Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliP and fliO overlap by 1 nucleotides fliO and fliN are separated by 2 nucleotides fliN and fliM overlap by 4 nucleotides fliM and fliL are separated by 4 nucleotides fliL and fliK are separated by 104 nucleotides
OKFHMN_25665: fliP - flagellar type III secretion system pore protein FliP, at 4,963,972 to 4,964,709
fliP
OKFHMN_25670: fliO - flagellar type III secretion system protein FliO, at 4,964,709 to 4,965,074
fliO
OKFHMN_25675: fliN - flagellar motor switch protein FliN, at 4,965,077 to 4,965,490
fliN
OKFHMN_25680: fliM - flagellar motor switch protein FliM, at 4,965,487 to 4,966,491
fliM
OKFHMN_25685: fliL - flagellar basal body-associated protein FliL, at 4,966,496 to 4,966,960
fliL
OKFHMN_25690: fliK - flagellar hook length control protein FliK, at 4,967,065 to 4,968,192
fliK
Position (kb)
4965
4966
4967 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4965.068 kb on + strand at 4965.139 kb on - strand, within fliN at 4965.665 kb on - strand, within fliM at 4965.683 kb on - strand, within fliM at 4965.922 kb on - strand, within fliM at 4965.997 kb on - strand, within fliM at 4966.518 kb on + strand at 4966.684 kb on - strand, within fliL at 4966.741 kb on - strand, within fliL at 4966.775 kb on - strand, within fliL at 4966.861 kb on - strand, within fliL at 4967.002 kb on + strand at 4967.054 kb on + strand at 4967.054 kb on + strand at 4967.054 kb on + strand at 4967.055 kb on - strand at 4967.110 kb on + strand at 4967.110 kb on + strand at 4967.111 kb on - strand at 4967.111 kb on - strand at 4967.168 kb on - strand at 4967.277 kb on + strand, within fliK at 4967.315 kb on - strand, within fliK at 4967.315 kb on - strand, within fliK at 4967.356 kb on - strand, within fliK at 4967.452 kb on - strand, within fliK
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 4,965,068 + -1.0 4,965,139 - fliN OKFHMN_25675 0.15 +0.8 4,965,665 - fliM OKFHMN_25680 0.18 -0.3 4,965,683 - fliM OKFHMN_25680 0.20 +1.1 4,965,922 - fliM OKFHMN_25680 0.43 -1.5 4,965,997 - fliM OKFHMN_25680 0.51 -0.1 4,966,518 + +0.3 4,966,684 - fliL OKFHMN_25685 0.40 -0.2 4,966,741 - fliL OKFHMN_25685 0.53 -0.1 4,966,775 - fliL OKFHMN_25685 0.60 -0.5 4,966,861 - fliL OKFHMN_25685 0.78 +0.8 4,967,002 + +3.9 4,967,054 + +0.1 4,967,054 + +0.5 4,967,054 + -0.1 4,967,055 - -0.3 4,967,110 + -0.1 4,967,110 + -1.7 4,967,111 - +0.7 4,967,111 - -1.2 4,967,168 - -1.8 4,967,277 + fliK OKFHMN_25690 0.19 +0.2 4,967,315 - fliK OKFHMN_25690 0.22 -0.9 4,967,315 - fliK OKFHMN_25690 0.22 +1.7 4,967,356 - fliK OKFHMN_25690 0.26 +1.8 4,967,452 - fliK OKFHMN_25690 0.34 +0.5
Or see this region's nucleotide sequence