Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02985 and ABIE40_RS02990 are separated by 18 nucleotides ABIE40_RS02990 and ABIE40_RS02995 overlap by 4 nucleotides ABIE40_RS02995 and ABIE40_RS03000 overlap by 4 nucleotides ABIE40_RS03000 and ABIE40_RS03005 overlap by 4 nucleotides
ABIE40_RS02985: ABIE40_RS02985 - flagellar basal-body rod protein FlgG, at 588,505 to 589,293
_RS02985
ABIE40_RS02990: ABIE40_RS02990 - flagellar basal body P-ring formation chaperone FlgA, at 589,312 to 589,794
_RS02990
ABIE40_RS02995: ABIE40_RS02995 - flagellar basal body P-ring protein FlgI, at 589,791 to 590,915
_RS02995
ABIE40_RS03000: ABIE40_RS03000 - MotE family protein, at 590,912 to 591,454
_RS03000
ABIE40_RS03005: ABIE40_RS03005 - flagellar basal body L-ring protein FlgH, at 591,451 to 592,167
_RS03005
Position (kb) 589
590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 588.844 kb on + strand, within ABIE40_RS02985 at 588.845 kb on - strand, within ABIE40_RS02985 at 588.845 kb on - strand, within ABIE40_RS02985 at 588.904 kb on + strand, within ABIE40_RS02985 at 588.904 kb on + strand, within ABIE40_RS02985 at 588.904 kb on + strand, within ABIE40_RS02985 at 588.904 kb on + strand, within ABIE40_RS02985 at 588.905 kb on - strand, within ABIE40_RS02985 at 588.905 kb on - strand, within ABIE40_RS02985 at 588.905 kb on - strand, within ABIE40_RS02985 at 588.907 kb on - strand, within ABIE40_RS02985 at 588.907 kb on - strand, within ABIE40_RS02985 at 589.135 kb on + strand, within ABIE40_RS02985 at 589.135 kb on + strand, within ABIE40_RS02985 at 589.136 kb on - strand, within ABIE40_RS02985 at 589.136 kb on - strand, within ABIE40_RS02985 at 589.141 kb on + strand, within ABIE40_RS02985 at 589.141 kb on + strand, within ABIE40_RS02985 at 589.141 kb on + strand, within ABIE40_RS02985 at 589.142 kb on - strand, within ABIE40_RS02985 at 589.142 kb on - strand, within ABIE40_RS02985 at 589.156 kb on + strand, within ABIE40_RS02985 at 589.156 kb on + strand, within ABIE40_RS02985 at 589.190 kb on - strand, within ABIE40_RS02985 at 589.222 kb on + strand at 589.222 kb on + strand at 589.223 kb on - strand at 589.291 kb on + strand at 589.291 kb on + strand at 589.291 kb on + strand at 589.291 kb on + strand at 589.291 kb on + strand at 589.291 kb on + strand at 589.291 kb on + strand at 589.292 kb on - strand at 589.292 kb on - strand at 589.296 kb on + strand at 589.296 kb on + strand at 589.297 kb on - strand at 589.335 kb on + strand at 589.335 kb on + strand at 589.335 kb on + strand at 589.369 kb on + strand, within ABIE40_RS02990 at 589.370 kb on - strand, within ABIE40_RS02990 at 589.415 kb on - strand, within ABIE40_RS02990 at 589.441 kb on + strand, within ABIE40_RS02990 at 589.441 kb on + strand, within ABIE40_RS02990 at 589.442 kb on - strand, within ABIE40_RS02990 at 589.442 kb