580at 711.636 kb on + strand, within ABIE40_RS03580at 711.637 kb on - strand, within ABIE40_RS03580at 711.637 kb on - strand, within ABIE40_RS03580at 711.637 kb on - strand, within ABIE40_RS03580at 711.637 kb on - strand, within ABIE40_RS03580at 711.637 kb on - strand, within ABIE40_RS03580at 711.637 kb on - strand, within ABIE40_RS03580at 711.637 kb on - strand, within ABIE40_RS03580at 711.637 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.641 kb on - strand, within ABIE40_RS03580at 711.856 kb on + strand, within ABIE40_RS03580at 711.856 kb on + strand, within ABIE40_RS03580at 711.857 kb on - strand, within ABIE40_RS03580at 711.857 kb on - strand, within ABIE40_RS03580at 711.857 kb on - strand, within ABIE40_RS03580at 711.857 kb on - strand, within ABIE40_RS03580at 711.857 kb on - strand, within ABIE40_RS03580at 711.857 kb on - strand, within ABIE40_RS03580at 711.862 kb on + strand, within ABIE40_RS03580at 711.862 kb on + strand, within ABIE40_RS03580at 711.862 kb on + strand, within ABIE40_RS03580at 711.862 kb on + strand, within ABIE40_RS03580at 711.862 kb on + strand, within ABIE40_RS03580at 711.863 kb on - strand, within ABIE40_RS03580at 711.863 kb on - strand, within ABIE40_RS03580at 711.863 kb on - strand, within ABIE40_RS03580at 711.863 kb on - strand, within ABIE40_RS03580at 711.863 kb on - strand, within ABIE40_RS03580at 711.863 kb on - strand, within ABIE40_RS03580at 711.863 kb on - strand, within ABIE40_RS03580at 711.863 kb on - strand, within ABIE40_RS03580at 711.863 kb on - strand, within ABIE40_RS03580at 711.869 kb on - strand, within ABIE40_RS03580at 711.918 kb on + strand, within ABIE40_RS03580at 711.918 kb on + strand, within ABIE40_RS03580at 711.919 kb on - strand, within ABIE40_RS03580at 711.919 kb on - strand, within ABIE40_RS03580at 712.064 kb on + strandat 712.064 kb on + strandat 712.065 kb on - strandat 712.065 kb on - strandat 712.065 kb on - strandat 712.065 kb on - strandat 712.065 kb on - strandat 712.065 kb on - strandat 712.065 kb on - strandat 712.065 kb on - strandat 712.078 kb on + strandat 712.089 kb on - strandat 712.211 kb on + strandat 712.211 kb on + strandat 712.212 kb on - strandat 712.212 kb on - strandat 712.212 kb on - strandat 712.250 kb on + strandat 712.251 kb on - strandat 712.361 kb on + strand, within ABIE40_RS03585at 712.361 kb on + strand, within ABIE40_RS03585at 712.361 kb on + strand, within ABIE40_RS03585at 712.361 kb on + strand, within ABIE40_RS03585at 712.362 kb on - strand, within ABIE40_RS03585at 712.362 kb on - strand, within ABIE40_RS03585at 712.362 kb on - strand, within ABIE40_RS03585at 712.362 kb on - strand, within ABIE40_RS03585at 712.362 kb on - strand, within ABIE40_RS03585at 712.362 kb on - strand, within ABIE40_RS03585at 712.362 kb on - strand, within ABIE40_RS03585at 712.362 kb on - strand, within ABIE40_RS03585at 712.418 kb on + strand, within ABIE40_RS03585at 712.418 kb on + strand, within ABIE40_RS03585at 712.419 kb on - strand, within ABIE40_RS03585at 712.419 