Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19665

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19660 and ABIE40_RS19665 are separated by 13 nucleotidesABIE40_RS19665 and ABIE40_RS19670 overlap by 4 nucleotidesABIE40_RS19670 and ABIE40_RS19675 overlap by 20 nucleotides ABIE40_RS19660: ABIE40_RS19660 - branched-chain amino acid ABC transporter permease, at 27,092 to 27,955 _RS19660 ABIE40_RS19665: ABIE40_RS19665 - branched-chain amino acid ABC transporter permease, at 27,969 to 28,973 _RS19665 ABIE40_RS19670: ABIE40_RS19670 - ABC transporter ATP-binding protein, at 28,970 to 29,734 _RS19670 ABIE40_RS19675: ABIE40_RS19675 - ABC transporter ATP-binding protein, at 29,715 to 30,431 _RS19675 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 27.131 kb on + strandat 27.132 kb on - strandat 27.233 kb on + strand, within ABIE40_RS19660at 27.234 kb on - strand, within ABIE40_RS19660at 27.234 kb on - strand, within ABIE40_RS19660at 27.234 kb on - strand, within ABIE40_RS19660at 27.234 kb on - strand, within ABIE40_RS19660at 27.236 kb on - strand, within ABIE40_RS19660at 27.246 kb on - strand, within ABIE40_RS19660at 27.246 kb on - strand, within ABIE40_RS19660at 27.353 kb on + strand, within ABIE40_RS19660at 27.353 kb on + strand, within ABIE40_RS19660at 27.353 kb on + strand, within ABIE40_RS19660at 27.353 kb on + strand, within ABIE40_RS19660at 27.354 kb on - strand, within ABIE40_RS19660at 27.354 kb on - strand, within ABIE40_RS19660at 27.354 kb on - strand, within ABIE40_RS19660at 27.354 kb on - strand, within ABIE40_RS19660at 27.354 kb on - strand, within ABIE40_RS19660at 27.354 kb on - strand, within ABIE40_RS19660at 27.425 kb on + strand, within ABIE40_RS19660at 27.426 kb on - strand, within ABIE40_RS19660at 27.426 kb on - strand, within ABIE40_RS19660at 27.426 kb on - strand, within ABIE40_RS19660at 27.659 kb on + strand, within ABIE40_RS19660at 27.659 kb on + strand, within ABIE40_RS19660at 27.659 kb on + strand, within ABIE40_RS19660at 27.659 kb on + strand, within ABIE40_RS19660at 27.659 kb on + strand, within ABIE40_RS19660at 27.659 kb on + strand, within ABIE40_RS19660at 27.660 kb on - strand, within ABIE40_RS19660at 27.660 kb on - strand, within ABIE40_RS19660at 27.660 kb on - strand, within ABIE40_RS19660at 27.660 kb on - strand, within ABIE40_RS19660at 27.740 kb on + strand, within ABIE40_RS19660at 27.741 kb on - strand, within ABIE40_RS19660at 27.743 kb on + strand, within ABIE40_RS19660at 27.743 kb on + strand, within ABIE40_RS19660at 27.744 kb on - strand, within ABIE40_RS19660at 27.744 kb on - strand, within ABIE40_RS19660at 27.756 kb on - strand, within ABIE40_RS19660at 27.756 kb on - strand, within ABIE40_RS19660at 27.847 kb on + strand, within ABIE40_RS19660at 27.848 kb on - strand, within ABIE40_RS19660at 27.893 kb on + strandat 27.893 kb on + strandat 27.893 kb on + strandat 27.893 kb on + strandat 27.894 kb on - strandat 27.894 kb on - strandat 27.894 kb