Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20490

Experiment: DMSO control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS20485 and ABIE40_RS20490 are separated by 73 nucleotidesABIE40_RS20490 and ABIE40_RS20495 are separated by 5 nucleotides ABIE40_RS20485: ABIE40_RS20485 - ATP-binding cassette domain-containing protein, at 200,460 to 202,151 _RS20485 ABIE40_RS20490: ABIE40_RS20490 - cytochrome ubiquinol oxidase subunit I, at 202,225 to 203,805 _RS20490 ABIE40_RS20495: ABIE40_RS20495 - cytochrome d ubiquinol oxidase subunit II, at 203,811 to 204,962 _RS20495 Position (kb) 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 201.539 kb on - strand, within ABIE40_RS20485at 201.542 kb on + strand, within ABIE40_RS20485at 201.543 kb on - strand, within ABIE40_RS20485at 201.543 kb on - strand, within ABIE40_RS20485at 201.543 kb on - strand, within ABIE40_RS20485at 201.543 kb on - strand, within ABIE40_RS20485at 201.547 kb on + strand, within ABIE40_RS20485at 201.547 kb on + strand, within ABIE40_RS20485at 201.548 kb on - strand, within ABIE40_RS20485at 201.555 kb on - strand, within ABIE40_RS20485at 201.566 kb on + strand, within ABIE40_RS20485at 201.797 kb on + strand, within ABIE40_RS20485at 201.797 kb on + strand, within ABIE40_RS20485at 201.798 kb on - strand, within ABIE40_RS20485at 201.959 kb on + strand, within ABIE40_RS20485at 201.960 kb on - strand, within ABIE40_RS20485at 202.085 kb on + strandat 202.086 kb on - strandat 202.197 kb on + strandat 202.239 kb on - strandat 202.280 kb on - strandat 202.280 kb on - strandat 202.345 kb on + strandat 202.345 kb on + strandat 202.345 kb on + strandat 202.345 kb on + strandat 202.345 kb on + strandat 202.345 kb on + strandat 202.345 kb on + strandat 202.345 kb on + strandat 202.345 kb on + strandat 202.346 kb on - strandat 202.346 kb on - strandat 202.346 kb on - strandat 202.346 kb on - strandat 202.346 kb on - strandat 202.346 kb on - strandat 202.346 kb on - strandat 202.346 kb on - strandat 202.346 kb on - strandat 202.346 kb on - strandat 202.346 kb on - strandat 202.474 kb on + strand, within ABIE40_RS20490at 202.475 kb on - strand, within ABIE40_RS20490at 202.477 kb on + strand, within ABIE40_RS20490at 202.477 kb on + strand, within ABIE40_RS20490at 202.477 kb on + strand, within ABIE40_RS20490at 202.477 kb on + strand, within ABIE40_RS20490at 202.477 kb on + strand, within ABIE40_RS20490at 202.477 kb on + strand, within ABIE40_RS20490at 202.478 kb on - strand, within ABIE40_RS20490at 202.478 kb on - strand, within ABIE40_RS20490at 202.478 kb on - strand, within ABIE40_RS20490at 202.483 kb on + strand, within ABIE40_RS20490at 202.483 kb on + strand, within ABIE40_RS20490at 202.483 kb on + strand, within ABIE40_RS20490at 202.483 kb on + strand, within ABIE40_RS20490at 202.483 kb on + strand, within ABIE40_RS20490at 202.483 kb on + strand, within ABIE40_RS20490at 202.483 kb on + strand, within ABIE40_RS20490at 202.484 kb on - strand, within ABIE40_RS20490at 202.484 kb on - strand, within ABIE40_RS20490at 202.484 kb on - strand, within ABIE40_RS20490at 202.486 kb on + strand, within ABIE40_RS20490at 202.486 kb on + strand, within ABIE40_RS20490at 202.486 kb on + strand, within ABIE40_RS20490at 202.487 kb on - strand, within ABIE40_RS20490at 202.487 kb on - strand, within ABIE40_RS20490at 202.497 kb on + strand, within ABIE40_RS20490at 202.631 kb on + strand, within ABIE40_RS20490at 202.801 kb on + strand, within ABIE40_RS20490at 202.801 kb on + strand, within ABIE40_RS20490at 202.844 kb on - strand, within ABIE40_RS20490at 202.844 kb on - strand, within ABIE40_RS20490at 202.844 kb on - strand, within ABIE40_RS20490at 202.844 kb on - strand, within ABIE40_RS20490at 202.955 kb on - strand, within ABIE40_RS20490at 203.089 kb on - strand, within ABIE40_RS20490at 203.089 kb on - strand, within ABIE40_RS20490at 203.089 kb on - strand, within ABIE40_RS20490at 203.200 kb on + strand, within ABIE40_RS20490at 203.200 kb on + strand, within ABIE40_RS20490at 203.200 kb on + strand, within ABIE40_RS20490at 203.201 kb on - strand, within ABIE40_RS20490at 203.201 kb on - strand, within ABIE40_RS20490at 203.201 kb on - strand, within ABIE40_RS20490at 203.296 kb on + strand, within ABIE40_RS20490at 203.317 kb on + strand, within ABIE40_RS20490at 203.317 kb on + strand, within ABIE40_RS20490at 203.318 kb on - strand, within ABIE40_RS20490at 203.318 kb on - strand, within ABIE40_RS20490at 203.318 kb on - strand, within ABIE40_RS20490at 203.494 kb on + strand, within ABIE40_RS20490at 203.495 kb on - strand, within ABIE40_RS20490at 203.495 kb on - strand, within ABIE40_RS20490at 203.683 kb on + strandat 203.683 kb on + strandat 203.683 kb on + strandat 203.683 kb on + strandat 203.683 kb on + strandat 203.683 kb on + strandat 203.684 kb on - strandat 203.684 kb on - strandat 203.685 kb on + strandat 203.686 kb on - strandat 203.686 kb on - strandat 203.835 kb on + strandat 203.835 kb on + strandat 203.840 kb on + strandat 203.841 kb on - strandat 203.841 kb on - strandat 203.924 kb on + strandat 203.924 kb on + strandat 203.990 kb on + strand, within ABIE40_RS20495at 204.060 kb on + strand, within ABIE40_RS20495at 204.084 kb on + strand, within ABIE40_RS20495at 204.084 kb on + strand, within ABIE40_RS20495at 204.085 kb on - strand, within ABIE40_RS20495at 204.141 kb on + strand, within ABIE40_RS20495at 204.142 kb on - strand, within ABIE40_RS20495at 204.158 kb on + strand, within ABIE40_RS20495at 204.295 kb on - strand, within ABIE40_RS20495at 204.327 kb on + strand, within ABIE40_RS20495at 204.328 kb on - strand, within ABIE40_RS20495at 204.432 kb on + strand, within ABIE40_RS20495at 204.432 kb on + strand, within ABIE40_RS20495at 204.515 kb on + strand, within ABIE40_RS20495at 204.516 kb on - strand, within ABIE40_RS20495at 204.516 kb on - strand, within ABIE40_RS20495at 204.516 kb on - strand, within ABIE40_RS20495at 204.516 kb on - strand, within ABIE40_RS20495at 204.516 kb on - strand, within ABIE40_RS20495at 204.516 kb on - strand, within ABIE40_RS20495at 204.597 kb on + strand, within ABIE40_RS20495at 204.598 kb on - strand, within ABIE40_RS20495at 204.598 kb on - strand, within ABIE40_RS20495at 204.606 kb on + strand, within ABIE40_RS20495at 204.607 kb on - strand, within ABIE40_RS20495at 204.607 kb on - strand, within ABIE40_RS20495at 204.607 kb on - strand, within ABIE40_RS20495at 204.607 kb on - strand, within ABIE40_RS20495at 204.734 kb on + strand, within ABIE40_RS20495at 204.735 kb on - strand, within ABIE40_RS20495

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
remove
201,539 - ABIE40_RS20485 0.64 +0.1
201,542 + ABIE40_RS20485 0.64 +0.1
201,543 - ABIE40_RS20485 0.64 -0.3
201,543 - ABIE40_RS20485 0.64 -0.3
201,543 - ABIE40_RS20485 0.64 +0.3
201,543 - ABIE40_RS20485 0.64 -1.2
201,547 + ABIE40_RS20485 0.64 -0.7
201,547 + ABIE40_RS20485 0.64 -0.6
201,548 - ABIE40_RS20485 0.64 +0.6
201,555 - ABIE40_RS20485 0.65 -0.3
201,566 + ABIE40_RS20485 0.65 +1.1
201,797 + ABIE40_RS20485 0.79 -1.2
201,797 + ABIE40_RS20485 0.79 +0.2
201,798 - ABIE40_RS20485 0.79 +0.4
201,959 + ABIE40_RS20485 0.89 +0.2
201,960 - ABIE40_RS20485 0.89 -0.7
202,085 + -2.9
202,086 - -0.4
