Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03005 and ABIE40_RS03010 are separated by 12 nucleotides ABIE40_RS03010 and ABIE40_RS03015 overlap by 4 nucleotides ABIE40_RS03015 and ABIE40_RS03020 are separated by 105 nucleotides
ABIE40_RS03005: ABIE40_RS03005 - flagellar basal body L-ring protein FlgH, at 591,451 to 592,167
_RS03005
ABIE40_RS03010: ABIE40_RS03010 - flagellar basal body-associated FliL family protein, at 592,180 to 592,698
_RS03010
ABIE40_RS03015: ABIE40_RS03015 - flagellar type III secretion system pore protein FliP, at 592,695 to 593,432
_RS03015
ABIE40_RS03020: ABIE40_RS03020 - glycosyl transferase, at 593,538 to 595,454
_RS03020
Position (kb) 592
593
594 Strain fitness (log2 ratio) -2
-1
0
1
2 at 591.750 kb on + strand, within ABIE40_RS03005 at 591.750 kb on + strand, within ABIE40_RS03005 at 591.750 kb on + strand, within ABIE40_RS03005 at 591.751 kb on - strand, within ABIE40_RS03005 at 591.751 kb on - strand, within ABIE40_RS03005 at 591.804 kb on + strand, within ABIE40_RS03005 at 591.805 kb on - strand, within ABIE40_RS03005 at 591.844 kb on + strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.992 kb on + strand, within ABIE40_RS03005 at 592.057 kb on + strand, within ABIE40_RS03005 at 592.058 kb on - strand, within ABIE40_RS03005 at 592.087 kb on + strand, within ABIE40_RS03005 at 592.087 kb on + strand, within ABIE40_RS03005 at 592.088 kb on - strand, within ABIE40_RS03005 at 592.115 kb on + strand at 592.115 kb on + strand at 592.116 kb on - strand at 592.152 kb on - strand at 592.165 kb on + strand at 592.166 kb on - strand at 592.166 kb on - strand at 592.166 kb on - strand at 592.257 kb on - strand, within ABIE40_RS03010 at 592.402 kb on - strand, within ABIE40_RS03010 at 592.402 kb on - strand, within ABIE40_RS03010 at 592.403 kb on + strand, within ABIE40_RS03010 at 592.460 kb on - strand, within ABIE40_RS03010 at 592.460 kb on - strand, within ABIE40_RS03010 at 592.485 kb on - strand, within ABIE40_RS03010 at 592.537 kb on - strand, within ABIE40_RS03010 at 592.548 kb on + strand, within ABIE40_RS03010 at 592.548 kb on + strand, within ABIE40_RS03010 at 592.549 kb on - strand, within ABIE40_RS03010 at 592.550 kb on + strand, within ABIE40_RS03010 at 592.550 kb on + strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.559 kb on - strand, within ABIE40_RS03010 at 592.609 kb on + strand, within ABIE40_RS03010 at 592.609 kb on + strand, within ABIE40_RS03010 at 592.610 kb on - strand, within ABIE40_RS03010 at 592.614 kb on - strand, within ABIE40_RS03010 at 592.614 kb on - strand, within ABIE40_RS03010 at 592.661 kb on + strand at 592.709 kb on - strand at 592.781 kb on + strand, within ABIE40_RS03015 at 592.781 kb on + strand, within ABIE40_RS03015 at 592.820 kb on + strand, within ABIE40_RS03015 at 592.821 kb on - strand, within ABIE40_RS03015 at 592.821 kb on - strand, within ABIE40_RS03015 at 592.821 kb on - strand, within ABIE40_RS03015 at 592.937 kb on + strand, within ABIE40_RS03015 at 592.949 kb on + strand, within ABIE40_RS03015 at 592.949 kb on + strand, within ABIE40_RS03015 at 592.949 kb on + strand, within ABIE40_RS03015 at 592.950 kb on - strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.987 kb on - strand, within ABIE40_RS03015 at 592.987 kb on - strand, within ABIE40_RS03015 at 592.987 kb on - strand, within ABIE40_RS03015 at 593.196 kb on + strand, within ABIE40_RS03015 at 593.321 kb on + strand, within ABIE40_RS03015 at 593.321 kb on + strand, within ABIE40_RS03015 at 593.321 kb on + strand, within ABIE40_RS03015 at 593.321 kb on + strand, within ABIE40_RS03015 at 593.322 kb on - strand, within ABIE40_RS03015 at 593.322 kb on - strand, within ABIE40_RS03015 at 593.430 kb on + strand at 593.430 kb on + strand at 593.430 kb on + strand at 593.431 kb on - strand at 593.431 kb on - strand at 593.539 kb on + strand at 593.539 kb on + strand at 593.539 kb on + strand at 593.539 kb on + strand at 593.540 kb on - strand at 593.540 kb on - strand at 593.689 kb on + strand at 593.689 kb on + strand at 593.690 kb on - strand at 593.690 kb on - strand at 593.690 kb on - strand at 593.690 kb on - strand at 593.690 kb on - strand at 593.690 kb on - strand at 593.716 kb on + strand at 593.716 kb on + strand at 593.716 kb on + strand at 593.716 kb on + strand at 593.717 kb on - strand at 593.717 kb on - strand at 593.717 kb on - strand at 593.759 kb on + strand, within ABIE40_RS03020 at 593.768 kb on - strand, within ABIE40_RS03020 at 593.768 kb on - strand, within ABIE40_RS03020 at 593.951 kb on + strand, within ABIE40_RS03020 at 593.960 kb on + strand, within ABIE40_RS03020 at 593.960 kb on + strand, within ABIE40_RS03020 at 593.960 kb on + strand, within ABIE40_RS03020 at 593.961 kb on - strand, within ABIE40_RS03020 at 593.961 kb on - strand, within ABIE40_RS03020 at 593.978 kb on + strand, within ABIE40_RS03020 at 593.979 kb on - strand, within ABIE40_RS03020 at 594.165 kb on + strand, within ABIE40_RS03020 at 594.165 kb on + strand, within ABIE40_RS03020 at 594.166 kb on - strand, within ABIE40_RS03020 at 594.166 kb on - strand, within ABIE40_RS03020 at 594.191 kb on - strand, within ABIE40_RS03020 at 594.248 kb on - strand, within ABIE40_RS03020 at 594.248 kb on - strand, within ABIE40_RS03020 at 594.248 kb on - strand, within ABIE40_RS03020 at 594.281 kb on - strand, within ABIE40_RS03020 at 594.328 kb on + strand, within ABIE40_RS03020 at 594.328 kb on + strand, within ABIE40_RS03020 at 594.329 kb on - strand, within ABIE40_RS03020 at 594.329 kb on - strand, within ABIE40_RS03020 at 594.420 kb on - strand, within ABIE40_RS03020 at 594.420 kb on - strand, within ABIE40_RS03020 at 594.429 kb on - strand, within ABIE40_RS03020
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 591,750 + ABIE40_RS03005 0.42 -0.4 591,750 + ABIE40_RS03005 0.42 +0.2 591,750 + ABIE40_RS03005 0.42 -0.3 591,751 - ABIE40_RS03005 0.42 -1.3 591,751 - ABIE40_RS03005 0.42 -0.2 591,804 + ABIE40_RS03005 0.49 -0.7 591,805 - ABIE40_RS03005 0.49 -1.8 591,844 + ABIE40_RS03005 0.55 -0.3 591,845 - ABIE40_RS03005 0.55 +0.1 591,845 - ABIE40_RS03005 0.55 -1.2 591,845 - ABIE40_RS03005 0.55 -1.1 591,845 - ABIE40_RS03005 0.55 -0.1 591,845 - ABIE40_RS03005 0.55 -0.4 591,845 - ABIE40_RS03005 0.55 +1.2 591,992 + ABIE40_RS03005 0.75 -0.8 592,057 + ABIE40_RS03005 0.85 +2.4 592,058 - ABIE40_RS03005 0.85 -1.1 592,087 + ABIE40_RS03005 0.89 -0.8 592,087 + ABIE40_RS03005 0.89 -0.5 592,088 - ABIE40_RS03005 0.89 +0.7 592,115 + +1.1 592,115 + +0.4 592,116 - +0.2 592,152 - -0.6 592,165 + -0.9 592,166 - +0.2 592,166 - +0.0 592,166 - +0.9 592,257 - ABIE40_RS03010 0.15 -1.2 592,402 - ABIE40_RS03010 0.43 -0.3 592,402 - ABIE40_RS03010 0.43 +1.5 592,403 + ABIE40_RS03010 0.43 -0.5 592,460 - ABIE40_RS03010 0.54 -0.2 592,460 - ABIE40_RS03010 0.54 -0.2 592,485 - ABIE40_RS03010 0.59 +0.4 592,537 - ABIE40_RS03010 0.69 +0.8 592,548 + ABIE40_RS03010 0.71 +0.8 592,548 + ABIE40_RS03010 0.71 -1.0 592,549 - ABIE40_RS03010 0.71 +0.0 592,550 + ABIE40_RS03010 0.71 -1.2 592,550 + ABIE40_RS03010 0.71 -1.1 592,551 - ABIE40_RS03010 0.71 +0.0 592,551 - ABIE40_RS03010 0.71 -0.3 592,551 - ABIE40_RS03010 0.71 +0.1 592,551 - ABIE40_RS03010 0.71 +0.1 592,551 - ABIE40_RS03010 0.71 +0.1 592,551 - ABIE40_RS03010 0.71 -0.2 592,551 - ABIE40_RS03010 0.71 -0.5 592,551 - ABIE40_RS03010 0.71 -0.7 592,551 - ABIE40_RS03010 0.71 +0.5 592,559 - ABIE40_RS03010 0.73 +0.0 592,609 + ABIE40_RS03010 0.83 -0.9 592,609 + ABIE40_RS03010 0.83 -0.0 592,610 - ABIE40_RS03010 0.83 +0.4 592,614 - ABIE40_RS03010 0.84 -1.8 592,614 - ABIE40_RS03010 0.84 +0.4 592,661 + -0.8 592,709 - -1.0 592,781 + ABIE40_RS03015 0.12 -1.1 592,781 + ABIE40_RS03015 0.12 -0.6 592,820 + ABIE40_RS03015 0.17 -1.5 592,821 - ABIE40_RS03015 0.17 -0.8 592,821 - ABIE40_RS03015 0.17 +1.2 592,821 - ABIE40_RS03015 0.17 +1.5 592,937 + ABIE40_RS03015 0.33 -0.8 592,949 + ABIE40_RS03015 0.34 -0.6 592,949 + ABIE40_RS03015 0.34 -1.1 592,949 + ABIE40_RS03015 0.34 +0.6 592,950 - ABIE40_RS03015 0.35 -0.8 592,986 + ABIE40_RS03015 0.39 -2.5 592,986 + ABIE40_RS03015 0.39 -0.2 592,986 + ABIE40_RS03015 0.39 -0.5 592,986 + ABIE40_RS03015 0.39 +0.3 592,986 + ABIE40_RS03015 0.39 -0.3 592,986 + ABIE40_RS03015 0.39 -0.9 592,986 + ABIE40_RS03015 0.39 -1.4 592,986 + ABIE40_RS03015 0.39 -1.3 592,987 - ABIE40_RS03015 0.40 -1.2 592,987 - ABIE40_RS03015 0.40 -1.0 592,987 - ABIE40_RS03015 0.40 +0.2 593,196 + ABIE40_RS03015 0.68 -0.4 593,321 + ABIE40_RS03015 0.85 -0.2 593,321 + ABIE40_RS03015 0.85 +0.2 593,321 + ABIE40_RS03015 0.85 -0.1 593,321 + ABIE40_RS03015 0.85 -1.0 593,322 - ABIE40_RS03015 0.85 -1.8 593,322 - ABIE40_RS03015 0.85 -0.4 593,430 + +0.7 593,430 + +1.8 593,430 + -0.5 593,431 - -0.2 593,431 - -1.6 593,539 + -0.1 593,539 + +0.5 593,539 + +0.6 593,539 + +0.0 593,540 - +0.2 593,540 - +0.1 593,689 + +0.5 593,689 + -0.0 593,690 - -0.9 593,690 - -0.5 593,690 - +0.8 593,690 - -0.2 593,690 - +0.3 593,690 - +0.6 593,716 + -0.1 593,716 + -0.9 593,716 + -1.1 593,716 + -0.6 593,717 - +2.2 593,717 - +0.8 593,717 - -0.3 593,759 + ABIE40_RS03020 0.12 -0.3 593,768 - ABIE40_RS03020 0.12 -0.7 593,768 - ABIE40_RS03020 0.12 +0.7 593,951 + ABIE40_RS03020 0.22 -0.1 593,960 + ABIE40_RS03020 0.22 +0.6 593,960 + ABIE40_RS03020 0.22 +0.9 593,960 + ABIE40_RS03020 0.22 +0.3 593,961 - ABIE40_RS03020 0.22 +0.3 593,961 - ABIE40_RS03020 0.22 -0.1 593,978 + ABIE40_RS03020 0.23 -0.3 593,979 - ABIE40_RS03020 0.23 -2.2 594,165 + ABIE40_RS03020 0.33 +0.1 594,165 + ABIE40_RS03020 0.33 +0.1 594,166 - ABIE40_RS03020 0.33 -0.6 594,166 - ABIE40_RS03020 0.33 -0.8 594,191 - ABIE40_RS03020 0.34 -0.6 594,248 - ABIE40_RS03020 0.37 -1.4 594,248 - ABIE40_RS03020 0.37 -0.9 594,248 - ABIE40_RS03020 0.37 -0.1 594,281 - ABIE40_RS03020 0.39 -0.7 594,328 + ABIE40_RS03020 0.41 +0.8 594,328 + ABIE40_RS03020 0.41 -0.3 594,329 - ABIE40_RS03020 0.41 -2.1 594,329 - ABIE40_RS03020 0.41 +0.3 594,420 - ABIE40_RS03020 0.46 -0.1 594,420 - ABIE40_RS03020 0.46 -0.5 594,429 - ABIE40_RS03020 0.46 -0.7
Or see this region's nucleotide sequence