kb on - strand, within ABIE40_RS03585at 712.419 kb on - strand, within ABIE40_RS03585at 712.419 kb on - strand, within ABIE40_RS03585at 712.544 kb on + strand, within ABIE40_RS03585at 712.544 kb on + strand, within ABIE40_RS03585at 712.611 kb on + strand, within ABIE40_RS03585at 712.634 kb on + strand, within ABIE40_RS03585at 712.635 kb on - strand, within ABIE40_RS03585at 712.635 kb on - strand, within ABIE40_RS03585at 712.757 kb on + strand, within ABIE40_RS03585at 712.802 kb on + strand, within ABIE40_RS03585at 712.802 kb on + strand, within ABIE40_RS03585at 712.980 kb on + strandat 713.054 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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710,418 + -0.2
710,418 + +0.0
710,419 - -0.1
710,461 + +0.3
710,461 + +1.9
710,461 + -0.3
710,462 - -0.8
710,462 - -0.1
710,511 + ABIE40_RS03575 0.14 +1.3
710,511 + ABIE40_RS03575 0.14 +0.8
710,511 + ABIE40_RS03575 0.14 +0.9
710,511 + ABIE40_RS03575 0.14 -1.2
710,511 + ABIE40_RS03575 0.14 +0.1
710,511 + ABIE40_RS03575 0.14 -1.1
710,512 - ABIE40_RS03575 0.14 +0.5
710,523 + ABIE40_RS03575 0.16 -1.3
710,523 + ABIE40_RS03575 0.16 -0.6
710,523 + ABIE40_RS03575 0.16 -0.8
710,523 + ABIE40_RS03575 0.16 +0.9
710,676 + ABIE40_RS03575 0.39 -0.1
710,676 + ABIE40_RS03575 0.39 -2.0
710,676 + ABIE40_RS03575 0.39 -0.0
710,677 - ABIE40_RS03575 0.39 -1.3
710,799 + ABIE40_RS03575 0.58 +0.0
710,799 + ABIE40_RS03575 0.58 -0.6
710,800 - ABIE40_RS03575 0.58 -2.1
710,800 - ABIE40_RS03575 0.58 -0.2
710,815 + ABIE40_RS03575 0.60 -0.1
710,815 + ABIE40_RS03575 0.60 -0.5
710,815 + ABIE40_RS03575 0.60 -1.4
710,815 + ABIE40_RS03575 0.60 +3.5
710,816 - ABIE40_RS03575 0.60 +0.3
710,816 - ABIE40_RS03575 0.60 -0.7
710,817 + ABIE40_RS03575 0.61 +0.3
710,817 + ABIE40_RS03575 0.61 -0.3
710,817 + ABIE40_RS03575 0.61 -1.0
710,817 + ABIE40_RS03575 0.61 -0.1
710,817 + ABIE40_RS03575 0.61 +0.6
710,817 + ABIE40_RS03575 0.61 -0.9
710,818 - ABIE40_RS03575 0.61 -0.7
710,818 - ABIE40_RS03575 0.61 -0.8
710,818 - ABIE40_RS03575 0.61 -1.0
710,883 + ABIE40_RS03575 0.71 -2.4
710,884 - ABIE40_RS03575 0.71 -0.5
710,884 - ABIE40_RS03575 0.71 -0.2
710,887 - ABIE40_RS03575 0.71 -1.3
710,887 - ABIE40_RS03575 0.71 +2.9
710,887 - ABIE40_RS03575 0.71 +0.0
710,960 - ABIE40_RS03575 0.82 +0.0
710,976 + ABIE40_RS03575 0.85 +1.2
710,986 - ABIE40_RS03575 0.86 -0.7
710,986 - ABIE40_RS03575 0.86 -0.1
711,108 + +0.1
711,109 - -0.3
711,109 - +0.5
711,123 - -0.6
711,131 + +1.0
711,131 + -0.0
711,131 + +0.3
711,131 + -0.2
711,132 - +1.4
711,393 + -1.0
711,517 + ABIE40_RS03580 0.17 +0.3
711,517 + ABIE40_RS03580 0.17 -0.7
711,634 + ABIE40_RS03580 0.35 -0.7
711,636 + ABIE40_RS03580 0.35 -1.1
711,636 + ABIE40_RS03580 0.35 +0.5
711,636 + ABIE40_RS03580 0.35 -0.9
711,636 + ABIE40_RS03580 0.35 +0.3
711,636 + ABIE40_RS03580 0.35 -1.1
711,636 + ABIE40_RS03580 0.35 +1.3
711,636 + ABIE40_RS03580 0.35 -0.2
711,636 + ABIE40_RS03580 0.35 -0.6
711,637 - ABIE40_RS03580 0.35 +0.3
711,637 - ABIE40_RS03580 0.35 +0.9
711,637 - ABIE40_RS03580 0.35 -0.4