on - strandat 27.894 kb on - strandat 27.953 kb on + strandat 27.953 kb on + strandat 27.953 kb on + strandat 27.953 kb on + strandat 27.954 kb on - strandat 28.077 kb on + strand, within ABIE40_RS19665at 28.078 kb on - strand, within ABIE40_RS19665at 28.078 kb on - strand, within ABIE40_RS19665at 28.243 kb on - strand, within ABIE40_RS19665at 28.480 kb on + strand, within ABIE40_RS19665at 28.480 kb on + strand, within ABIE40_RS19665at 28.481 kb on - strand, within ABIE40_RS19665at 28.481 kb on - strand, within ABIE40_RS19665at 28.497 kb on + strand, within ABIE40_RS19665at 28.497 kb on + strand, within ABIE40_RS19665at 28.498 kb on - strand, within ABIE40_RS19665at 28.498 kb on - strand, within ABIE40_RS19665at 28.650 kb on + strand, within ABIE40_RS19665at 28.650 kb on + strand, within ABIE40_RS19665at 28.650 kb on + strand, within ABIE40_RS19665at 28.650 kb on + strand, within ABIE40_RS19665at 28.651 kb on - strand, within ABIE40_RS19665at 28.651 kb on - strand, within ABIE40_RS19665at 28.820 kb on + strand, within ABIE40_RS19665at 28.820 kb on + strand, within ABIE40_RS19665at 28.821 kb on - strand, within ABIE40_RS19665at 28.821 kb on - strand, within ABIE40_RS19665at 28.821 kb on - strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.836 kb on + strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.837 kb on - strand, within ABIE40_RS19665at 28.923 kb on + strandat 28.923 kb on + strandat 28.924 kb on - strandat 28.924 kb on - strandat 28.924 kb on - strandat 28.981 kb on - strandat 29.107 kb on - strand, within ABIE40_RS19670at 29.173 kb on - strand, within ABIE40_RS19670at 29.369 kb on - strand, within ABIE40_RS19670at 29.696 kb on + strandat 29.708 kb on + strandat 29.708 kb on + strandat 29.708 kb on + strandat 29.708 kb on + strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.709 kb on - strandat 29.887 kb on - strand, within ABIE40_RS19675at 29.887 kb on - strand, within ABIE40_RS19675at 29.964 kb on + strand, within ABIE40_RS19675at 29.964 kb on + strand, within ABIE40_RS19675at 29.968 kb on + strand, within ABIE40_RS19675at 29.969 kb on - strand, within ABIE40_RS19675at 29.969 kb on - strand, within ABIE40_RS19675

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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27,131 + +0.2
27,132 - -0.4
27,233 + ABIE40_RS19660 0.16 -0.6
27,234 - ABIE40_RS19660 0.16 -0.2
27,234 - ABIE40_RS19660 0.16 -0.1
27,234 - ABIE40_RS19660 0.16 -0.9
27,234 - ABIE40_RS19660 0.16 -0.5
27,236 - ABIE40_RS19660 0.17 -0.1
27,246 - ABIE40_RS19660 0.18 -0.8
27,246 - ABIE40_RS19660 0.18 +1.3
27,353 + ABIE40_RS19660 0.30 +0.1
27,353 + ABIE40_RS19660 0.30 -1.8
27,353 + ABIE40_RS19660 0.30 -0.5
27,353 + ABIE40_RS19660 0.30 +0.5
27,354 - ABIE40_RS19660 0.30 +0.9
27,354 - ABIE40_RS19660 0.30 -1.3
27,354 - ABIE40_RS19660 0.30 +0.1
27,354 - ABIE40_RS19660 0.30 -1.1
27,354 - ABIE40_RS19660 0.30 +0.1
27,354 - ABIE40_RS19660 0.30 +1.6