on - strand, within ABIE40_RS02990 at 589.442 kb on - strand, within ABIE40_RS02990 at 589.442 kb on - strand, within ABIE40_RS02990 at 589.513 kb on + strand, within ABIE40_RS02990 at 589.514 kb on - strand, within ABIE40_RS02990 at 589.606 kb on + strand, within ABIE40_RS02990 at 589.606 kb on + strand, within ABIE40_RS02990 at 589.607 kb on - strand, within ABIE40_RS02990 at 589.607 kb on - strand, within ABIE40_RS02990 at 589.608 kb on + strand, within ABIE40_RS02990 at 589.608 kb on + strand, within ABIE40_RS02990 at 589.609 kb on - strand, within ABIE40_RS02990 at 589.609 kb on - strand, within ABIE40_RS02990 at 589.609 kb on - strand, within ABIE40_RS02990 at 589.653 kb on + strand, within ABIE40_RS02990 at 589.653 kb on + strand, within ABIE40_RS02990 at 589.654 kb on - strand, within ABIE40_RS02990 at 589.752 kb on + strand at 589.752 kb on + strand at 589.752 kb on + strand at 589.752 kb on + strand at 589.753 kb on - strand at 589.753 kb on - strand at 589.892 kb on + strand at 589.936 kb on - strand, within ABIE40_RS02995 at 590.217 kb on + strand, within ABIE40_RS02995 at 590.217 kb on + strand, within ABIE40_RS02995 at 590.217 kb on + strand, within ABIE40_RS02995 at 590.218 kb on - strand, within ABIE40_RS02995 at 590.218 kb on - strand, within ABIE40_RS02995 at 590.245 kb on + strand, within ABIE40_RS02995 at 590.246 kb on - strand, within ABIE40_RS02995 at 590.436 kb on + strand, within ABIE40_RS02995 at 590.437 kb on - strand, within ABIE40_RS02995 at 590.437 kb on - strand, within ABIE40_RS02995 at 590.829 kb on - strand at 590.829 kb on - strand at 590.849 kb on + strand at 590.849 kb on + strand at 590.850 kb on - strand at 590.850 kb on - strand at 590.850 kb on - strand at 590.853 kb on - strand at 590.853 kb on - strand at 590.853 kb on - strand at 590.853 kb on - strand at 590.905 kb on + strand at 590.906 kb on - strand at 590.906 kb on - strand at 590.932 kb on + strand at 590.933 kb on - strand at 591.107 kb on + strand, within ABIE40_RS03000 at 591.107 kb on + strand, within ABIE40_RS03000 at 591.108 kb on - strand, within ABIE40_RS03000 at 591.108 kb on - strand, within ABIE40_RS03000 at 591.191 kb on + strand, within ABIE40_RS03000 at 591.192 kb on - strand, within ABIE40_RS03000 at 591.214 kb on + strand, within ABIE40_RS03000 at 591.215 kb on - strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.257 kb on + strand, within ABIE40_RS03000 at 591.258 kb on - strand, within ABIE40_RS03000 at 591.258 kb on - strand, within ABIE40_RS03000 at 591.265 kb on + strand, within ABIE40_RS03000 at 591.265 kb on + strand, within ABIE40_RS03000 at 591.266 kb on - strand, within ABIE40_RS03000 at 591.307 kb on + strand, within ABIE40_RS03000 at 591.433 kb on + strand at 591.433 kb on + strand at 591.434 kb on - strand at 591.434 kb on - strand at 591.434 kb