202,197 + -0.3
202,239 - -0.7
202,280 - -0.3
202,280 - -1.1
202,345 + -0.5
202,345 + +0.8
202,345 + -0.4
202,345 + +0.6
202,345 + -1.2
202,345 + -0.9
202,345 + -1.1
202,345 + -0.8
202,345 + +1.0
202,346 - -0.9
202,346 - -0.0
202,346 - -0.1
202,346 - +0.8
202,346 - -0.2
202,346 - -0.7
202,346 - -0.4
202,346 - +0.0
202,346 - -1.1
202,346 - -0.6
202,346 - -2.2
202,474 + ABIE40_RS20490 0.16 -1.4
202,475 - ABIE40_RS20490 0.16 +1.1
202,477 + ABIE40_RS20490 0.16 +1.4
202,477 + ABIE40_RS20490 0.16 -0.2
202,477 + ABIE40_RS20490 0.16 +0.2
202,477 + ABIE40_RS20490 0.16 +0.6
202,477 + ABIE40_RS20490 0.16 -0.1
202,477 + ABIE40_RS20490 0.16 -0.1
202,478 - ABIE40_RS20490 0.16 -1.6
202,478 - ABIE40_RS20490 0.16 -0.2
202,478 - ABIE40_RS20490 0.16 -1.5
202,483 + ABIE40_RS20490 0.16 -0.3
202,483 + ABIE40_RS20490 0.16 +0.3
202,483 + ABIE40_RS20490 0.16 +0.2
202,483 + ABIE40_RS20490 0.16 -0.6
202,483 + ABIE40_RS20490 0.16 -0.4
202,483 + ABIE40_RS20490 0.16 -0.4
202,483 + ABIE40_RS20490 0.16 +0.4
202,484 - ABIE40_RS20490 0.16 +0.2
202,484 - ABIE40_RS20490 0.16 -0.5
202,484 - ABIE40_RS20490 0.16 -0.4
202,486 + ABIE40_RS20490 0.17 +0.1
202,486 + ABIE40_RS20490 0.17 -1.0
202,486 + ABIE40_RS20490 0.17 +1.7
202,487 - ABIE40_RS20490 0.17 +0.4
202,487 - ABIE40_RS20490 0.17 -0.3
202,497 + ABIE40_RS20490 0.17 -0.0
202,631 + ABIE40_RS20490 0.26 -0.3
202,801 + ABIE40_RS20490 0.36 +0.5
202,801 + ABIE40_RS20490 0.36 +0.7
202,844 - ABIE40_RS20490 0.39 -2.0
202,844 - ABIE40_RS20490 0.39 +0.6
202,844 - ABIE40_RS20490 0.39 -2.2
202,844 - ABIE40_RS20490 0.39 +0.0
202,955 - ABIE40_RS20490 0.46 +0.9
203,089 - ABIE40_RS20490 0.55 +2.5
203,089 - ABIE40_RS20490 0.55 +0.5
203,089 - ABIE40_RS20490 0.55 -2.4
203,200 + ABIE40_RS20490 0.62 -0.2
203,200 + ABIE40_RS20490 0.62 +0.2
203,200 + ABIE40_RS20490 0.62 -1.0
203,201 - ABIE40_RS20490 0.62 -0.4
203,201 - ABIE40_RS20490 0.62 +0.1
203,201 - ABIE40_RS20490 0.62 +0.2
203,296 + ABIE40_RS20490 0.68 +1.0
203,317 + ABIE40_RS20490 0.69 -0.2
203,317 + ABIE40_RS20490 0.69 -0.4
203,318 - ABIE40_RS20490 0.69 +0.4
203,318 - ABIE40_RS20490 0.69 +0.9
203,318 - ABIE40_RS20490 0.69 +3.3
203,494 + ABIE40_RS20490 0.80 +0.7
203,495 - ABIE40_RS20490 0.80 -0.4
203,495 - ABIE40_RS20490 0.80 -0.2
203,683 + -0.9
203,683 + -0.1
203,683 + -0.1
203,683 + +0.1
203,683 + +1.9
203,683 + -1.4
203,684 - +0.7
203,684 - -0.2
203,685 + +0.1
203,686 - +0.3
203,686 - -0.9
203,835 + -1.5
203,835 + +0.3
203,840 + +0.1
203,841 - +0.5
203,841 - +0.3
203,924 + -0.2
203,924 + +0.7
203,990 + ABIE40_RS20495 0.16 +0.6
204,060 + ABIE40_RS20495 0.22 +0.2
204,084 + ABIE40_RS20495 0.24 +0.1
204,084 + ABIE40_RS20495 0.24 +0.5
204,085 - ABIE40_RS20495 0.24 +0.2
204,141 + ABIE40_RS20495 0.29 -1.4
204,142 - ABIE40_RS20495 0.29 -0.7
204,158 + ABIE40_RS20495 0.30 +0.1
204,295 - ABIE40_RS20495 0.42 +1.0
204,327 + ABIE40_RS20495 0.45 -0.9
204,328 - ABIE40_RS20495 0.45 +0.6
204,432 + ABIE40_RS20495 0.54 -0.9
204,432 + ABIE40_RS20495 0.54 +0.5
204,515 + ABIE40_RS20495 0.61 -0.4
204,516 - ABIE40_RS20495 0.61 +1.5
204,516 - ABIE40_RS20495 0.61 +0.0
204,516 - ABIE40_RS20495 0.61 -0.7
204,516 - ABIE40_RS20495 0.61 -0.6
204,516 - ABIE40_RS20495 0.61 +0.4
204,516 - ABIE40_RS20495 0.61 -1.7
204,597 + ABIE40_RS20495 0.68 -0.0
204,598 - ABIE40_RS20495 0.68 -1.7
204,598 - ABIE40_RS20495 0.68 +2.1
204,606 + ABIE40_RS20495 0.69 +0.1
204,607 - ABIE40_RS20495 0.69 +3.3
204,607 - ABIE40_RS20495 0.69 +0.2
204,607 - ABIE40_RS20495 0.69 -0.6
204,607 - ABIE40_RS20495 0.69 +0.5
204,734 + ABIE40_RS20495 0.80 -0.3
204,735 - ABIE40_RS20495 0.80 +0.1

Or see this region's nucleotide sequence