27,425 + ABIE40_RS19660 0.39 -1.7
27,426 - ABIE40_RS19660 0.39 -0.3
27,426 - ABIE40_RS19660 0.39 +1.4
27,426 - ABIE40_RS19660 0.39 -0.6
27,659 + ABIE40_RS19660 0.66 +0.1
27,659 + ABIE40_RS19660 0.66 +0.1
27,659 + ABIE40_RS19660 0.66 +0.1
27,659 + ABIE40_RS19660 0.66 +0.0
27,659 + ABIE40_RS19660 0.66 -0.5
27,659 + ABIE40_RS19660 0.66 +0.5
27,660 - ABIE40_RS19660 0.66 -0.9
27,660 - ABIE40_RS19660 0.66 +0.4
27,660 - ABIE40_RS19660 0.66 -0.3
27,660 - ABIE40_RS19660 0.66 +0.7
27,740 + ABIE40_RS19660 0.75 -0.5
27,741 - ABIE40_RS19660 0.75 -0.2
27,743 + ABIE40_RS19660 0.75 -0.0
27,743 + ABIE40_RS19660 0.75 -0.0
27,744 - ABIE40_RS19660 0.75 -0.7
27,744 - ABIE40_RS19660 0.75 +0.6
27,756 - ABIE40_RS19660 0.77 -0.4
27,756 - ABIE40_RS19660 0.77 -0.7
27,847 + ABIE40_RS19660 0.87 +0.7
27,848 - ABIE40_RS19660 0.88 +0.1
27,893 + +1.1
27,893 + -1.6
27,893 + -0.9
27,893 + -1.1
27,894 - -0.6
27,894 - -0.9
27,894 - -0.1
27,894 - -1.6
27,953 + +1.6
27,953 + -1.5
27,953 + +1.1
27,953 + -1.1
27,954 - +0.3
28,077 + ABIE40_RS19665 0.11 -1.3
28,078 - ABIE40_RS19665 0.11 -0.5
28,078 - ABIE40_RS19665 0.11 -0.4
28,243 - ABIE40_RS19665 0.27 -1.0
28,480 + ABIE40_RS19665 0.51 -0.1
28,480 + ABIE40_RS19665 0.51 -1.0
28,481 - ABIE40_RS19665 0.51 +0.3
28,481 - ABIE40_RS19665 0.51 -0.5
28,497 + ABIE40_RS19665 0.53 +2.3
28,497 + ABIE40_RS19665 0.53 -1.8
28,498 - ABIE40_RS19665 0.53 -0.8
28,498 - ABIE40_RS19665 0.53 -1.6
28,650 + ABIE40_RS19665 0.68 -2.0
28,650 + ABIE40_RS19665 0.68 +0.1
28,650 + ABIE40_RS19665 0.68 -0.4
28,650 + ABIE40_RS19665 0.68 -0.6
28,651 - ABIE40_RS19665 0.68 -1.4
28,651 - ABIE40_RS19665 0.68 -0.9
28,820 + ABIE40_RS19665 0.85 +1.7
28,820 + ABIE40_RS19665 0.85 +1.0
28,821 - ABIE40_RS19665 0.85 -0.9
28,821 - ABIE40_RS19665 0.85 +0.7
28,821 - ABIE40_RS19665 0.85 +1.7
28,836 + ABIE40_RS19665 0.86 +0.6
28,836 + ABIE40_RS19665 0.86 +1.0
28,836 + ABIE40_RS19665 0.86 -1.1
28,836 + ABIE40_RS19665 0.86 +0.7
28,836 + ABIE40_RS19665 0.86 +0.1
28,836 + ABIE40_RS19665 0.86 +0.7
28,836 + ABIE40_RS19665 0.86 -0.5
28,836 + ABIE40_RS19665 0.86 +0.1
28,836 + ABIE40_RS19665 0.86 +0.4
28,837 - ABIE40_RS19665 0.86 -1.1
28,837 - ABIE40_RS19665 0.86 -1.4
28,837 - ABIE40_RS19665 0.86 +0.3
28,837 - ABIE40_RS19665 0.86 +0.3
28,837 - ABIE40_RS19665 0.86 -2.0
28,837 - ABIE40_RS19665 0.86 +0.3
28,837 - ABIE40_RS19665 0.86 -0.3
28,923 + -1.3
28,923 + -0.4
28,924 - -0.4
28,924 - +0.6
28,924 - +0.7
28,981 - -0.3
29,107 - ABIE40_RS19670 0.18 +0.0
29,173 - ABIE40_RS19670 0.27 -1.4
29,369 - ABIE40_RS19670 0.52 +0.7
29,696 + -0.5
29,708 + -0.8
29,708 + -0.2
29,708 + +1.3
29,708 + -0.4
29,709 - +0.1
29,709 - -0.2
29,709 - +1.7
29,709 - -2.1
29,709 - -0.6
29,709 - +0.7
29,709 - -0.1
29,887 - ABIE40_RS19675 0.24 +2.5
29,887 - ABIE40_RS19675 0.24 +0.0
29,964 + ABIE40_RS19675 0.35 -0.4
29,964 + ABIE40_RS19675 0.35 +1.6
29,968 + ABIE40_RS19675 0.35 +0.3
29,969 - ABIE40_RS19675 0.35 +0.8
29,969 - ABIE40_RS19675 0.35 -0.4

Or see this region's nucleotide sequence