on - strand at 591.456 kb on + strand at 591.456 kb on + strand at 591.456 kb on + strand at 591.456 kb on + strand at 591.456 kb on + strand at 591.457 kb on - strand at 591.574 kb on + strand, within ABIE40_RS03005 at 591.574 kb on + strand, within ABIE40_RS03005 at 591.575 kb on - strand, within ABIE40_RS03005 at 591.575 kb on - strand, within ABIE40_RS03005 at 591.575 kb on - strand, within ABIE40_RS03005 at 591.601 kb on + strand, within ABIE40_RS03005 at 591.634 kb on + strand, within ABIE40_RS03005 at 591.634 kb on + strand, within ABIE40_RS03005 at 591.634 kb on + strand, within ABIE40_RS03005 at 591.634 kb on + strand, within ABIE40_RS03005 at 591.635 kb on - strand, within ABIE40_RS03005 at 591.750 kb on + strand, within ABIE40_RS03005 at 591.750 kb on + strand, within ABIE40_RS03005 at 591.750 kb on + strand, within ABIE40_RS03005 at 591.751 kb on - strand, within ABIE40_RS03005 at 591.751 kb on - strand, within ABIE40_RS03005 at 591.804 kb on + strand, within ABIE40_RS03005 at 591.805 kb on - strand, within ABIE40_RS03005 at 591.844 kb on + strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005 at 591.845 kb on - strand, within ABIE40_RS03005
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 588,844 + ABIE40_RS02985 0.43 -0.1 588,845 - ABIE40_RS02985 0.43 -0.3 588,845 - ABIE40_RS02985 0.43 -1.9 588,904 + ABIE40_RS02985 0.51 -0.4 588,904 + ABIE40_RS02985 0.51 -0.7 588,904 + ABIE40_RS02985 0.51 +0.6 588,904 + ABIE40_RS02985 0.51 -0.8 588,905 - ABIE40_RS02985 0.51 -0.3 588,905 - ABIE40_RS02985 0.51 -0.9 588,905 - ABIE40_RS02985 0.51 +0.2 588,907 - ABIE40_RS02985 0.51 -3.0 588,907 - ABIE40_RS02985 0.51 +0.0 589,135 + ABIE40_RS02985 0.80 +0.2 589,135 + ABIE40_RS02985 0.80 -0.6 589,136 - ABIE40_RS02985 0.80 -0.2 589,136 - ABIE40_RS02985 0.80 -0.1 589,141 + ABIE40_RS02985 0.81 -1.2 589,141 + ABIE40_RS02985 0.81 -0.7 589,141 + ABIE40_RS02985 0.81 -0.3 589,142 - ABIE40_RS02985 0.81 +0.0 589,142 - ABIE40_RS02985 0.81 -0.5 589,156 + ABIE40_RS02985 0.83 -0.8 589,156 + ABIE40_RS02985 0.83 +1.5 589,190 - ABIE40_RS02985 0.87 +0.2 589,222 + +0.1 589,222 + -0.8 589,223 - -1.2 589,291 + -0.2 589,291 + +0.3 589,291 + -0.6 589,291 + +0.1 589,291 + -0.5 589,291 + +0.4 589,291 + -1.0 589,292 - -1.0 589,292 - -1.0 589,296 + +0.2 589,296 + +0.4 589,297 - -0.8 589,335 + -0.2 589,335 + -0.8 589,335 + -0.6 589,369 + ABIE40_RS02990 0.12 -0.6 589,370 - ABIE40_RS02990 0.12 -1.0 589,415 - ABIE40_RS02990 0.21 +0.8 589,441 + ABIE40_RS02990 0.27 -0.4 589,441 + ABIE40_RS02990 0.27 -3.1 589,442 - ABIE40_RS02990 0.27 -0.2 589,442 - ABIE40_RS02990 0.27 -0.2 589,442 - ABIE40_RS02990 0.27 +0.1 589,442 - ABIE40_RS02990 0.27 +0.9 589,513 + ABIE40_RS02990 0.42 -0.2 589,514 - ABIE40_RS02990 0.42 -0.8 589,606 + ABIE40_RS02990 0.61 -1.3 589,606 + ABIE40_RS02990 0.61 -1.0 589,607 - ABIE40_RS02990 0.61 +0.6 589,607 - ABIE40_RS02990 0.61 -0.0 589,608 + ABIE40_RS02990 0.61 -0.8 589,608 + ABIE40_RS02990 0.61 -1.2 589,609 - ABIE40_RS02990 0.61 -1.0 589,609 - ABIE40_RS02990 0.61 -0.7 589,609 - ABIE40_RS02990 0.61 +0.1 589,653 + ABIE40_RS02990 0.71 -2.0 589,653 + ABIE40_RS02990 0.71 +2.8 589,654 - ABIE40_RS02990 0.71 +0.2 589,752 + +0.1 589,752 + -1.4 589,752 + +0.1 589,752 + -1.0 589,753 - -0.0 589,753 - -0.7 589,892 + +2.1 589,936 - ABIE40_RS02995 0.13 -0.5 590,217 + ABIE40_RS02995 0.38 -0.2 590,217 + ABIE40_RS02995 0.38 +0.3 590,217 + ABIE40_RS02995 0.38 -1.6 590,218 - ABIE40_RS02995 0.38 -0.6 590,218 - ABIE40_RS02995 0.38 -1.0 590,245 + ABIE40_RS02995 0.40 -0.8 590,246 - ABIE40_RS02995 0.40 +0.8 590,436 + ABIE40_RS02995 0.57 +0.2 590,437 - ABIE40_RS02995 0.57 +0.1 590,437 - ABIE40_RS02995 0.57 +0.1 590,829 - +0.5 590,829 - -0.7 590,849 + +0.4 590,849 + -1.0 590,850 - -0.5 590,850 - +0.4 590,850 - -1.1 590,853 - -1.6 590,853 - -2.0 590,853 - -0.8 590,853 - -0.3 590,905 + -1.0 590,906 - -0.4 590,906 - +0.2 590,932 + -0.7 590,933 - -1.0 591,107 + ABIE40_RS03000 0.36 -0.7 591,107 + ABIE40_RS03000 0.36 -0.8 591,108 - ABIE40_RS03000 0.36 -2.2 591,108 - ABIE40_RS03000 0.36 -0.4 591,191 + ABIE40_RS03000 0.51 -0.7 591,192 - ABIE40_RS03000 0.52 -0.8 591,214 + ABIE40_RS03000 0.56 +0.1 591,215 - ABIE40_RS03000 0.56 -2.0 591,257 + ABIE40_RS03000 0.64 -0.7 591,257 + ABIE40_RS03000 0.64 -0.5 591,257 + ABIE40_RS03000 0.64 -0.8 591,257 + ABIE40_RS03000 0.64 -0.0 591,257 + ABIE40_RS03000 0.64 -0.3 591,257 + ABIE40_RS03000 0.64 -1.5 591,258 - ABIE40_RS03000 0.64 -1.0 591,258 - ABIE40_RS03000 0.64 +0.8 591,265 + ABIE40_RS03000 0.65 +0.2 591,265 + ABIE40_RS03000 0.65 -1.2 591,266 - ABIE40_RS03000 0.65 -1.4 591,307 + ABIE40_RS03000 0.73 -1.8 591,433 + -0.1 591,433 + -0.2 591,434 - +0.6 591,434 - +0.4 591,434 - +1.5 591,456 + -0.0 591,456 + -1.4 591,456 + -0.9 591,456 + +0.0 591,456 + -1.0 591,457 - -0.7 591,574 + ABIE40_RS03005 0.17 -0.6 591,574 + ABIE40_RS03005 0.17 -1.5 591,575 - ABIE40_RS03005 0.17 +0.0 591,575 - ABIE40_RS03005 0.17 -0.1 591,575 - ABIE40_RS03005 0.17 -1.0 591,601 + ABIE40_RS03005 0.21 +1.8 591,634 + ABIE40_RS03005 0.26 -0.2 591,634 + ABIE40_RS03005 0.26 -0.2 591,634 + ABIE40_RS03005 0.26 -1.3 591,634 + ABIE40_RS03005 0.26 -1.4 591,635 - ABIE40_RS03005 0.26 -0.2 591,750 + ABIE40_RS03005 0.42 -0.4 591,750 + ABIE40_RS03005 0.42 +0.2 591,750 + ABIE40_RS03005 0.42 -0.3 591,751 - ABIE40_RS03005 0.42 -1.3 591,751 - ABIE40_RS03005 0.42 -0.2 591,804 + ABIE40_RS03005 0.49 -0.7 591,805 - ABIE40_RS03005 0.49 -1.8 591,844 + ABIE40_RS03005 0.55 -0.3 591,845 - ABIE40_RS03005 0.55 +0.1 591,845 - ABIE40_RS03005 0.55 -1.2 591,845 - ABIE40_RS03005 0.55 -1.1 591,845 - ABIE40_RS03005 0.55 -0.1 591,845 - ABIE40_RS03005 0.55 -0.4 591,845 - ABIE40_RS03005 0.55 +1.2
Or see this region's nucleotide sequence