Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_26370 and yebE are separated by 59 nucleotides yebE and ptrB are separated by 208 nucleotides ptrB and exoX overlap by 4 nucleotides exoX and yobB are separated by 23 nucleotides
OKFHMN_26370: OKFHMN_26370 - hypothetical protein, at 5,078,711 to 5,078,821
_26370
OKFHMN_26375: yebE - Inner membrane protein YebE, at 5,078,881 to 5,079,540
yebE
OKFHMN_26380: ptrB - oligopeptidase B, at 5,079,749 to 5,081,809
ptrB
OKFHMN_26385: exoX - exodeoxyribonuclease X, at 5,081,806 to 5,082,468
exoX
OKFHMN_26390: yobB - Uncharacterized protein YobB, at 5,082,492 to 5,083,148
yobB
Position (kb) 5079
5080
5081
5082 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5078.817 kb on + strand at 5078.817 kb on + strand at 5078.818 kb on - strand at 5078.934 kb on + strand at 5079.046 kb on + strand, within yebE at 5079.429 kb on + strand, within yebE at 5079.720 kb on - strand at 5079.746 kb on - strand at 5079.811 kb on + strand at 5079.881 kb on - strand at 5080.037 kb on - strand, within ptrB at 5080.037 kb on - strand, within ptrB at 5080.040 kb on + strand, within ptrB at 5080.040 kb on + strand, within ptrB at 5080.041 kb on - strand, within ptrB at 5080.086 kb on + strand, within ptrB at 5080.237 kb on + strand, within ptrB at 5080.632 kb on + strand, within ptrB at 5080.634 kb on + strand, within ptrB at 5080.645 kb on + strand, within ptrB at 5080.646 kb on - strand, within ptrB at 5080.646 kb on - strand, within ptrB at 5080.712 kb on - strand, within ptrB at 5080.777 kb on + strand, within ptrB at 5080.804 kb on + strand, within ptrB at 5081.096 kb on + strand, within ptrB at 5081.306 kb on + strand, within ptrB at 5081.434 kb on - strand, within ptrB at 5081.795 kb on - strand at 5081.980 kb on - strand, within exoX at 5082.048 kb on - strand, within exoX at 5082.056 kb on + strand, within exoX at 5082.057 kb on - strand, within exoX at 5082.240 kb on - strand, within exoX at 5082.457 kb on - strand at 5082.600 kb on + strand, within yobB
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 5,078,817 + -0.5 5,078,817 + -0.9 5,078,818 - +1.9 5,078,934 + -2.7 5,079,046 + yebE OKFHMN_26375 0.25 +1.0 5,079,429 + yebE OKFHMN_26375 0.83 -1.0 5,079,720 - +1.2 5,079,746 - +1.2 5,079,811 + +0.3 5,079,881 - -3.0 5,080,037 - ptrB OKFHMN_26380 0.14 -0.1 5,080,037 - ptrB OKFHMN_26380 0.14 -0.5 5,080,040 + ptrB OKFHMN_26380 0.14 -0.3 5,080,040 + ptrB OKFHMN_26380 0.14 +0.0 5,080,041 - ptrB OKFHMN_26380 0.14 +0.0 5,080,086 + ptrB OKFHMN_26380 0.16 -0.5 5,080,237 + ptrB OKFHMN_26380 0.24 -0.8 5,080,632 + ptrB OKFHMN_26380 0.43 -0.3 5,080,634 + ptrB OKFHMN_26380 0.43 +0.8 5,080,645 + ptrB OKFHMN_26380 0.43 -0.2 5,080,646 - ptrB OKFHMN_26380 0.44 -0.7 5,080,646 - ptrB OKFHMN_26380 0.44 +3.3 5,080,712 - ptrB OKFHMN_26380 0.47 +0.9 5,080,777 + ptrB OKFHMN_26380 0.50 -0.7 5,080,804 + ptrB OKFHMN_26380 0.51 -0.5 5,081,096 + ptrB OKFHMN_26380 0.65 -0.5 5,081,306 + ptrB OKFHMN_26380 0.76 -0.4 5,081,434 - ptrB OKFHMN_26380 0.82 -0.3 5,081,795 - -0.0 5,081,980 - exoX OKFHMN_26385 0.26 +1.1 5,082,048 - exoX OKFHMN_26385 0.37 +1.2 5,082,056 + exoX OKFHMN_26385 0.38 -0.7 5,082,057 - exoX OKFHMN_26385 0.38 +1.1 5,082,240 - exoX OKFHMN_26385 0.65 -0.6 5,082,457 - -1.3 5,082,600 + yobB OKFHMN_26390 0.16 +0.6
Or see this region's nucleotide sequence