711,637 - ABIE40_RS03580 0.35 +0.5
711,637 - ABIE40_RS03580 0.35 -0.3
711,637 - ABIE40_RS03580 0.35 +0.3
711,637 - ABIE40_RS03580 0.35 -0.6
711,637 - ABIE40_RS03580 0.35 -0.3
711,641 - ABIE40_RS03580 0.36 -0.5
711,641 - ABIE40_RS03580 0.36 +0.5
711,641 - ABIE40_RS03580 0.36 -0.2
711,641 - ABIE40_RS03580 0.36 +0.3
711,641 - ABIE40_RS03580 0.36 -0.0
711,641 - ABIE40_RS03580 0.36 -0.9
711,641 - ABIE40_RS03580 0.36 +0.8
711,641 - ABIE40_RS03580 0.36 -1.0
711,641 - ABIE40_RS03580 0.36 -0.8
711,641 - ABIE40_RS03580 0.36 +0.3
711,641 - ABIE40_RS03580 0.36 -0.5
711,641 - ABIE40_RS03580 0.36 +0.2
711,641 - ABIE40_RS03580 0.36 +0.1
711,641 - ABIE40_RS03580 0.36 +1.1
711,641 - ABIE40_RS03580 0.36 +0.4
711,641 - ABIE40_RS03580 0.36 +0.4
711,856 + ABIE40_RS03580 0.68 -0.4
711,856 + ABIE40_RS03580 0.68 -1.4
711,857 - ABIE40_RS03580 0.68 +0.3
711,857 - ABIE40_RS03580 0.68 -0.4
711,857 - ABIE40_RS03580 0.68 -0.7
711,857 - ABIE40_RS03580 0.68 -0.7
711,857 - ABIE40_RS03580 0.68 -0.5
711,857 - ABIE40_RS03580 0.68 -0.6
711,862 + ABIE40_RS03580 0.68 +3.5
711,862 + ABIE40_RS03580 0.68 -0.6
711,862 + ABIE40_RS03580 0.68 -0.9
711,862 + ABIE40_RS03580 0.68 -0.2
711,862 + ABIE40_RS03580 0.68 +0.1
711,863 - ABIE40_RS03580 0.69 +1.3
711,863 - ABIE40_RS03580 0.69 +0.2
711,863 - ABIE40_RS03580 0.69 -0.3
711,863 - ABIE40_RS03580 0.69 -0.3
711,863 - ABIE40_RS03580 0.69 +0.0
711,863 - ABIE40_RS03580 0.69 -1.8
711,863 - ABIE40_RS03580 0.69 -0.9
711,863 - ABIE40_RS03580 0.69 +1.2
711,863 - ABIE40_RS03580 0.69 +0.3
711,869 - ABIE40_RS03580 0.69 -0.6
711,918 + ABIE40_RS03580 0.77 +0.9
711,918 + ABIE40_RS03580 0.77 -2.2
711,919 - ABIE40_RS03580 0.77 +1.6
711,919 - ABIE40_RS03580 0.77 +0.2
712,064 + -0.9
712,064 + -0.1
712,065 - +0.7
712,065 - -1.2
712,065 - -0.3
712,065 - -1.1
712,065 - -0.5
712,065 - -0.4
712,065 - -0.9
712,065 - -0.4
712,078 + -0.8
712,089 - +0.4
712,211 + -0.6
712,211 + -1.2
712,212 - +0.6
712,212 - +0.4
712,212 - +0.0
712,250 + -0.9
712,251 - +0.2
712,361 + ABIE40_RS03585 0.20 +0.7
712,361 + ABIE40_RS03585 0.20 -0.7
712,361 + ABIE40_RS03585 0.20 +0.8
712,361 + ABIE40_RS03585 0.20 -1.2
712,362 - ABIE40_RS03585 0.20 -0.9
712,362 - ABIE40_RS03585 0.20 +1.2
712,362 - ABIE40_RS03585 0.20 +0.4
712,362 - ABIE40_RS03585 0.20 +0.3
712,362 - ABIE40_RS03585 0.20 -0.3
712,362 - ABIE40_RS03585 0.20 -0.2
712,362 - ABIE40_RS03585 0.20 +1.0
712,362 - ABIE40_RS03585 0.20 -0.1
712,418 + ABIE40_RS03585 0.28 +0.2
712,418 + ABIE40_RS03585 0.28 +0.4
712,419 - ABIE40_RS03585 0.28 -0.6
712,419 - ABIE40_RS03585 0.28 -0.1
712,419 - ABIE40_RS03585 0.28 +0.7
712,419 - ABIE40_RS03585 0.28 -0.1
712,544 + ABIE40_RS03585 0.44 -0.0
712,544 + ABIE40_RS03585 0.44 -1.7
712,611 + ABIE40_RS03585 0.53 -0.5
712,634 + ABIE40_RS03585 0.56 -1.1
712,635 - ABIE40_RS03585 0.56 -1.3
712,635 - ABIE40_RS03585 0.56 -0.5
712,757 + ABIE40_RS03585 0.72 -0.5
712,802 + ABIE40_RS03585 0.78 +0.3
712,802 + ABIE40_RS03585 0.78 -0.7
712,980 + -1.0
713,054 + +0.8

Or see this region's nucleotide sequence